IslandPath Analysis: Ehrlichia ruminantium str. Welgevonden



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.17   STD DEV: 3.39
Ehrlichia ruminantium str. Welgevonden, complete genome - 1..1512977
958 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.25	0	16..849	-	277	58578665	nadC	ERWE_CDS_00010	-	nicotinate-nucleotide pyrophosphorylase
2	 26.87	0	957..1544	+	195	58578666	-	ERWE_CDS_00020	-	hypothetical protein
3	 31.06	0	1552..2034	-	160	58578667	ruvC	ERWE_CDS_00030	-	crossover junction endodeoxyribonuclease RuvC
4	 32.24	0	2223..3047	-	274	58578668	coxC	ERWE_CDS_00040	-	putative cytochrome c oxidase polypeptide III
5	 31.65	0	3142..4149	-	335	58578669	hemE	ERWE_CDS_00050	-	uroporphyrinogen decarboxylase
6	 27.84	0	4566..5438	+	290	58578670	-	ERWE_CDS_00060	-	hypothetical protein
7	 27.00	0	5435..5971	-	178	58578671	-	ERWE_CDS_00070	-	hypothetical protein
8	 30.30	0	6363..7547	-	394	161598458	-	ERWE_CDS_00080	-	hypothetical protein
9	 27.47	0	7828..8577	+	249	58578673	-	ERWE_CDS_00090	-	hypothetical protein
10	 30.70	0	8592..9539	+	315	58578674	nadA	ERWE_CDS_00100	-	quinolinate synthetase
11	 31.48	0	9699..10076	-	125	58578675	fdxA	ERWE_CDS_00110	-	ferredoxin
12	 38.01	+2	10287..11462	+	391	58578676	-	ERWE_CDS_00120	-	hypothetical protein
13	 30.84	0	12114..14519	-	801	58578677	virD4	ERWE_CDS_00130	-	putative virD4 protein
14	 33.83	+1	14560..15558	-	332	58578678	virB11	ERWE_CDS_00140	-	VirB11 protein
15	 33.04	0	15582..16928	-	448	58578679	virB10	ERWE_CDS_00150	-	VirB10 protein
16	 26.62	-1	16949..17752	-	267	58578680	trbG	ERWE_CDS_00160	-	putative conjugal transfer protein trbG precursor
17	 30.19	0	17736..18434	-	232	58578681	-	ERWE_CDS_00170	-	hypothetical protein
18	 28.41	0	18590..19705	-	371	58578682	ribA	ERWE_CDS_00180	-	GTP cyclohydrolase II
19	 28.83	0	21492..22556	-	354	58578683	-	ERWE_CDS_00190	-	hypothetical protein
20	 23.96	-1	22632..23111	-	159	58578684	-	ERWE_CDS_00200	-	hypothetical protein
21	 32.15	0	23201..24046	-	281	58578685	dapF	ERWE_CDS_00210	-	diaminopimelate epimerase
22	 23.84	-1	24229..24660	-	143	58578686	-	ERWE_CDS_00220	-	hypothetical protein
23	 30.30	0	25737..26924	+	395	58578687	pgk	ERWE_CDS_00230	-	phosphoglycerate kinase
24	 29.39	0	28508..29674	-	388	58578688	xseA	ERWE_CDS_00240	-	putative exodeoxyribonuclease VII large subunit
25	 27.54	0	29671..29877	-	68	58578689	-	ERWE_CDS_00250	-	hypothetical protein
26	 26.09	-1	29874..30080	-	68	58578690	xseA	ERWE_CDS_00260	-	hypothetical protein
27	 26.55	-1	30077..30754	-	225	58578691	-	ERWE_CDS_00270	-	hypothetical protein
28	 32.98	0	31022..31876	+	284	161598457	dapD	ERWE_CDS_00280	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
29	 30.83	0	32340..33659	+	439	58578693	trmE	ERWE_CDS_00290	-	tRNA modification GTPase TrmE
30	 29.71	0	35803..36354	-	183	58578694	dfp	ERWE_CDS_00300	-	phosphopantothenoylcysteine decarboxylase
31	 29.79	0	36444..38477	+	677	58578695	recG	ERWE_CDS_00310	-	ATP-dependent DNA helicase RecG
32	 20.44	-2	39809..40033	-	74	58578696	-	ERWE_CDS_00320	-	hypothetical protein
33	 28.35	0	40841..41803	+	320	58578697	-	ERWE_CDS_00330	-	hypothetical protein
