IslandPath Analysis: Dehalococcoides sp. CBDB1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.26   STD DEV: 3.75
Dehalococcoides sp. CBDB1, complete genome - 1..1395502
1458 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 49.44	0	261..1595	+	444	73747957	dnaA	cbdb_A1	-	chromosomal replication initiator protein DnaA
2	 50.67	0	1926..3200	+	424	73747958	obgE	cbdb_A2	-	GTPase ObgE
3	 49.27	0	3188..3802	+	204	73747959	nadD	cbdb_A3	-	nicotinate (nicotinamide) nucleotideadenylyltransferase
4	 50.91	0	3884..5812	-	642	73747960	gyrB	cbdb_A4	-	DNA gyrase, subunit B
5	 51.26	+1	6017..8203	-	728	73747961	relA	cbdb_A5	-	GTP pyrophosphokinase
6	 51.47	+1	8331..9587	+	418	73747962	hisS	cbdb_A7	-	histidyl-tRNA synthetase
7	 48.54	0	9584..10747	+	387	73747963	-	cbdb_A9	-	hypothetical protein
8	 52.56	+1	10744..11367	-	207	73747964	-	cbdb_A10	-	hypothetical protein
9	 49.19	0	11400..12320	-	306	73747965	ilvE	cbdb_A11	-	branched-chain amino acid aminotransferase
10	 51.41	+1	12474..13646	-	390	73747966	dinB	cbdb_A12	-	DNA polymerase IV
11	 52.38	+1	13646..13834	-	62	73747967	-	cbdb_A13	-	hypothetical protein
12	 48.59	0	13905..14717	-	270	73747968	pyrF	cbdb_A14	-	orotidine 5'-phosphate decarboxylase
13	 47.13	0	14864..15559	+	231	73747969	-	cbdb_A15	-	hypothetical protein
14	 45.16	0	15598..16392	+	264	73747970	-	cbdb_A17	-	putative lipoprotein
15	 51.94	+1	16438..17754	+	438	73747971	folC	cbdb_A18	-	putative folylpolyglutamate synthetase
16	 43.52	0	17737..17952	-	71	73747972	-	cbdb_A19	-	hypothetical protein
17	 44.70	0	17966..18229	-	87	73747973	-	cbdb_A20	-	hypothetical protein
18	 51.30	+1	18532..18993	+	153	73747974	dtd	cbdb_A23	-	D-tyrosyl-tRNA deacylase
19	 43.82	0	19045..19473	+	142	73747975	-	cbdb_A24	-	FUR family transcriptional regulator
20	 47.14	0	19527..20279	-	250	73747976	-	cbdb_A26	-	hypothetical protein
21	 47.55	0	20382..20768	+	128	73747977	-	cbdb_A25	-	hypothetical protein
22	 46.81	0	20850..20990	-	46	73747978	-	cbdb_A27	-	hypothetical protein
23	 50.36	0	21047..23437	-	796	73747979	comeC	cbdb_A29	-	DNA internalization-related competence protein,ComEC
24	 46.48	0	23434..24087	-	217	73747980	comeA	cbdb_A31	-	putative competence protein ComEA
25	 50.30	0	24111..24776	-	221	73747981	-	cbdb_A32	-	putative potassium uptake protein, TrkA-like protein
26	 49.38	0	24781..25185	-	134	73747982	-	cbdb_A33	-	putative potassium uptake protein, fragment
27	 44.99	0	25189..25617	-	142	73747983	-	cbdb_A34	-	universal stress family protein
28	 50.48	0	25694..27139	-	481	73747984	trkH	cbdb_A35	-	putative Trk system potassium uptake protein
29	 49.60	0	27143..28507	-	454	73747985	trkA	cbdb_A37	-	potassium transporter peripheral membrane component
30	 41.83	-1	28511..28663	-	50	73747986	-	cbdb_B1	-	hypothetical protein
31	 47.32	0	28795..29745	-	316	73747987	-	cbdb_A39	-	cation efflux family protein
32	 46.35	0	29889..30518	+	209	73747988	-	cbdb_A40	-	hypothetical protein
33	 50.40	0	30511..31512	+	333	73747989	-	cbdb_A41	-	putative phosphate transporter
