IslandPath Analysis: Cupriavidus taiwanensis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.90   STD DEV: 4.11
Cupriavidus taiwanensis, complete genome - 1..2502411
2243 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.75	0	89..1183	+	364	188591848	repA2	RALTA_B0002	-	RepA replicase protein
2	 59.80	-1	1295..1498	-	67	188591849	-	RALTA_B0003	-	Cold shock-like protein
3	 63.64	-1	1874..2533	+	219	188591850	parA2	RALTA_B0004	-	plasmid partition ATPase
4	 64.11	0	2536..3552	+	338	188591851	parB2	RALTA_B0005	-	plasmid partition protein
5	 72.44	+1	3658..5250	-	530	188591852	-	RALTA_B0006	-	putative integrase/recombinase
6	 70.69	0	5780..6625	+	281	188591853	-	RALTA_B0007	-	Putative transcription regulator, LuxR family
7	 72.38	+1	6891..7433	+	180	188591854	-	RALTA_B0008	-	conserved hypothetical protein, CheY response regulator receiver domain
8	 70.16	0	7529..7843	+	104	188591855	-	RALTA_B0009	-	hypothetical protein
9	 70.98	0	7840..8094	+	84	188591856	-	RALTA_B0010	-	hypothetical protein
10	 72.37	+1	8327..8992	+	221	188591857	-	RALTA_B0011	-	Putative phosphatase
11	 68.02	0	9125..10528	+	467	188591858	-	RALTA_B0012	-	undecaprenyl-phosphate galactosephosphotransferase
12	 65.08	0	10641..10892	+	83	188591859	-	RALTA_B0013	-	Putative acyl carrier protein
13	 69.47	0	10968..11966	+	332	188591860	-	RALTA_B0014	-	conserved hypothetical protein; putative seryl-tRNA synthetase
14	 68.30	0	11967..12947	+	326	188591861	-	RALTA_B0015	-	hypothetical protein
15	 66.85	0	13033..13572	+	179	188591862	-	RALTA_B0016	-	hypothetical protein
16	 64.73	0	13569..14291	+	240	188591863	-	RALTA_B0018	-	Putative cyclic nucleotide-binding protein
17	 69.37	0	14350..15423	-	357	188591864	-	RALTA_B0019	-	conserved hypothetical protein, DUF1839
18	 67.68	0	15789..17363	+	524	188591865	manC	RALTA_B0020	-	Mannose-1-phosphate guanylyltransferase
19	 70.39	0	17474..19810	+	778	188591866	-	RALTA_B0021	-	tyrosine protein kinase
20	 71.46	0	19909..21723	+	604	188591867	-	RALTA_B0022	-	putative hydrolase
21	 63.23	-1	21934..23010	+	358	188591868	ISRta3.1	RALTA_B0023	-	Transposase, IS110 family
22	 63.23	-1	24238..25314	-	358	188591869	ISRta3.2	RALTA_B0025	-	transposase, IS110 family
23	 67.69	0	25720..27969	-	749	188591870	wzc	RALTA_B0027	-	tyrosine-protein kinase
24	 69.44	0	27966..28469	-	167	188591871	wzb	RALTA_B0028	-	low molecular weight protein-tyrosine-phosphatase
25	 67.76	0	28473..29666	-	397	188591872	-	RALTA_B0029	-	putative exopolysaccharide export outer membrane protein, putative precursor
26	 68.47	0	29825..30379	-	184	188591873	-	RALTA_B0030	-	putative maltose O-acetyltransferase
27	 71.38	0	30625..31749	+	374	188591874	-	RALTA_B0031	-	Putative glycosyl transferase
28	 69.15	0	31746..32471	-	241	188591875	-	RALTA_B0032	-	putative polysaccharide deacetylase
29	 71.45	0	32745..33977	+	410	188591876	-	RALTA_B0033	-	putative glycosyl transferase
30	 69.83	0	33974..35239	+	421	188591877	-	RALTA_B0034	-	hypothetical protein
31	 72.63	+1	35236..36426	+	396	188591878	-	RALTA_B0035	-	putative glycosyl transferase
32	 69.06	0	36420..37796	+	458	188591879	-	RALTA_B0036	-	hypothetical protein
33	 70.76	0	37890..39110	+	406	188591880	-	RALTA_B0037	-	putative glycosyl transferase
34	 68.72	0	39172..39951	-	259	188591881	-	RALTA_B0038	-	conserved hypothetical protein; putative methyltransferase
35	 71.94	0	39992..41242	-	416	188591882	wcaI	RALTA_B0039	-	colanic acid biosynthesis, glycosyl transferase
36	 69.89	0	41266..42258	-	330	188591883	fcl	RALTA_B0040	-	GDP-L-fucose synthetase; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
