IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.26	-1	112..246	-	44	15600772	-	VCA0001	-	hypothetical protein
2	 46.43	0	1134..3110	+	658	15600773	-	VCA0002	-	hypothetical protein
3	 46.83	0	3330..3944	-	204	15600774	-	VCA0003	-	hypothetical protein
4	 44.95	0	4154..4351	+	65	15600775	-	VCA0004	-	hypothetical protein
5	 41.94	0	4445..4723	+	92	15600776	-	VCA0005	-	hypothetical protein
6	 47.36	0	4811..5530	+	239	15600777	-	VCA0006	-	hypothetical protein
7	 51.05	+1	5573..6520	+	315	15600778	-	VCA0007	-	3-hydroxyisobutyrate dehydrogenase, putative
8	 48.38	0	6624..8285	-	553	15600779	-	VCA0008	-	methyl-accepting chemotaxis protein
9	 42.56	0	8288..8482	+	64	15600780	-	VCA0009	-	hypothetical protein
10	 44.98	0	8482..8919	+	145	15600781	-	VCA0010	-	hypothetical protein
11	 50.58	0	8986..11751	-	921	15600782	-	VCA0011	-	transcriptional regulator MalT
12	 35.48	-2	11903..11995	+	30	15600783	-	VCA0012	-	hypothetical protein
13	 52.49	+1	12271..14724	+	817	15600784	-	VCA0013	-	maltodextrin phosphorylase
14	 52.09	+1	14810..16990	+	726	15600785	malQ	VCA0014	-	4-alpha-glucanotransferase
15	 52.38	+1	17196..17426	+	76	15600786	-	VCA0015	-	hypothetical protein
16	 50.57	0	17386..19386	+	666	15600787	-	VCA0016	-	glycogen branching enzyme
17	 49.13	0	19781..20299	+	172	15600788	-	VCA0017	-	hcp protein
18	 53.14	+1	20427..22511	+	694	15600789	-	VCA0018	-	vgrG protein
19	 46.73	0	22511..23398	+	295	15600790	-	VCA0019	-	hypothetical protein
20	 46.38	0	23395..26652	+	1085	15600791	-	VCA0020	-	hypothetical protein
21	 41.43	0	26653..27381	+	242	15600792	-	VCA0021	-	hypothetical protein
22	 50.00	0	27484..27885	+	133	15600793	-	VCA0022	-	glutathione S-transfersae-related protein
23	 46.88	0	28058..29098	-	346	15600794	-	VCA0023	-	hypothetical protein
24	 47.53	0	29214..30206	-	330	15600795	-	VCA0024	-	hypothetical protein
25	 49.46	0	30484..31872	+	462	15600796	-	VCA0025	-	NadC family protein
26	 45.60	0	31968..32603	-	211	15600797	-	VCA0026	-	hypothetical protein
27	 49.53	0	33035..35584	+	849	15600798	-	VCA0027	-	chitinase
28	 45.10	0	35606..35860	-	84	15600799	-	VCA0028	-	hypothetical protein
29	 47.89	0	35950..36684	+	244	15600800	-	VCA0029	-	transcriptional regulator, putative
30	 46.14	0	36685..37527	+	280	15600801	-	VCA0030	-	hypothetical protein
31	 45.53	0	37648..39213	-	521	15600802	-	VCA0031	-	methyl-accepting chemotaxis protein
32	 44.21	0	39311..39871	-	186	15600803	-	VCA0032	-	hypothetical protein
33	 48.53	0	40280..42154	+	624	15600804	-	VCA0033	-	hypothetical protein
34	 46.85	0	42214..43086	-	290	15600805	-	VCA0034	-	hypothetical protein
35	 47.52	0	43202..44026	+	274	15600806	-	VCA0035	-	phosphatidylglycerophosphatase B, putative
36	 48.85	0	44080..45297	-	405	15600807	-	VCA0036	-	serine/threonine transporter SstT
37	 47.24	0	45638..46090	-	150	15600808	-	VCA0037	-	hypothetical protein
38	 45.70	0	46104..46685	-	193	15600809	-	VCA0038	-	Sco1-related protein
39	 49.41	0	46682..47104	-	140	15600810	-	VCA0039	-	hypothetical protein
40	 48.11	0	47303..48229	-	308	15600811	-	VCA0040	-	hypothetical protein
41	 46.13	0	48768..49994	+	408	15600812	-	VCA0041	-	sodium/glutamate symporter
42	 46.64	0	50073..50831	-	252	15600813	-	VCA0042	-	hypothetical protein
43	 48.42	0	50963..51247	+	94	15600814	-	VCA0043	-	hypothetical protein
44	 48.95	0	51480..53624	+	714	15600815	-	VCA0044	-	hypothetical protein
45	 48.44	0	53551..54735	+	394	15600816	-	VCA0045	-	protease-related protein
46	 50.41	0	54727..54849	-	40	15600817	-	VCA0046	-	hypothetical protein
47	 49.51	0	54930..56060	-	376	15600818	-	VCA0047	-	hypothetical protein
48	 43.33	0	56060..56449	-	129	15600819	-	VCA0048	-	hypothetical protein
49	 47.05	0	56584..57465	-	293	15600820	-	VCA0049	-	GGDEF family protein
50	 49.38	0	57462..58190	-	242	15600821	-	VCA0050	-	hypothetical protein
51	 48.69	0	58144..59667	-	507	15600822	-	VCA0051	-	hypothetical protein