34	 49.44	0	31509..32129	-	206	73747990	gmk	cbdb_A42	-	putative guanylate kinase
35	 47.08	0	32107..32397	-	96	73747991	-	cbdb_A43	-	hypothetical protein
36	 50.77	0	32606..33454	+	282	73747992	-	cbdb_A45	-	ferredoxin--NADP(+) reductase subunit alpha
37	 51.14	+1	33447..34844	+	465	73747993	gltA	cbdb_A46	-	putative oxidoreductase
38	 46.48	0	34841..35053	-	70	73747994	-	cbdb_A48	-	hypothetical protein
39	 48.31	0	35163..35696	-	177	73747995	-	cbdb_A50	-	hypothetical protein
40	 51.23	+1	35767..36375	-	202	73747996	-	cbdb_A52	-	SAM-dependent methyltransferase
41	 47.69	0	36386..36580	-	64	73747997	-	cbdb_A54	-	hypothetical protein
42	 51.88	+1	36722..37093	+	123	73747998	-	cbdb_A55	-	hypothetical protein
43	 52.57	+1	37229..37675	+	148	73747999	-	cbdb_A56	-	redox family protein
44	 50.63	0	37672..38775	-	367	73748000	-	cbdb_A58	-	translation-associated GTPase
45	 46.91	0	38797..39039	-	80	73748001	-	cbdb_A59	-	hypothetical protein
46	 49.57	0	39161..40195	+	344	73748002	holA	cbdb_A60	-	DNA polymerase III delta subunit-related protein
47	 48.53	0	40197..40808	+	203	73748003	-	cbdb_A62	-	hypothetical protein
48	 53.17	+1	40843..41850	+	335	73748004	-	cbdb_A63	-	transcriptional repressor, ROK family
49	 52.45	+1	41966..44581	+	871	73748005	alaS	cbdb_A65	-	alanyl-tRNA synthetase
50	 46.77	0	44628..45029	+	133	73748006	-	cbdb_A67	-	hypothetical protein
51	 51.48	+1	45051..46229	+	392	73748007	tgt	cbdb_A68	-	queuine tRNA-ribosyltransferase
52	 50.57	0	46324..47466	+	380	73748008	-	cbdb_A69	-	alcohol dehydrogenase, iron-containing
53	 51.07	+1	51080..53554	+	824	73748009	clpC	cbdb_A70	-	ATP-dependent Clp protease, ATP-binding subunit
54	 51.83	+1	53999..55393	+	464	73748010	radA	cbdb_A72	-	DNA repair protein RadA
55	 50.58	0	55380..56063	+	227	73748011	ispD	cbdb_A74	-	2-C-methyl-D-erythritol 4-phosphatecytidylyltransferase
56	 52.95	+1	56069..56542	+	157	73748012	ispF	cbdb_A75	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
57	 48.33	0	56546..57919	+	457	73748013	cysS	cbdb_A76	-	cysteinyl-tRNA synthetase
58	 45.61	0	58013..58810	-	265	73748014	-	cbdb_B2	-	putative recombinase protein
59	 37.99	-2	58960..59667	-	235	73748015	rdhD	cbdb_A78	-	DNA-binding response regulator
60	 36.51	-2	59661..61328	-	555	73748016	rdhC	cbdb_A79	-	sensor histidine kinase
61	 42.66	-1	61449..62939	+	496	73748017	rdhA	cbdb_A80	-	putative reductive dehalogenase
62	 37.29	-2	62977..63279	+	100	73748018	rdhB	cbdb_B3	-	putative reductive dehalogenase anchoring protein
63	 51.11	+1	64108..64872	+	254	73748019	rdhF	cbdb_A81	-	hypothetical protein
64	 39.11	-2	65088..66593	+	501	73748020	rdhC	cbdb_A82	-	sensor histidine kinase
65	 37.04	-2	66580..67281	+	233	73748021	rdhD	cbdb_A83	-	DNA-binding response regulator
66	 44.04	0	67523..68989	+	488	73748022	rdhA	cbdb_A84	-	putative reductive dehalogenase
67	 39.56	-2	69010..69282	+	90	73748023	rdhB	cbdb_A85	-	putative reductive dehalogenase anchoring protein
