IslandPath Analysis: Candidatus Blochmannia floridanus



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.77   STD DEV: 3.26
Candidatus Blochmannia floridanus, complete genome - 1..705557
583 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.71	0	1..1905	+	634	33519484	gidA	Bfl001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 26.01	0	2294..3112	+	272	33519485	atpB	Bfl002	-	F0F1 ATP synthase subunit A
3	 37.50	+2	3181..3420	+	79	33519486	atpE	Bfl003	-	F0F1 ATP synthase subunit C
4	 28.19	0	3490..3975	+	161	33519487	atpF	Bfl004	-	F0F1 ATP synthase subunit B
5	 24.36	-1	3976..4521	+	181	33519488	atpH	Bfl005	-	ATP synthase delta subunit
6	 31.32	0	4543..6084	+	513	33519489	atpA	Bfl006	-	F0F1 ATP synthase subunit alpha
7	 28.95	0	6110..6976	+	288	33519490	atpG	Bfl007	-	F0F1 ATP synthase subunit gamma
8	 33.33	+1	7006..8400	+	464	33519491	atpD	Bfl008	-	F0F1 ATP synthase subunit beta
9	 30.22	0	8460..8876	+	138	33519492	atpC	Bfl009	-	ATP synthase epsilon subunit
10	 28.40	0	9010..10407	+	465	33519493	glmU	Bfl010	-	UDP-N-acetylglucosamine pyrophosphorylase
11	 27.72	0	10537..11961	-	474	33519494	trmE	Bfl011	-	tRNA modification GTPase TrmE
12	 25.16	-1	12064..13740	-	558	33519495	yidC	Bfl012	-	putative preprotein translocase subunit YidC
13	 28.00	0	13776..14000	-	74	33519496	yidD	Bfl013	-	hypothetical protein
14	 24.24	-1	13964..14326	-	120	33519497	rnpA	Bfl014	-	RNase P, protein component
15	 35.46	+2	14374..14514	-	46	33519498	rpmH	Bfl015	-	50s ribosomal protein l34
16	 23.91	-1	14731..15834	+	367	33519499	dnaN	Bfl016	-	DNA polymerase III beta-subunit
17	 30.28	0	16096..18516	+	806	33519500	gyrB	Bfl017	-	DNA gyrase subunit B
18	 28.47	0	18765..19175	+	136	33519501	ibpA	Bfl018	-	heat shock protein A
19	 25.91	0	19346..20356	-	336	33519502	unknown	Bfl019	-	transmembrane protein
20	 27.70	0	20794..21699	+	301	33519503	glyQ	Bfl020	-	glycyl-tRNA synthetase subunit alpha
21	 25.93	0	21725..23710	+	661	33519504	glyS	Bfl021	-	glycine-tRNA synthetase, beta subunit
22	 28.21	0	23766..24389	-	207	33519505	sodA	Bfl022	-	manganese superoxide dismutase
23	 24.52	-1	24707..26794	+	695	33519506	prlC	Bfl023	-	oligopeptidase A
24	 28.15	0	26943..28562	-	539	33519507	pitA	Bfl024	-	putative low-affinity inorganic phosphate transporter
25	 26.78	0	28887..29741	+	284	33519508	ubiA	Bfl025	-	4-hydroxybenzoate octaprenyltransferase
26	 27.50	0	29903..30382	-	159	33519509	zur	Bfl026	-	zinc uptake regulation protein
27	 30.76	0	30665..32065	+	466	33519510	dnaB	Bfl027	-	replicative DNA helicase
28	 31.66	0	32202..32678	+	158	33519511	ssb	Bfl028	-	single-strand DNA-binding protein
29	 32.97	+1	33060..34706	+	548	33519512	yjcE	Bfl029	-	putative sodium/hydrogen exchanger family protein
30	 30.62	0	35103..36392	+	429	33519513	gltP	Bfl030	-	glutamate/aspartate:proton symporter
31	 24.94	-1	36578..36994	-	138	33519514	yjgF	Bfl031	-	putative translation initiation inhibitor
32	 29.69	0	37062..38105	-	347	33519515	argI	Bfl032	-	ornithine carbamoyltransferase subunit I