34	 31.14	0	43669..44124	-	151	58578698	dksA	ERWE_CDS_00340	-	DNAK suppressor protein
35	 27.15	0	44237..44899	+	220	58578699	ccmb	ERWE_CDS_00350	-	Heme exporter protein B
36	 30.65	0	45034..45966	+	310	58578700	zitB	ERWE_CDS_00360	-	Zinc transporter zitB
37	 26.98	0	46429..47058	+	209	58578701	-	ERWE_CDS_00370	-	hypothetical protein
38	 31.60	0	47697..47984	-	95	58578702	rpsT	ERWE_CDS_00380	-	30S ribosomal protein S20
39	 30.37	0	49732..52329	-	865	58578703	polA	ERWE_CDS_00390	-	DNA polymerase I
40	 28.80	0	53530..53838	+	102	58578704	-	ERWE_CDS_00400	-	hypothetical protein
41	 30.83	0	54169..55086	+	305	58578705	argF	ERWE_CDS_00410	-	ornithine carbamoyltransferase
42	 23.50	-1	55818..56000	+	60	58578706	-	ERWE_CDS_00420	-	hypothetical protein
43	 28.69	0	56001..57119	+	372	58578707	recF	ERWE_CDS_00430	-	recombination protein F
44	 34.47	+1	57688..58479	-	263	58578708	-	ERWE_CDS_00440	-	hypothetical protein
45	 34.25	+1	58507..59052	-	181	58578709	def	ERWE_CDS_00450	-	peptide deformylase
46	 31.13	0	59135..59860	+	241	58578710	plsC	ERWE_CDS_00460	-	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
47	 31.64	0	60688..61335	+	215	58578711	rpe	ERWE_CDS_00470	-	ribulose-phosphate 3-epimerase
48	 30.58	0	62874..63671	+	265	58578712	-	ERWE_CDS_00480	-	hypothetical protein
49	 28.89	0	63681..64400	+	239	58578713	mkl	ERWE_CDS_00490	-	ribonucleotide ABC transporter ATP-binding protein
50	 29.04	0	64925..66766	+	613	58578714	-	ERWE_CDS_00500	-	hypothetical protein
51	 28.02	0	67368..68345	-	325	58578715	ispB	ERWE_CDS_00510	-	octaprenyl-diphosphate synthase
52	 31.85	0	68781..70193	-	470	58578716	glnA	ERWE_CDS_00520	-	glutamine synthetase I
53	 31.98	0	70562..71818	+	418	58578717	tyrS	ERWE_CDS_00530	-	tyrosyl-tRNA synthetase
54	 31.44	0	71840..73054	+	404	58578718	hemA	ERWE_CDS_00540	-	5-aminolevulinate synthase
55	 23.88	-1	73223..73423	+	66	58578719	-	ERWE_CDS_00550	-	hypothetical protein
56	 27.10	0	73401..73769	-	122	58578720	-	ERWE_CDS_00560	-	hypothetical protein
57	 27.70	0	74577..75446	+	289	58578721	secF	ERWE_CDS_00570	-	preprotein translocase subunit SecF
58	 23.33	-2	76035..76244	+	69	58578722	-	ERWE_CDS_00580	-	hypothetical protein
59	 36.21	+1	76917..77819	-	300	58578723	fbaB	ERWE_CDS_00590	-	fructose-bisphosphate aldolase
60	 32.26	0	78231..88907	+	3558	58578724	-	ERWE_CDS_00600	-	hypothetical protein
61	 31.37	0	89467..90687	+	406	58578725	pdhC	ERWE_CDS_00610	-	branched-chain alpha-keto acid dehydrogenase subunit E2
62	 31.55	0	92826..94448	+	540	58578726	-	ERWE_CDS_00620	-	hypothetical protein
63	 29.87	0	95638..97050	+	470	58578727	-	ERWE_CDS_00630	-	hypothetical protein
64	 32.66	0	98564..100207	+	547	58578728	-	ERWE_CDS_00640	-	hypothetical protein
65	 34.68	+1	100197..100568	+	123	58578729	-	ERWE_CDS_00650	-	hypothetical protein
66	 33.48	0	100899..103703	+	934	58578730	-	ERWE_CDS_00660	-	hypothetical protein
67	 27.30	0	103958..104239	-	93	58578731	-	ERWE_CDS_00670	-	hypothetical protein
68	 33.96	+1	105291..106877	+	528	58578732	guaA	ERWE_CDS_00680	-	bifunctional GMP synthase/glutamine amidotransferase protein