37	 66.83	0	42287..43498	-	403	188591884	gmd	RALTA_B0041	-	GDP-mannose 4,6-dehydratase; NAD(P)-binding domain
38	 72.64	+1	43606..44559	-	317	188591885	-	RALTA_B0042	-	Putative glycosyl transferase
39	 70.85	0	44633..45613	-	326	188591886	-	RALTA_B0043	-	Putative transcriptional regulator, LuxR family
40	 75.79	+1	46332..46649	-	105	188591887	-	RALTA_B0044	-	Conserved hypothetical protein; putative exported protein
41	 68.25	0	46679..46804	-	41	188591888	-	RALTA_B0045	-	putative lipoprotein
42	 70.05	0	47113..47319	+	68	188591889	-	RALTA_B0046	-	hypothetical protein
43	 77.22	+2	47400..48659	-	419	188591890	-	RALTA_B0047	-	putative cyanate transporter (cynX), MFS family
44	 73.29	+1	48652..49089	-	145	188591891	-	RALTA_B0048	-	Guanine deaminase
45	 73.11	+1	49284..50183	+	299	188591892	-	RALTA_B0049	-	putative HTH-type transcriptional regulator, lysR family
46	 69.31	0	50162..50350	-	62	188591893	-	RALTA_B0050	-	hypothetical protein
47	 75.18	+1	50647..51339	+	230	188591894	-	RALTA_B0051	-	Putative phosphoribosyltransferase
48	 73.52	+1	51357..51881	-	174	188591895	leuD3	RALTA_B0052	-	3-isopropylmalate dehydratase small subunit
49	 73.27	+1	51934..53220	-	428	188591896	leuC3	RALTA_B0053	-	3-isopropylmalate dehydratase large subunit
50	 70.19	0	53217..54266	-	349	188591897	-	RALTA_B0054	-	conserved hypothetical protein; putative exported protein, UPF0065
51	 69.47	0	54380..55165	-	261	188591898	-	RALTA_B0055	-	Putative HTH-type transcriptional regulator, GntR family
52	 72.28	+1	55849..57486	+	545	188591899	-	RALTA_B0056	-	conserved hypothetical protein; putative exported protein
53	 69.44	0	57667..58098	+	143	188591900	-	RALTA_B0057	-	conserved hypothetical protein; putative exported protein
54	 66.38	0	58095..58796	+	233	188591901	-	RALTA_B0058	-	putative bacteriocin processing protein, Peptidase C39 family
55	 70.79	0	58807..59775	+	322	188591902	-	RALTA_B0059	-	conserved hypothetical protein; putative exported protein; contains cristalline beta-sheet repeat similar to EBV nuclear antigen 1 (EBNA-1) and fibroin
56	 67.51	0	59851..61281	+	476	188591903	-	RALTA_B0060	-	conserved hypothetical protein; putative exported protein
57	 68.03	0	61499..62011	+	170	188591904	-	RALTA_B0061	-	conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN
58	 69.04	0	62283..63419	+	378	188591905	-	RALTA_B0062	-	putative branched-chain amino acid ABC transporter, periplasmic component
59	 72.73	+1	63467..64258	+	263	188591906	-	RALTA_B0063	-	Gluconate 5-dehydrogenase (5-keto-D-gluconate 5-reductase)
60	 71.96	0	64323..65228	-	301	188591907	-	RALTA_B0064	-	putative transcriptional regulator, LysR family
61	 74.23	+1	65355..66716	+	453	188591908	-	RALTA_B0065	-	conserved hypothetical protein, DUF1446
62	 68.08	0	66727..67080	+	117	188591909	-	RALTA_B0066	-	hypothetical protein
63	 67.08	0	67122..68087	+	321	188591910	-	RALTA_B0067	-	conserved hypothetical protein, UPF0065
64	 70.00	0	68274..69323	+	349	188591911	-	RALTA_B0068	-	putative metallo-beta-lactamase; putative exported protein
65	 68.46	0	69414..69803	-	129	188591912	-	RALTA_B0069	-	putative GCN5-related N-acetyltransferase
66	 68.29	0	69999..71477	+	492	188591913	amn	RALTA_B0070	-	AMP nucleosidase
67	 62.15	-1	71555..72196	-	213	188591914	-	RALTA_B0071	-	putative virulence-related OUTER MEMBRANE SIGNAL PEPTIDE PROTEIN, OmpW family
68	 69.12	0	72540..74249	-	569	188591915	leuA2	RALTA_B0072	-	2-isopropylmalate synthase 2 (Alpha-isopropylmalate synthase 2) (Alpha-IPM synthetase 2)