33	 26.20	0	38360..41260	-	966	33519516	valS	Bfl033	-	valyl-tRNA synthetase
34	 26.62	0	41257..41718	-	153	33519517	holC	Bfl034	-	DNA polymerase III, chi subunit
35	 28.78	0	41838..43352	-	504	33519518	pepA	Bfl035	-	cytosol aminopeptidase
36	 20.49	-2	43484..44596	+	370	33519519	yjgP	Bfl036	-	putative inner membrane protein
37	 21.42	-2	44598..45680	+	360	33519520	yjgQ	Bfl037	-	putative inner membrane protein
38	 28.14	0	45692..46615	-	307	33519521	yidZ	Bfl038	-	LysR family transcriptional regulator
39	 28.31	0	47224..47880	+	218	33519522	unknown	Bfl040	-	putative manganese transport system ATP-binding protein
40	 28.70	0	47930..48793	+	287	33519523	unknown	Bfl041	-	putative manganese transport system permease protein
41	 27.55	0	49103..49828	-	241	33519524	yhbG	Bfl042	-	ABC transporter ATP-binding protein
42	 23.67	-1	49841..50347	-	168	33519525	yhbN	Bfl043	-	hypothetical protein
43	 23.81	-1	50328..50936	-	202	33519526	yrbK	Bfl044	-	hypothetical protein
44	 23.92	-1	51122..51376	+	84	33519527	yrbA	Bfl045	-	hypothetical protein
45	 33.41	+1	51431..52693	+	420	33519528	murA	Bfl046	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
46	 33.62	+1	52798..54183	-	461	33519529	degQ	Bfl047	-	serine protease
47	 23.36	-1	54393..54803	-	136	33519530	yhcB	Bfl048	-	hypothetical protein
48	 28.10	0	55306..55725	+	139	33519531	rplM	Bfl049	-	50S ribosomal protein L13
49	 33.59	+1	55796..56188	+	130	33519532	rpsI	Bfl050	-	30S ribosomal subunit protein S9
50	 26.25	0	56365..56943	-	192	33519533	yraP	Bfl051	-	lipoprotein
51	 29.25	0	57241..58146	+	301	33519534	yraL	Bfl052	-	hypothetical protein
52	 25.93	0	58900..59466	+	188	33519535	yqjA	Bfl054	-	hypothetical protein
53	 31.66	0	59697..61550	-	617	33519536	rpoD	Bfl056	-	RNA polymerase sigma-70 factor
54	 26.26	0	61710..63476	-	588	33519537	dnaG	Bfl057	-	DNA primase
55	 28.24	0	63622..63837	-	71	33519538	rpsU	Bfl058	-	30S ribosomal subunit protein S21
56	 34.75	+1	64010..65071	+	353	33519539	gcp	Bfl059	-	glycoprotease
57	 27.41	0	65143..65733	-	196	33519540	ygiH	Bfl060	-	hypothetical protein
58	 23.85	-1	65861..66229	+	122	33519541	folB	Bfl061	-	dihydroneopterin aldolase, also has dihydroneopterin triphosphate 2'-epimerase activity
59	 30.58	0	66776..68011	-	411	33519542	cca	Bfl062	-	tRNA CCA-pyrophosphorylase
60	 31.81	0	68185..69624	+	479	33519543	rfaE	Bfl063	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
61	 18.15	-2	69770..70039	-	89	33519544	yqiC	Bfl064	-	hypothetical protein
62	 33.02	+1	70261..70902	+	213	33519545	ribB	Bfl065	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
63	 31.16	0	71182..71916	+	244	33519546	plsC	Bfl066	-	1-acyl-glycerol-3-phosphate acyltransferase
64	 31.29	0	72022..73197	-	391	33519547	metC	Bfl067	-	beta-cystathionase
65	 26.39	0	73702..74061	-	119	33519548	cutA	Bfl069	-	periplasmic divalent cation tolerance protein CutA
66	 37.07	+2	74437..74730	+	97	33519549	groES	Bfl070	-	co-chaperonin GroES