69	 32.69	0	108614..109861	+	415	58578733	gltA	ERWE_CDS_00690	-	citrate synthase
70	 29.00	0	112237..113436	+	399	58578734	-	ERWE_CDS_00700	-	hypothetical protein
71	 32.35	0	115866..118304	+	812	58578735	valS	ERWE_CDS_00710	-	valyl-tRNA synthetase
72	 28.47	0	118353..118640	+	95	58578736	-	ERWE_CDS_00720	-	hypothetical protein
73	 28.47	0	118689..118976	+	95	58578737	-	ERWE_CDS_00730	-	hypothetical protein
74	 31.54	0	120809..121255	-	148	58578738	smpB	ERWE_CDS_00740	-	SsrA-binding protein
75	 31.76	0	121279..121914	-	211	58578739	ribB	ERWE_CDS_00750	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
76	 34.13	+1	121934..122434	-	166	58578740	greA	ERWE_CDS_00760	-	transcription elongation factor greA
77	 34.19	+1	122467..123990	-	507	58578741	atpA	ERWE_CDS_00770	-	F0F1 ATP synthase subunit alpha
78	 31.40	0	123993..124562	-	189	58578742	atpH	ERWE_CDS_00780	-	ATP synthase delta chain
79	 25.56	-1	125483..125752	-	89	58578743	-	ERWE_CDS_00790	-	hypothetical protein
80	 29.15	0	125743..126984	-	413	58578744	-	ERWE_CDS_00800	-	hypothetical protein
81	 29.86	0	126981..127757	-	258	58578745	-	ERWE_CDS_00810	-	hypothetical protein
82	 31.23	0	127766..129001	-	411	58578746	lolC	ERWE_CDS_00820	-	lipoprotein releasing system transmembrane protein lolC
83	 27.65	0	130560..131579	+	339	58578747	-	ERWE_CDS_00830	-	hypothetical protein
84	 29.53	0	132873..134789	+	638	58578748	cycK	ERWE_CDS_00840	-	cytochrome c-type biogenesis protein CycK
85	 27.88	0	134964..135806	+	280	58578749	-	ERWE_CDS_00850	-	hypothetical protein
86	 30.41	0	138037..139437	-	466	58578750	purF	ERWE_CDS_00860	-	amidophosphoribosyltransferase
87	 22.40	-2	139627..139818	+	63	58578751	-	ERWE_CDS_00870	-	hypothetical protein
88	 28.86	0	140018..140665	-	215	58578752	pth	ERWE_CDS_00880	-	peptidyl-tRNA hydrolase
89	 35.15	+1	140625..141284	-	219	58578753	rplY	ERWE_CDS_00890	-	50S ribosomal protein L25/general stress protein Ctc
90	 27.99	0	143422..144114	-	230	58578754	comF	ERWE_CDS_00900	-	putative competence protein F (DNA transformation protein comF)
91	 31.42	0	144115..145266	-	383	58578755	dapE	ERWE_CDS_00910	-	succinyl-diaminopimelate desuccinylase
92	 33.63	+1	147197..148906	-	569	58578756	kefB	ERWE_CDS_00920	-	glutathione-regulated potassium-efflux system protein kefB
93	 29.81	0	148920..149543	-	207	58578757	-	ERWE_CDS_00930	-	hypothetical protein
94	 25.41	-1	149592..150146	-	184	58578758	-	ERWE_CDS_00940	-	hypothetical protein
95	 36.74	+1	151895..152893	-	332	58578759	pdhB	ERWE_CDS_00950	-	pyruvate dehydrogenase subunit beta
96	 29.22	0	154201..156024	-	607	58578760	-	ERWE_CDS_00960	-	hypothetical protein
97	 34.59	+1	156212..157639	+	475	58578761	tldD	ERWE_CDS_00970	-	TldD protein
98	 32.14	0	158184..159275	-	363	58578762	-	ERWE_CDS_00980	-	translation-associated GTPase
99	 31.35	0	160222..160776	-	184	58578763	ispF	ERWE_CDS_00990	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
100	 31.00	0	161900..162628	-	242	58578764	ispD	ERWE_CDS_01000	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
30.17	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.