68	 36.84	-2	70199..71053	+	284	73748024	-	cbdb_A86	-	hypothetical protein
69	 51.63	+1	71328..72092	-	254	73748025	rdhF	cbdb_A87	-	hypothetical protein
70	 38.72	-2	72179..72475	-	98	73748026	rdhB	cbdb_B4	-	putative reductive dehalogenase anchoring protein
71	 46.45	0	72513..74060	-	515	73748027	rdhA	cbdb_A88	-	putative reductive dehalogenase
72	 42.79	-1	74171..75037	-	288	73748028	rdhH	cbdb_A89	-	hypothetical protein
73	 40.64	-1	75349..76032	-	227	73748029	rdhD	cbdb_A90	-	DNA-binding response regulato
74	 38.14	-2	76013..77239	-	408	73748030	rdhC	cbdb_A91	-	sensor histidine kinase
75	 52.46	+1	77336..78820	-	494	73748031	-	cbdb_A92	-	radical SAM/B12 binding domain-containing protein
76	 52.80	+1	78843..79592	-	249	73748032	rdhI	cbdb_A93	-	radical SAM domain-containing protein
77	 51.54	+1	79589..80335	-	248	73748033	rdhH	cbdb_A95	-	hypothetical protein
78	 42.59	-1	80419..80688	-	89	73748034	rdhB	cbdb_B5	-	putative reductive dehalogenase anchoring protein
79	 45.63	0	80710..82230	-	506	73748035	rdhA	cbdb_A96	-	putative reductive dehalogenase
80	 41.51	-1	82305..82928	-	207	73748036	rdhG	cbdb_A97	-	hypothetical protein
81	 36.68	-2	82995..83891	+	298	73748037	-	cbdb_A98	-	sensor histidin kinase PAS domain-containing protein
82	 38.35	-2	83908..84186	+	92	73748038	-	cbdb_A99	-	sensor histidin kinase ATP-binding subunit
83	 36.10	-2	84186..84872	+	228	73748039	rdhD	cbdb_A100	-	LuxR family DNA-binding response regulator
84	 42.74	-1	85242..85613	+	123	73748040	-	cbdb_B6	-	hypothetical protein
85	 43.03	-1	85610..86506	+	298	73748041	-	cbdb_A101	-	hypothetical protein
86	 45.20	0	86503..88887	+	794	73748042	-	cbdb_A102	-	hypothetical protein
87	 42.60	-1	89251..90405	+	384	73748043	-	cbdb_A103	-	hypothetical protein
88	 44.87	0	90541..90774	+	77	73748044	-	cbdb_B7	-	hypothetical protein
89	 42.67	-1	90777..92714	+	645	73748045	-	cbdb_A104	-	putative type I restriction-modification system methylation subunit
90	 43.35	-1	92701..93369	+	222	73748046	-	cbdb_A105	-	putative type I restriction enzyme, specificity protein
91	 44.62	0	93366..96350	+	994	73748047	-	cbdb_A106	-	restriction enzyme type I helicase subunit
92	 46.77	0	96347..97090	+	247	73748048	-	cbdb_A107	-	putative zinc protease
93	 41.20	-1	97184..100285	+	1033	73748049	-	cbdb_A108	-	helicase
94	 40.10	-1	100287..103358	+	1023	73748050	-	cbdb_A109	-	hypothetical protein
95	 41.90	-1	103391..107662	+	1423	73748051	-	cbdb_A111	-	atp-dependent exoDNAse, exonuclease v
96	 44.34	0	108042..108350	-	102	73748052	-	cbdb_A113	-	hypothetical protein
97	 46.86	0	108539..109684	-	381	73748053	mobA	cbdb_A115	-	putative molybdopterin-guanine dinucleotide biosynthesis protein A
98	 48.84	0	109685..110374	-	229	73748054	-	cbdb_A116	-	hypothetical protein
99	 50.61	0	110397..113609	-	1070	73748055	-	cbdb_A118	-	molybdopterin oxidoreductase
100	 48.31	0	113602..114783	-	393	73748056	-	cbdb_A120	-	putative molybdopterin oxidoreductase, membrane subunit
47.26	MEAN

3.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.