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Shigella flexneri 5 str. 8401, complete genome - 1..4574284 4115 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 53.31 0 336..2798 + 820 110804075 thrA SFV_0001 - bifunctional aspartokinase I/homeserine dehydrogenase I 2 56.27 +1 2800..3732 + 310 110804076 thrB SFV_0002 - homoserine kinase 3 52.99 0 3733..5019 + 428 110804077 thrC SFV_0003 - threonine synthase 4 54.86 0 5242..5529 + 95 110804078 - SFV_0004 - hypothetical protein 5 49.68 0 5682..6458 - 258 110804079 yaaA SFV_0005 - hypothetical protein 6 51.89 0 8303..9256 + 317 162139365 talB SFV_0007 - transaldolase B 7 53.98 0 9368..9958 + 196 110804081 mogA SFV_0008 - molybdenum cofactor biosynthesis protein 8 53.26 0 9993..10559 - 188 110804082 yaaH SFV_0009 - hypothetical protein 9 50.42 0 10708..11421 - 237 110804083 - SFV_0010 - hypothetical protein 10 48.64 0 11447..11851 - 134 110804084 yaaI SFV_0011 - hypothetical protein 11 51.17 0 12228..14144 + 638 110804085 dnaK SFV_0012 - molecular chaperone DnaK 12 55.17 0 14233..15363 + 376 110804086 dnaJ SFV_0013 - chaperone protein DnaJ 13 51.16 0 16206..17372 + 388 110804087 nhaA SFV_0014 - pH-dependent sodium/proton antiporter 14 47.44 0 17438..18337 + 299 110804088 nhaR SFV_0015 - transcriptional activator NhaR 15 52.98 0 18750..19253 - 167 110804089 insB SFV_0016 - IS1 ORF2 16 46.57 -1 19328..19531 + 67 110804090 - SFV_0017 - putative IS1 encoded protein 17 45.83 -1 19836..20099 - 87 110804091 rpsT SFV_0018 - 30S ribosomal protein S20 18 52.97 0 20428..21369 + 313 110804092 ribF SFV_0019 - bifunctional riboflavin kinase/FMN adenylyltransferase 19 55.62 +1 21460..24228 + 922 110804093 ileS SFV_0020 - isoleucyl-tRNA synthetase 20 53.94 0 24228..24722 + 164 110804094 lspA SFV_0021 - lipoprotein signal peptidase 21 54.89 0 24809..25258 + 149 110804095 slpA SFV_0022 - FKBX-type 16KD peptidyl-prolyl cis-trans isomerase 22 55.21 0 25260..26210 + 316 110804096 ispH SFV_0023 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 23 55.74 +1 26276..27190 + 304 110804097 yaaF SFV_0024 - ribonucleoside hydrolase RihC 24 52.20 0 27405..28178 + 257 110804098 dapB SFV_0025 - dihydrodipicolinate reductase 25 53.35 0 28634..29782 + 382 110804099 carA SFV_0026 - carbamoyl phosphate synthase small subunit 26 55.68 +1 29800..33021 + 1073 110804100 carB SFV_0027 - carbamoyl phosphate synthase large subunit 27 43.31 -1 33178..33678 + 166 110804101 caiF SFV_0028 - DNA-binding transcriptional activator CaiF 28 54.41 0 33764..34375 - 203 110804102 caiE SFV_0029 - carnitine operon protein CaiE 29 52.46 0 34360..35253 - 297 110804103 caiD SFV_0030 - carnitinyl-CoA dehydratase 30 51.21 0 35274..36806 - 510 110804104 caiC SFV_0031 - putative crotonobetaine/carnitine-CoA ligase 31 52.38 0 36880..38097 - 405 110804105 caiB SFV_0032 - crotonobetainyl-CoA:carnitine CoA-transferase 32 53.81 0 38226..39368 - 380 110804106 caiA SFV_0033 - crotonobetainyl-CoA dehydrogenase 33 52.28 0 39399..40913 - 504 110804107 caiT SFV_0034 - L-carnitine/gamma-butyrobetaine antiporter 34 52.66 0 41385..42155 + 256 