52	 49.84	0	59786..61348	-	520	15600823	-	VCA0052	-	hypothetical protein
53	 47.68	0	61320..62030	-	236	161582046	-	VCA0053	-	purine nucleoside phosphorylase
54	 35.56	-2	62116..62295	-	59	15600825	-	VCA0054	-	hypothetical protein
55	 47.88	0	62337..63305	+	322	15600826	-	VCA0055	-	hypothetical protein
56	 51.00	+1	63295..64092	+	265	15600827	-	VCA0056	-	MerR family transcriptional regulator
57	 50.78	+1	64102..65511	+	469	15600828	-	VCA0057	-	deoxyribodipyrimidine photolyase
58	 47.88	0	65520..66440	+	306	15600829	-	VCA0058	-	hypothetical protein
59	 45.00	0	66526..66885	-	119	15600830	-	VCA0059	-	major outer membrane lipoprotein
60	 44.07	0	67082..67258	+	58	15600831	-	VCA0060	-	hypothetical protein
61	 47.98	0	67304..68662	+	452	15600832	-	VCA0061	-	DEAD-box ATP dependent DNA helicase
62	 42.34	0	68659..68769	-	36	15600833	-	VCA0062	-	hypothetical protein
63	 51.05	+1	68875..70872	+	665	15600834	-	VCA0063	-	protease II
64	 50.56	0	70872..73013	+	713	15600835	-	VCA0064	-	TonB system receptor, putative
65	 50.33	0	73023..75329	+	768	15600836	-	VCA0065	-	hypothetical protein
66	 50.59	0	75326..76768	+	480	15600837	-	VCA0066	-	hypothetical protein
67	 52.41	+1	76765..77325	+	186	15600838	-	VCA0067	-	hypothetical protein
68	 48.48	0	77459..79102	-	547	15600839	-	VCA0068	-	methyl-accepting chemotaxis protein
69	 38.38	-1	79249..79347	+	32	15600840	-	VCA0069	-	hypothetical protein
70	 46.44	0	79395..80294	+	299	15600841	-	VCA0070	-	phosphate ABC transporter, periplasmic phosphate-binding protein
71	 50.20	0	80309..81292	+	327	15600842	-	VCA0071	-	phosphate ABC transporter, permease protein
72	 48.16	0	81292..82161	+	289	15600843	-	VCA0072	-	phosphate ABC transporter, permease protein
73	 47.62	0	82190..82945	+	251	15600844	-	VCA0073	-	phosphate ABC transporter, ATP-binding protein
74	 45.14	0	82992..84092	-	366	15600845	-	VCA0074	-	GGDEF family protein
75	 41.88	0	84089..84556	-	155	15600846	-	VCA0075	-	hypothetical protein
76	 48.95	0	84847..86223	-	458	15600847	-	VCA0076	-	hypothetical protein
77	 49.58	0	86658..88319	-	553	15600848	-	VCA0077	-	sulfate permease family protein
78	 40.84	-1	88624..88956	+	110	15600849	-	VCA0078	-	hypothetical protein
79	 47.80	0	89148..90440	+	430	15600850	-	VCA0079	-	hypothetical protein
80	 42.65	0	90558..92381	-	607	15600851	-	VCA0080	-	GGDEF family protein
81	 36.19	-2	92442..92546	+	34	15600852	-	VCA0081	-	hypothetical protein
82	 48.87	0	92604..93491	-	295	15600853	-	VCA0082	-	LysR family transcriptional regulator
83	 48.84	0	93581..94792	+	403	15600854	-	VCA0083	-	multidrug resistance protein D
84	 47.43	0	94834..95280	-	148	15600855	-	VCA0084	-	soxR protein
85	 46.63	0	95459..96661	+	400	15600856	-	VCA0085	-	hypothetical protein
86	 45.67	0	96762..97142	+	126	15600857	-	VCA0086	-	hypothetical protein
87	 38.18	-1	97216..97380	+	54	15600858	-	VCA0087	-	hypothetical protein
88	 49.41	0	97546..98820	-	424	15600859	-	VCA0088	-	proton/glutamate symporter
89	 37.98	-1	98848..98976	+	42	15600860	-	VCA0089	-	hypothetical protein
90	 51.34	+1	99076..99969	-	297	15600861	-	VCA0090	-	hypothetical protein
91	 46.13	0	100199..100495	+	98	15600862	-	VCA0091	-	hypothetical protein
92	 45.40	0	100666..101295	-	209	15600863	-	VCA0092	-	hypothetical protein
93	 41.38	0	101395..101568	+	57	15600864	-	VCA0093	-	hypothetical protein
94	 42.02	0	101796..102152	+	118	15600865	-	VCA0094	-	hypothetical protein
95	 47.07	0	102421..103119	+	232	15600866	-	VCA0095	-	hypothetical protein
96	 46.41	0	103162..104385	+	407	15600867	-	VCA0096	-	hypothetical protein
97	 49.09	0	104398..105114	-	238	15600868	-	VCA0097	-	hypothetical protein
98	 47.78	0	105513..106820	+	435	15600869	-	VCA0098	-	nicotinate phosphoribosyltransferase
99	 49.76	0	106851..107891	+	346	15600870	-	VCA0099	-	Gfo/Idh/MocA family oxidoreductase
100	 49.19	0	107928..108299	-	123	15600871	-	VCA0100	-	phage shock protein E
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.