67	 38.69	+2	74787..76430	+	547	33519550	groEL	Bfl071	-	chaperonin GroEL
68	 28.72	0	76578..77141	+	187	33519551	efp	Bfl072	-	elongation factor P (EF-P)
69	 26.00	0	77182..80439	-	1085	33519552	yjeP	Bfl073	-	hypothetical protein
70	 28.76	0	80515..81411	-	298	33519553	psd	Bfl074	-	phosphatidylserine decarboxylase proenzyme
71	 28.73	0	81932..82474	+	180	33519554	orn	Bfl075	-	oligoribonuclease
72	 27.98	0	82974..83477	+	167	33519555	yjeE	Bfl077	-	putative nucleotide-binding protein
73	 28.17	0	83491..84750	+	419	33519556	amiB	Bfl078	-	N-acetylmuramoyl-L-alanine amidase
74	 29.01	0	84768..85739	+	323	33519557	miaA	Bfl079	-	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase
75	 30.21	0	86066..87184	+	372	33519558	hflX	Bfl080	-	HflX protein, putative GTP-binding protein
76	 30.91	0	87413..88735	+	440	33519559	hflK	Bfl081	-	HflK protein
77	 31.19	0	88740..89765	+	341	33519560	hflC	Bfl082	-	FtsH protease regulator HflC
78	 29.99	0	89881..91197	+	438	33519561	purA	Bfl083	-	adenylosuccinate synthetase
79	 30.85	0	91405..92169	+	254	33519562	yjfH	Bfl084	-	tRNA/rRNA methyltransferase
80	 23.69	-1	92399..92761	+	120	33519563	rpsF	Bfl085	-	30S ribosomal protein S6
81	 32.07	+1	92839..93075	+	78	33519564	rpsR	Bfl086	-	30S ribosomal protein S18
82	 27.16	0	93152..93637	+	161	33519565	rplI	Bfl087	-	50S ribosomal protein L9
83	 30.16	0	93801..94589	+	262	33519566	cysQ	Bfl088	-	cysQ protein
84	 24.29	-1	96536..100396	+	1286	33519567	ytfN	Bfl090	-	hypothetical protein
85	 31.85	0	100483..101022	-	179	33519568	ppa	Bfl091	-	inorganic pyrophosphatase
86	 26.56	0	101185..102159	-	324	33519569	ispB	Bfl092	-	octaprenyl-diphosphate synthase
87	 27.86	0	102286..102669	+	127	33519570	rplU	Bfl093	-	50S ribosomal protein L21
88	 34.11	+1	102659..102916	+	85	33519571	rpmA	Bfl094	-	50S ribosomal protein L27
89	 31.05	0	103318..104235	+	305	33519572	yhbZ	Bfl095	-	GTP-binding protein
90	 29.24	0	104321..104809	+	162	33519573	greA	Bfl096	-	transcription elongation factor, cleaves 3' nucleotide of paused mRNA
91	 30.27	0	105196..105816	+	206	33519574	ftsJ	Bfl097	-	cell division protein 23S rRNA methyltransferase FtsJ
92	 33.85	+1	105868..107802	+	644	33519575	ftsH	Bfl098	-	cell division protein FtsH
93	 30.97	0	107925..108770	+	281	33519576	folP	Bfl099	-	dihydropteroate synthase
94	 32.30	+1	108772..110130	+	452	33519577	mrsA	Bfl100	-	PGM/PMM-family protein
95	 30.35	0	111377..112882	+	501	33519578	nusA	Bfl103	-	transcription elongation factor NusA
96	 30.22	0	112933..115626	+	897	33519579	infB	Bfl104	-	translation initiation factor IF-2
97	 27.40	0	115697..116050	+	117	33519580	rbfA	Bfl105	-	ribosome-binding factor A (P15B protein)
98	 26.82	0	116087..116854	+	255	33519581	truB	Bfl106	-	tRNA pseudouridine 5S synthase
99	 25.64	0	116984..117256	+	90	33519582	rpsO	Bfl107	-	30S ribosomal subunit protein S15
100	 33.33	+1	117421..119514	+	697	33519583	pnp	Bfl108	-	polynucleotide phosphorylase/polyadenylase
28.77	MEAN

3.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.