69	 69.39	0	74335..74481	-	48	188591916	-	RALTA_B0073	-	hypothetical protein
70	 70.86	0	74849..76207	+	452	188591917	-	RALTA_B0074	-	putative lipoprotein
71	 75.96	+1	76606..76917	-	103	188591918	-	RALTA_B0075	-	conserved hypothetical protein, putative transmembrane protein
72	 68.93	0	76932..78788	-	618	188591919	feoB	RALTA_B0076	-	Ferrous iron transport protein B
73	 70.19	0	78803..79114	-	103	188591920	feoA	RALTA_B0077	-	Ferrous iron transport protein A
74	 69.98	0	79480..80415	-	311	188591921	-	RALTA_B0078	-	putative transcriptional regulator, LysR family
75	 72.77	+1	80537..82339	+	600	188591922	-	RALTA_B0079	-	Acyl-CoA dehydrogenase
76	 68.00	0	82464..83438	+	324	188591923	-	RALTA_B0080	-	conserved hypothetical protein, UPF0065
77	 70.60	0	83461..84603	+	380	188591924	-	RALTA_B0081	-	putative deshydratase, CoA-transferase; L-carnitine dehydratase/bile acid-inducible protein family
78	 67.48	0	84772..86493	-	573	188591925	glcA	RALTA_B0082	-	glycolate permease (LctP family)
79	 68.95	0	86745..88190	-	481	188591926	-	RALTA_B0083	-	putative electron transport protein, iron-sulfur cluster binding prot
80	 71.94	0	88187..88888	-	233	188591927	-	RALTA_B0084	-	conserved hypothetical protein, DUF162
81	 70.63	0	88885..89667	-	260	188591928	-	RALTA_B0085	-	conserved hypothetical protein, DUF224
82	 71.67	0	89793..90512	+	239	188591929	-	RALTA_B0086	-	putative transcriptional regulator, GntR family
83	 69.08	0	90726..91763	-	345	188591930	-	RALTA_B0087	-	conserved hypothetical protein, putative Membrane protein
84	 69.34	0	91999..93381	+	460	188591931	eutB	RALTA_B0088	-	ethanolamine ammonia-lyase, heavy chain
85	 74.88	+1	93391..94206	+	271	188591932	eutC	RALTA_B0089	-	ethanolamine ammonia-lyase, light chain
86	 63.71	-1	94288..94761	-	157	188591933	-	RALTA_B0090	-	conserved hypothetical protein, YbaK/prolyl-tRNA synthetase associated domain
87	 66.67	0	94846..95763	-	305	188591934	-	RALTA_B0091	-	putative transcriptional regulator, LysR family
88	 66.59	0	95843..97156	-	437	188591935	kgtP	RALTA_B0092	-	alpha-ketoglutarate permease (MFS family)
89	 68.63	0	97639..97944	+	101	188591936	-	RALTA_B0093	-	hypothetical protein
90	 63.90	0	98111..98905	+	264	188591937	fpr	RALTA_B0094	-	FERREDOXIN--NADP REDUCTASE OXIDOREDUCTASE
91	 68.73	0	98963..100369	-	468	188591938	fumC	RALTA_B0095	-	fumarase C (fumarate hydratase)
92	 70.17	0	100508..101392	+	294	188591939	-	RALTA_B0096	-	putative transcriptional regulator, LysR family
93	 66.38	0	101426..101776	-	116	188591940	-	RALTA_B0097	-	conserved hypothetical protein, DUF326
94	 71.20	0	102097..102471	+	124	188591941	-	RALTA_B0098	-	hypothetical protein
95	 71.03	0	102465..104480	-	671	188591942	-	RALTA_B0099	-	putative diguanylate cyclase (GGDEF domain) with PAS sensor domain and HAMP domain
96	 73.11	+1	104742..107936	+	1064	188591943	-	RALTA_B0100	-	putative diguanylate cyclase (GGDEAF) and c-di-GMP phosphodiesterase (EAL domain) with Chase and PAS domains.
97	 73.32	+1	108068..109180	+	370	188591944	-	RALTA_B0101	-	putative ABC transporter, ATP-binding component
98	 71.71	0	109180..110904	+	574	188591945	-	RALTA_B0102	-	putative ABC transporter, inner membrane component
99	 66.57	0	110968..112002	+	344	188591946	-	RALTA_B0103	-	putative ABC transporter, periplasmic binding component
100	 66.97	0	112101..112430	-	109	188591947	-	RALTA_B0104	-	conserved hypothetical protein; putative transmembrane protein
67.90	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.