IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.65   STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 49.13	0	1..1905	+	634	56416371	-	AM1359	-	hypothetical protein
2	 55.69	+2	1862..2362	-	166	56416372	purE	AM001	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
3	 48.76	0	2355..2957	-	200	56416373	-	AM002	-	hypothetical protein
4	 50.89	0	3113..4183	+	356	56416374	rodA	AM005	-	rod shape determining protein
5	 48.82	0	4258..4554	+	98	56416375	-	AM006	-	hypothetical protein
6	 49.07	0	4551..4925	+	124	56416376	-	AM007	-	hypothetical protein
7	 49.09	0	5187..6119	-	310	56416377	-	AM008	-	hypothetical protein
8	 45.99	-1	6209..6619	-	136	56416378	-	AM009	-	hypothetical protein
9	 52.88	+1	6921..7544	+	207	56416379	murC	AM010	-	UDP-N-acetylmuramate-alanine ligase
10	 49.34	0	7532..8368	+	278	56416380	murC	AM011	-	UDP-N-acetylmuramate-alanine ligase
11	 48.89	0	8395..9384	-	329	56416381	trpS	AM012	-	tryptophanyl-tRNA synthetase
12	 50.91	0	9381..9875	-	164	56416382	grpE	AM013	-	GRPE protein
13	 52.06	0	10097..11212	+	371	56416383	ribD	AM015	-	riboflavin biosynthesis protein
14	 50.21	0	11486..13168	-	560	56416384	pyrG	AM018	-	CTP synthetase
15	 50.91	0	13181..13510	-	109	56416385	secG	AM019	-	preprotein translocase subunit SecG
16	 49.43	0	13686..13946	+	86	56416386	-	AM020	-	hypothetical protein
17	 50.16	0	13939..14877	+	312	56416387	xerD	AM021	-	integrase/recombinase
18	 52.89	+1	15075..15749	-	224	56416388	phnL	AM023	-	ATP transporter ATP-binding protein
19	 51.18	0	16020..18272	+	750	56416389	maeB	AM024	-	malic enzyme
20	 52.55	+1	18446..21166	+	906	56416390	-	AM025	-	hypothetical protein
21	 50.89	0	21386..22900	+	504	56416391	-	AM026	-	putative monovalent cation/H+ antiporter subunit D
22	 51.94	0	22915..23301	-	128	56416392	-	AM027	-	hypothetical protein
23	 43.93	-2	23496..23882	-	128	56416393	orfX	AM030	-	ORF X
24	 47.86	0	23955..24188	-	77	56416394	orfY	AM032	-	ORF Y
25	 50.25	0	25004..27445	-	813	56416395	-	AM034	-	hypothetical protein
26	 42.86	-2	27643..27852	+	69	56416396	-	AM035	-	hypothetical protein
27	 51.57	0	27915..28709	+	264	56416397	thiG	AM037	-	thiazole synthase
28	 49.21	0	28807..29247	-	146	56416398	-	AM038	-	hypothetical protein
29	 48.72	0	29429..30754	+	441	56416399	gltX	AM039	-	glutamyl-tRNA synthetase
30	 51.00	0	31186..32391	+	401	56416400	-	AM041	-	hypothetical protein
31	 51.25	0	32410..32967	+	185	56416401	-	AM042	-	hypothetical protein
32	 45.11	-1	33143..33541	-	132	56416402	orfX	AM044	-	ORF X
33	 47.86	0	33614..33847	-	77	56416403	orfY	AM046	-	ORF Y
34	 46.74	-1	36761..38125	-	454	56416404	rho	AM051	-	transcription termination factor Rho
35	 51.94	0	38234..38851	-	205	56416405	-	AM052	-	hypothetical protein
36	 55.22	+1	39269..39469	+	66	56416406	rpmI	AM053	-	50S ribosomal protein L35
37	 53.23	+1	39496..39882	+	128	56416407	rplT	AM054	-	50S ribosomal protein L20
38	 51.99	0	39845..40900	+	351	56416408	pheS	AM055	-	phenylalanyl tRNA synthetase alpha subunit
39	 50.46	0	40991..41749	+	252	56416409	-	AM056	-	hypothetical protein
40	 51.13	0	41930..43216	+	428	56416410	glmU	AM058	-	UDP-N-acetylglucosamine pyrophosphorylase
41	 53.70	+1	43369..43638	-	89	56416411	rpsP	AM059	-	30S ribosomal protein S16
42	 51.20	0	43929..45215	+	428	56416412	proP1	AM060	-	proline/betaine transport protein
43	 47.01	0	47834..48067	+	77	56416413	orfY	AM063	-	ORF Y
44	 45.96	-1	48140..48535	+	131	56416414	orfX	AM065	-	ORF X
45	 55.24	+1	49429..50469	+	346	56416415	fpbA	AM069	-	iron binding protein FbpA precursor
46	 54.44	+1	50470..50649	+	59	56416416	-	AM070	-	hypothetical protein
47	 49.60	0	50899..54888	-	1329	56416417	-	AM071	-	hypothetical protein
48	 51.68	0	55153..61272	+	2039	56416418	-	AM072	-	hypothetical protein
49	 48.46	0	61443..61898	-	151	56416419	-	AM073	-	transcriptional regulator NrdR
50	 50.66	0	62431..62886	+	151	56416420	-	AM074	-	hypothetical protein
51	 52.59	+1	63055..64269	+	404	56416421	omp14	AM075	-	outer membrane protein 14
52	 44.78	-1	64841..65242	-	133	56416422	orfX	AM077	-	ORF X
