IslandPath Analysis: Caldivirga maquilingensis IC-167



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.56   STD DEV: 3.33
Caldivirga maquilingensis IC-167, complete genome - 1..2077567
1963 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 46.76	0	3..8819	-	2938	159040593	-	Cmaq_0001	-	hypothetical protein
2	 46.50	0	9055..11400	-	781	159040594	-	Cmaq_0002	-	protease-like protein
3	 40.81	0	11454..14903	-	1149	159040595	-	Cmaq_0003	-	hypothetical protein
4	 47.86	+1	14977..15444	-	155	159040596	-	Cmaq_0004	-	ribosomal protein S24E-like protein
5	 50.27	+2	15986..17809	-	607	159040597	-	Cmaq_0005	-	aldehyde ferredoxin oxidoreductase
6	 41.19	0	17899..19425	+	508	159040598	-	Cmaq_0006	-	sodium/hydrogen exchanger
7	 49.14	+1	19499..21175	-	558	159040599	-	Cmaq_0007	-	thermosome
8	 47.58	+1	21262..22293	-	343	159040600	-	Cmaq_0008	-	aspartate-semialdehyde dehydrogenase
9	 44.18	0	22269..23402	-	377	159040601	-	Cmaq_0009	-	aspartate kinase
10	 47.76	+1	23708..24331	-	207	159040602	-	Cmaq_0010	-	50S ribosomal protein L18P
11	 46.96	+1	24331..24807	-	158	159040603	-	Cmaq_0011	-	50S ribosomal protein L19e
12	 48.48	+1	24809..25402	-	197	159040604	-	Cmaq_0012	-	ribosomal protein L32e
13	 44.95	0	25529..26380	+	283	159040605	-	Cmaq_0013	-	hypothetical protein
14	 42.85	0	26412..27662	-	416	159040606	-	Cmaq_0014	-	thiamine biosynthesis/tRNA modification protein ThiI
15	 43.19	0	27695..28252	-	185	159040607	-	Cmaq_0015	-	inorganic diphosphatase
16	 37.28	-1	28446..28673	-	75	159040608	-	Cmaq_0016	-	hypothetical protein
17	 44.14	0	28869..30395	-	508	159040609	-	Cmaq_0017	-	hypothetical protein
18	 45.31	0	30562..31980	-	472	159040610	-	Cmaq_0018	-	FAD dependent oxidoreductase
19	 47.58	+1	31977..32987	-	336	159040611	-	Cmaq_0019	-	adenylosuccinate synthetase
20	 42.60	0	33104..34516	+	470	159040612	-	Cmaq_0020	-	adenylosuccinate lyase
21	 44.57	0	34596..35645	+	349	159040613	-	Cmaq_0021	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
22	 42.60	0	35642..36655	+	337	159040614	-	Cmaq_0022	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
23	 46.32	0	36930..37445	+	171	159040615	-	Cmaq_0023	-	hypothetical protein
24	 42.45	0	37468..39036	-	522	159040616	-	Cmaq_0024	-	tRNA-guanine transglycosylase, various specificities
25	 43.03	0	39036..39458	-	140	159040617	-	Cmaq_0025	-	like-Sm ribonucleoprotein core
26	 38.79	-1	39512..39859	+	115	159040618	-	Cmaq_0026	-	hypothetical protein
27	 47.25	+1	39876..41549	-	557	159040619	-	Cmaq_0027	-	thermosome
28	 40.81	0	41674..42141	+	155	159040620	-	Cmaq_0028	-	NUDIX hydrolase
29	 45.60	0	42314..44539	+	741	159040621	-	Cmaq_0029	-	glutamate synthase (NADPH)
30	 44.61	0	44533..46545	+	670	159040622	-	Cmaq_0030	-	glutamate synthase alpha subunit
31	 41.18	0	46552..46959	-	135	159040623	-	Cmaq_0031	-	endoribonuclease L-PSP
32	 35.01	-2	47056..47772	+	238	159040624	-	Cmaq_0032	-	bacterio-opsin activator