110804108 fixA SFV_0035 - putative electron transfer flavoprotein FixA 35 55.17 0 43162..44448 + 428 110804109 fixC SFV_0037 - putative oxidoreductase FixC 36 56.60 +1 44445..44732 + 95 110804110 fixX SFV_0038 - putative ferredoxin 37 52.26 0 44791..46185 + 464 110804111 yaaU SFV_0039 - putative transport protein 38 55.37 0 46233..46763 + 176 110804112 yabF SFV_0040 - glutathione-regulated potassium-efflux system ancillary protein KefF 39 55.18 0 46756..48618 + 620 110804113 kefC SFV_0041 - glutathione-regulated potassium-efflux system protein KefC 40 52.92 0 48809..49288 + 159 110804114 folA SFV_0042 - dihydrofolate reductase 41 55.99 +1 49366..50208 - 280 110804115 apaH SFV_0043 - diadenosine tetraphosphatase 42 51.59 0 50215..50592 - 125 110804116 apaG SFV_0044 - ApaG 43 53.53 0 50595..51416 - 273 110804117 ksgA SFV_0045 - dimethyladenosine transferase 44 56.26 +1 51413..52402 - 329 110804118 pdxA SFV_0046 - 4-hydroxythreonine-4-phosphate dehydrogenase 45 53.92 0 52402..53688 - 428 110804119 surA SFV_0047 - peptidyl-prolyl cis-trans isomerase SurA 46 51.42 0 53741..56095 - 784 110804120 imp SFV_0048 - organic solvent tolerance protein 47 52.94 0 56350..57165 + 271 110804121 djlA SFV_0049 - DNA-J like membrane chaperone protein 48 54.24 0 57282..57941 - 219 110804122 yabO SFV_0050 - 23S rRNA/tRNA pseudouridine synthase A 49 54.90 0 57953..60859 - 968 110804123 hepA SFV_0051 - ATP-dependent helicase HepA 50 55.27 0 61024..63375 - 783 110804124 polB SFV_0052 - DNA polymerase II 51 55.03 0 63450..64145 - 231 110804125 araD SFV_0053 - L-ribulose-5-phosphate 4-epimerase 52 55.42 0 64345..65847 - 500 110804126 araA SFV_0054 - L-arabinose isomerase 53 57.91 +1 65858..67558 - 566 110804127 araB SFV_0055 - ribulokinase 54 52.45 0 67897..68775 + 292 110804128 araC SFV_0056 - DNA-binding transcriptional regulator AraC 55 54.51 0 68861..69625 + 254 110804129 yabI SFV_0057 - hypothetical protein 56 56.80 +1 69739..70437 - 232 110804130 thiQ SFV_0058 - thiamine transporter ATP-binding subunit 57 58.41 +1 70421..72031 - 536 110804131 thiP SFV_0059 - thiamine transporter membrane protein 58 52.95 0 72007..72990 - 327 110804132 tbpA SFV_0060 - thiamine transporter substrate binding subunit 59 55.19 0 73154..74809 - 551 110804133 yabN SFV_0061 - transcriptional regulator SgrR 60 52.15 0 76358..76963 - 201 110804134 leuD SFV_0063 - isopropylmalate isomerase small subunit 61 55.32 0 76974..78374 - 466 110804135 leuC SFV_0064 - isopropylmalate isomerase large subunit 62 55.56 +1 78377..79411 - 344 110804136 leuB SFV_0065 - 3-isopropylmalate dehydrogenase 63 52.93 0 79468..81039 - 523 110804137 leuA SFV_0066 - 2-isopropylmalate synthase 64 43.67 -1 81702..82823 + 373 110804138 leuO SFV_0067 - leucine transcriptional activator 65 52.81 0 83141..84865 + 574 162139364 ilvI SFV_0068 - acetolactate synthase 3 catalytic subunit 66 50.20 0 84868..85359 + 163 110804140 ilvH SFV_0069 - acetolactate synthase 3 regulatory subunit 67 47.13 -1 85371..85457 + 28 110804141 fruL SFV_0070 - fruR leader peptide 68 54.93 0 85539..86543 + 334 110804142 fruR SFV_0071 - DNA-binding transcriptional regulator FruR 69 50.00 0 86540..86785 - 81 110804143 - SFV_0072 - putative IS1 encoded protein 70 52.38 0 86860..87363 + 167 110804144 insB SFV_0073 - IS1 ORF2 71 52.07 0 87922..88380 + 152 110804145 yabB SFV_0074 - cell division protein MraZ 72 55.20 0 88382..89323 + 313 110804146 mraW SFV_0075 - S-adenosyl-methyltransferase MraW 73 50.55 0 89320..89685 + 121 110804147 ftsL SFV_0076 - cell division protein FtsL 74 53.99 0 89701..91467 + 588 110804148 ftsI SFV_0077 - penicillin-binding protein 3; peptidoglycan synthetase 75 56.85 +1 91454..92941 + 495 110804149 murE SFV_0078 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 76 54.89 0 92938..94296 + 452 110804150 murF SFV_0079 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 77 52.82 0 94290..95372 + 360 110804151 mraY SFV_0080 - phospho-N-acetylmuramoyl-pentapeptide-transferase 78 55.28 0 95375..96691 + 438 110804152 murD SFV_0081 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 79 52.61 0 96691..97935 + 414 110804153 ftsW SFV_0082 - cell division protein FtsW 80 55.71 +1 97932..98999 + 355 110804154 murG SFV_0083 - N-acetylglucosaminyl transferase 81 54.47 0 99053..100528 + 491 110804155 murC SFV_0084 - UDP-N-acetylmuramate--L-alanine ligase 82 51.47 0 100521..101441 + 306 110804156 ddl SFV_0085 - D-alanine--D-alanine ligase 83 53.19 0 101443..102273 + 276 110804157 ftsQ SFV_0086 - cell division protein FtsQ 84 51.88 0 102363..103532 + 389 110804158 ftsA SFV_0087 - cell division protein FtsA 85 54.08 0 103593..104744 + 383 110804159 ftsZ SFV_0088 - cell division protein FtsZ 86 51.20 0 104845..105762 + 305 110804160 lpxC SFV_0089 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 87 50.30 0 105840..106505 + 221 110804161 yacA SFV_0090 - SecA regulator SecM 88 52.29 0 106567..109272 + 901 110804162 secA SFV_0091 - preprotein translocase subunit SecA 89 49.23 0 109332..109721 + 129 110804163 mutT SFV_0092 - nucleoside triphosphate pyrophosphohydrolase 90 52.02 0 109821..110018 - 65 110804164 yacG SFV_0093 - zinc-binding protein 91 51.21 0 110028..110771 - 247 110804165 yacF SFV_0094 - hypothetical protein 92 52.33 0 110771..111391 - 206 110804166 coaE SFV_0095 - dephospho-CoA kinase 93 51.82 0 111616..112659 + 347 110804167 guaC SFV_0096 - guanosine 5'-monophosphate oxidoreductase 94 52.37 0 112694..113896 - 400 110804168 hofC SFV_0097 - type IV pilin biogenesis protein 95 53.06 0 115043..115483 - 146 110804169 ppdD SFV_0099 - putative major pilin subunit 96 53.36 0 115686..116579 - 297 110804170 nadC SFV_0100 - quinolinate phosphoribosyltransferase 97 53.80 0 116667..117218 + 183 110804171 ampD SFV_0101 - N-acetyl-anhydromuranmyl-L-alanine amidase 98 52.16 0 117215..118069 + 284 110804172 ampE SFV_0102 - regulatory protein AmpE 99 52.69 0 118112..119485 - 457 110804173 aroP SFV_0103 - aromatic amino acid transporter 100 55.64 +1 119993..120790 + 265 110804174 pdhR SFV_0104 - transcriptional regulator PdhR 51.34 MEAN 4.18 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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