53	 46.08	-1	67571..67978	+	135	56416423	orfX	AM082	-	ORF X
54	 51.11	0	68810..69889	+	359	56416424	recA	AM085	-	recombinase A
55	 49.75	0	69984..70586	+	200	56416425	pyrE	AM087	-	orotate phosphoribosyltransferase
56	 50.31	0	70620..71426	+	268	56416426	thiF	AM088	-	thiamine biosynthesis protein
57	 49.00	0	71782..72630	-	282	56416427	msp4	AM090	-	major surface protein 4
58	 46.43	-1	75388..76326	-	312	56416428	-	AM092	-	hypothetical protein
59	 46.11	-1	76411..76731	-	106	56416429	-	AM093	-	hypothetical protein
60	 45.59	-1	76781..76984	+	67	56416430	-	AM094	-	hypothetical protein
61	 51.72	0	77419..77766	-	115	56416431	trxA	AM096	-	thioredoxin
62	 50.31	0	77775..78587	-	270	56416432	trbG	AM097	-	conjugal transfer protein trbG precursor
63	 49.06	0	78838..79956	-	372	56416433	pdhA	AM101	-	pyruvate dehydrogenase E1 component, alpha subunit precursor
64	 49.68	0	79928..80869	-	313	56416434	rrf	AM102	-	hypothetical protein
65	 49.80	0	84517..85998	-	493	56416435	guaB	AM105	-	inosine monophosphate dehydrogenase
66	 52.42	0	86056..86820	-	254	56416436	ppnK	AM106	-	inorganic polyphosphate/ATP-NAD kinase
67	 48.20	0	86873..87094	-	73	161544994	rpmE	AM108	-	50S ribosomal protein L31
68	 51.47	0	87396..88415	+	339	56416438	fabD	AM110	-	malonyl CoA-acyl carrier protein transacylase
69	 49.53	0	88417..89052	+	211	56416439	tmk	AM111	-	thymidylate kinase
70	 49.41	0	89107..90375	+	422	56416440	-	AM112	-	hypothetical protein
71	 51.99	0	90533..91186	-	217	56416441	-	AM113	-	hypothetical protein
72	 49.43	0	91268..91795	+	175	56416442	secB	AM114	-	preprotein translocase subunit SecB
73	 47.86	0	91749..92567	+	272	56416443	-	AM116	-	hypothetical protein
74	 46.61	-1	92821..94131	-	436	56416444	mpp	AM117	-	mitochondrial processing protease
75	 51.02	0	94178..95500	+	440	56416445	-	AM118	-	hypothetical protein
76	 50.93	0	95806..97209	+	467	56416446	-	AM119	-	hypothetical protein
77	 52.43	0	97306..97923	-	205	56416447	ribA	AM120	-	riboflavin synthase subunit alpha
78	 55.74	+2	97418..98149	+	243	56416448	-	AM122	-	hypothetical protein
79	 50.29	0	98205..100475	-	756	56416449	msp1B-2	AM123	-	major surface protein 1B-2
80	 49.54	0	100706..101902	-	398	56416450	msp1bpg2	AM124	-	major surface protein 1B
81	 49.49	0	101880..105338	-	1152	56416451	mfd	AM125	-	transcription repair coupling factor
82	 49.81	0	105394..105909	+	171	56416452	rnhA	AM126	-	ribonuclease H
83	 48.50	0	105919..108918	+	999	56416453	-	AM127	-	hypothetical protein
84	 48.95	0	109082..109843	+	253	56416454	pyrH	AM128	-	uridylate kinase
85	 45.29	-1	109852..110403	+	183	56416455	frr	AM130	-	ribosome recycling factor
86	 48.50	0	110416..111114	+	232	56416456	uppS	AM131	-	putative undecaprenyl diphosphate synthase
87	 48.93	0	111068..111952	+	294	56416457	cdsA	AM132	-	phosphatidate cytidylyltransferase
88	 49.79	0	112247..114160	-	637	56416458	msp1Bpg3	AM133	-	major surface protein 1B
89	 51.40	0	114304..117225	-	973	56416459	-	AM136	-	hypothetical protein
90	 49.11	0	117369..118097	-	242	56416460	purC	AM137	-	phosphoribosoylaminoimidazole-succinocarboxamide synthase
91	 49.50	0	118215..119507	+	430	56416461	hisS	AM138	-	histidyl-tRNA synthetase
92	 47.88	0	119517..120272	-	251	56416462	-	AM139	-	hypothetical protein
93	 51.56	0	120631..121656	+	341	56416463	coxW	AM141	-	cytochrome C oxidase assembly protein
94	 52.28	0	121691..122524	+	277	56416464	panB	AM142	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
95	 48.80	0	122666..123292	-	208	56416465	ccmA	AM144	-	cytochrome c biogenesis protein CcmA
96	 53.77	+1	123325..124611	-	428	56416466	murA	AM145	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
97	 49.28	0	124613..125170	-	185	56416467	dcd	AM147	-	deoxycytidine triphosphate deaminase
98	 50.24	0	125269..126114	-	281	56416468	-	AM148	-	hypothetical protein
99	 50.90	0	126498..126776	+	92	56416469	cspA	AM149	-	cold shock protein
100	 51.05	0	126818..128905	+	695	56416470	ntrY	AM150	-	nitrogen regulation protein
49.65	MEAN

2.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.