33	 43.90	0	47839..50184	+	781	159040625	-	Cmaq_0033	-	extracellular solute-binding protein
34	 35.93	-2	50257..51102	-	281	159040626	-	Cmaq_0034	-	hypothetical protein
35	 44.36	0	51205..51585	+	126	159040627	-	Cmaq_0035	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
36	 44.86	0	51615..52100	-	161	159040628	-	Cmaq_0036	-	hypothetical protein
37	 41.13	0	52162..53085	-	307	159040629	-	Cmaq_0037	-	peptidase S1 and S6 chymotrypsin/Hap
38	 39.27	-1	53135..54499	-	454	159040630	-	Cmaq_0038	-	hypothetical protein
39	 42.91	0	54649..54909	-	86	159040631	-	Cmaq_0039	-	hypothetical protein
40	 45.68	0	54915..55967	-	350	159040632	-	Cmaq_0040	-	flap endonuclease-1
41	 41.14	0	56167..57486	-	439	159040633	-	Cmaq_0041	-	hypothetical protein
42	 44.33	0	57724..58605	+	293	159040634	-	Cmaq_0042	-	proliferating cell nuclear antigen
43	 41.20	0	58722..59369	-	215	159040635	-	Cmaq_0043	-	hypothetical protein
44	 42.14	0	59379..59798	-	139	159040636	-	Cmaq_0044	-	thioredoxin
45	 37.50	-1	59826..60257	-	143	159040637	-	Cmaq_0045	-	hypothetical protein
46	 41.25	0	60352..61539	-	395	159040638	-	Cmaq_0046	-	hypothetical protein
47	 41.96	0	61541..63001	-	486	159040639	-	Cmaq_0047	-	hypothetical protein
48	 40.14	-1	63085..64509	-	474	159040640	-	Cmaq_0048	-	von Willebrand factor type A
49	 43.61	0	64773..66455	+	560	159040641	-	Cmaq_0049	-	major facilitator transporter
50	 39.95	-1	66481..67356	-	291	159040642	-	Cmaq_0050	-	hypothetical protein
51	 41.47	0	67502..68533	-	343	159040643	-	Cmaq_0051	-	hypothetical protein
52	 31.87	-2	68820..69092	+	90	159040644	-	Cmaq_0052	-	hypothetical protein
53	 40.12	-1	69097..70113	-	338	159040645	-	Cmaq_0053	-	hypothetical protein
54	 44.95	0	70381..71232	+	283	159040646	-	Cmaq_0054	-	short-chain dehydrogenase/reductase SDR
55	 38.75	-1	71442..71681	+	79	159040647	-	Cmaq_0055	-	hypothetical protein
56	 43.43	0	71857..72648	+	263	159040648	-	Cmaq_0056	-	nucleotidyl transferase
57	 43.64	0	72641..73630	-	329	159040649	-	Cmaq_0057	-	hypothetical protein
58	 40.49	0	73772..74176	+	134	159040650	-	Cmaq_0058	-	ferric uptake regulator family protein
59	 45.22	0	74232..74702	+	156	159040651	-	Cmaq_0059	-	rubrerythrin
60	 37.98	-1	74719..75321	+	200	159040652	-	Cmaq_0060	-	hypothetical protein
61	 47.25	+1	75444..76061	-	205	159040653	-	Cmaq_0061	-	thiamine-phosphate pyrophosphorylase
62	 44.57	0	76058..76858	-	266	159040654	-	Cmaq_0062	-	hydroxyethylthiazole kinase
63	 46.12	0	76938..78329	-	463	159040655	-	Cmaq_0063	-	ferredoxin-dependent glutamate synthase
64	 45.65	0	78338..79384	-	348	159040656	-	Cmaq_0064	-	asparagine synthetase A
65	 44.60	0	79548..80807	-	419	159040657	-	Cmaq_0065	-	translation-associated GTPase
66	 33.93	-2	80903..81235	-	110	159040658	-	Cmaq_0066	-	hypothetical protein
67	 45.14	0	81315..82127	+	270	159040659	-	Cmaq_0067	-	band 7 protein
68	 41.54	0	82152..83516	+	454	159040660	-	Cmaq_0068	-	hypothetical protein
69	 37.50	-1	83749..84060	+	103	159040661	-	Cmaq_0069	-	hypothetical protein
70	 39.53	-1	84060..85028	+	322	159040662	-	Cmaq_0070	-	hypothetical protein
71	 38.33	-1	85034..85513	-	159	159040663	-	Cmaq_0071	-	hypothetical protein
72	 40.23	0	85554..86162	-	202	159040664	-	Cmaq_0072	-	hypothetical protein
73	 43.35	0	86231..87637	-	468	159040665	-	Cmaq_0073	-	aldehyde dehydrogenase
74	 46.13	0	87718..88905	-	395	159040666	-	Cmaq_0074	-	mandelate racemase/muconate lactonizing protein
75	 39.43	-1	89365..90234	+	289	159040667	-	Cmaq_0075	-	SMP-30/gluconolaconase/LRE domain-containing protein
76	 45.05	0	90266..90931	-	221	159040668	-	Cmaq_0076	-	NADP oxidoreductase coenzyme F420-dependent
77	 37.29	-1	91223..91576	+	117	159040669	-	Cmaq_0077	-	hypothetical protein
78	 42.03	0	91627..92580	-	317	159040670	-	Cmaq_0078	-	ROK family protein
79	 44.07	0	92585..93376	-	263	159040671	-	Cmaq_0079	-	SIS (sugar isomerase) phosphosugar binding domain-containing protein
80	 42.64	0	93529..95676	+	715	159040672	-	Cmaq_0080	-	glycoside hydrolase family 42 protein
81	 43.38	0	96031..96657	-	208	159040673	-	Cmaq_0081	-	hypothetical protein
82	 36.93	-1	96791..97513	+	240	159040674	-	Cmaq_0082	-	hypothetical protein
83	 44.82	0	97792..99759	+	655	159040675	-	Cmaq_0083	-	molybdenum cofactor synthesis domain-containing protein
84	 44.07	0	99770..101539	-	589	159040676	-	Cmaq_0084	-	major facilitator transporter
85	 41.90	0	101562..102728	-	388	159040677	-	Cmaq_0085	-	GCN5-related N-acetyltransferase
86	 37.66	-1	102776..104464	-	562	159040678	-	Cmaq_0086	-	hypothetical protein
87	 39.95	-1	104497..105297	-	266	159040679	-	Cmaq_0087	-	hypothetical protein
88	 42.08	0	105294..105533	-	79	159040680	-	Cmaq_0088	-	hypothetical protein
89	 42.75	0	105597..107306	-	569	159040681	-	Cmaq_0089	-	radical SAM domain-containing protein
90	 43.25	0	107368..109182	-	604	159040682	-	Cmaq_0090	-	glycoside hydrolase 15-related
91	 36.13	-2	109421..109777	+	118	159040683	-	Cmaq_0091	-	hypothetical protein
92	 44.69	0	109829..110770	-	313	159040684	-	Cmaq_0092	-	ornithine carbamoyltransferase
93	 41.92	0	110816..111886	-	356	159040685	-	Cmaq_0093	-	radical SAM domain-containing protein
94	 42.30	0	111980..112336	-	118	159040686	-	Cmaq_0094	-	hypothetical protein
95	 44.12	0	112385..115165	+	926	159040687	-	Cmaq_0095	-	DEAD/DEAH box helicase domain-containing protein
96	 39.39	-1	115333..115629	+	98	159040688	-	Cmaq_0096	-	hypothetical protein
97	 43.44	0	115659..116024	-	121	159040689	-	Cmaq_0097	-	30S ribosomal protein S10P
98	 38.78	-1	116268..117056	+	262	159040690	-	Cmaq_0098	-	methyltransferase type 11
99	 43.25	0	117421..117894	-	157	159040691	-	Cmaq_0099	-	hypothetical protein
100	 42.65	0	117895..118173	-	92	159040692	-	Cmaq_0100	-	hypothetical protein
43.56	MEAN

3.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.