IslandPath Analysis: Nitrosomonas eutropha C91



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.91   STD DEV: 4.81
Nitrosomonas eutropha C91, complete genome - 1..2661057
2444 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.72	0	35..1414	+	459	114330037	-	Neut_0001	-	chromosomal replication initiator protein DnaA
2	 43.05	-1	1619..2740	+	373	114330038	-	Neut_0002	-	DNA polymerase III, beta subunit
3	 47.20	0	2798..5227	+	809	114330039	gyrB	Neut_0003	-	DNA gyrase subunit B
4	 44.82	0	5248..5691	+	147	114330040	-	Neut_0004	-	hypothetical protein
5	 47.27	0	5747..6478	+	243	114330041	-	Neut_0005	-	pseudouridine synthase, Rsu
6	 57.55	+1	6914..8767	+	617	114330042	-	Neut_0006	-	phage integrase family protein
7	 58.67	+2	8854..9228	+	124	114330043	-	Neut_0007	-	transcriptional regulator, LysR family protein
8	 57.88	+1	9722..10381	-	219	114330044	-	Neut_0008	-	transcriptional regulator, LysR family protein
9	 56.44	+1	10750..11052	+	100	114330045	-	Neut_0009	-	transcriptional regulator, XRE family protein
10	 52.76	0	11619..12452	-	277	114330046	-	Neut_0010	-	redoxin domain-containing protein
11	 52.81	0	12740..13648	-	302	114330047	-	Neut_0011	-	transcriptional regulator, LysR family protein
12	 62.04	+2	13786..14109	+	107	114330048	-	Neut_0012	-	transposase IS3/IS911 family protein
13	 60.56	+2	14163..15014	+	283	114330049	-	Neut_0013	-	integrase catalytic subunit
14	 53.17	0	15676..17298	-	540	114330050	-	Neut_0014	-	twin-arginine translocation pathway signal
15	 58.17	+1	17925..18395	+	156	114330051	-	Neut_0016	-	transposase, IS4 family protein
16	 49.33	0	18615..20027	-	470	114330052	-	Neut_0017	-	heavy metal sensor signal transduction histidine kinase
17	 53.65	0	20033..20716	-	227	114330053	-	Neut_0018	-	two component heavy metal response transcriptional regulator, winged helix family protein
18	 48.26	0	21102..21302	-	66	114330054	-	Neut_0019	-	heavy metal transport/detoxification protein
19	 53.19	0	21966..22937	+	323	114330055	-	Neut_0020	-	BNR repeat-containing glycosyl hydrolase
20	 58.39	+1	23288..25171	+	627	114330056	-	Neut_0021	-	copper-resistance protein, CopA family protein
21	 51.55	0	26362..26910	+	182	114330057	-	Neut_0023	-	blue (type1) copper domain-containing protein
22	 48.45	0	27112..27693	+	193	114330058	-	Neut_0024	-	peptidase M23B
23	 53.29	0	27775..28260	+	161	114330059	-	Neut_0025	-	cytochrome c, class I
24	 57.65	+1	28282..30666	-	794	114330060	-	Neut_0026	-	heavy metal translocating P-type ATPase
25	 61.60	+2	32488..32724	-	78	114330061	-	Neut_0028	-	putative mercury resistance protein
26	 63.01	+2	32721..32966	-	81	114330062	-	Neut_0029	-	transcriptional regulator, MerR family protein
27	 61.80	+2	32984..34687	-	567	114330063	-	Neut_0030	-	putative mercuric reductase
28	 50.00	0	34684..34875	-	63	114330064	-	Neut_0031	-	hypothetical protein
29	 55.43	+1	34878..35153	-	91	114330065	-	Neut_0032	-	mercuric transport protein periplasmic component
30	 61.54	+2	35169..35519	-	116	114330066	-	Neut_0033	-	putative mercuric transport protein
31	 57.44	+1	35591..36067	+	158	114330067	-	Neut_0034	-	putative transcriptional regulator MerR
32	 53.91	+1	36191..36535	+	114	114330068	-	Neut_0035	-	hypothetical protein
33	 53.61	0	36832..37344	-	170	114330069	-	Neut_0036	-	blue (type1) copper domain-containing protein
34	 53.73	+1	37785..38735	-	316	114330070	-	Neut_0037	-	glycosyl transferase, group 1
35	 54.04	+1	40022..40306	+	94	114330071	-	Neut_0038	-	hypothetical protein
36	 51.46	0	40449..41783	-	444	114330072	-	Neut_0039	-	heavy metal sensor signal transduction histidine kinase
37	 51.01	0	41777..42472	-	231	114330073	-	Neut_0040	-	two component heavy metal response transcriptional regulator, winged helix family protein
38	 53.86	+1	42775..43797	-	340	114330074	-	Neut_0041	-	glycosyl transferase family protein
39	 55.68	+1	44321..44866	+	181	114330075	-	Neut_0042	-	hypothetical protein
40	 54.56	+1	44910..45842	-	310	114330076	-	Neut_0043	-	cation diffusion facilitator family transporter
41	 53.82	+1	45858..46184	+	108	114330077	-	Neut_0044	-	hypothetical protein
42	 52.24	0	46787..46987	-	66	114330078	-	Neut_0046	-	hypothetical protein
43	 53.99	+1	47236..47448	-	70	114330079	-	Neut_0047	-	hypothetical protein
44	 50.36	0	47909..48595	-	228	114330080	-	Neut_0048	-	multicopper oxidase, type 2
45	 53.53	0	49039..51375	-	778	114330081	-	Neut_0049	-	heavy metal translocating P-type ATPase
46	 51.56	0	51479..51895	-	138	114330082	-	Neut_0050	-	hypothetical protein
47	 51.67	0	51957..52436	-	159	114330083	-	Neut_0051	-	hypothetical protein
48	 53.51	0	52487..54751	-	754	114330084	-	Neut_0052	-	hypothetical protein
49	 47.03	0	54800..55288	-	162	114330085	-	Neut_0053	-	hypothetical protein
50	 53.82	+1	55436..56182	-	248	114330086	-	Neut_0054	-	cytochrome c biogenesis protein, transmembrane region
51	 58.51	+1	56862..57719	-	285	114330087	-	Neut_0056	-	tetratricopeptide domain-containing protein
52	 56.44	+1	57722..58171	-	149	114330088	-	Neut_0057	-	cytochrome C biogenesis protein
53	 52.57	0	58168..58692	-	174	114330089	-	Neut_0058	-	periplasmic protein thiol--disulphide oxidoreductase DsbE
54	 56.37	+1	58689..60650	-	653	114330090	-	Neut_0059	-	cytochrome c-type biogenesis protein CcmF
55	 55.70	+1	60656..61102	-	148	114330091	-	Neut_0060	-	CcmE/CycJ protein
56	 55.01	+1	61278..62015	-	245	114330092	-	Neut_0061	-	heme exporter protein CcmC
57	 57.60	+1	62027..62710	-	227	114330093	-	Neut_0062	-	heme exporter protein CcmB
58	 54.47	+1	62707..63321	-	204	114330094	-	Neut_0063	-	cytochrome c biogenesis protein CcmA
59	 52.66	0	63528..63884	-	118	114330095	-	Neut_0064	-	hypothetical protein
60	 52.25	0	63958..64845	-	295	114330096	-	Neut_0065	-	methyltransferase type 11
61	 51.33	0	64889..65938	-	349	114330097	-	Neut_0066	-	YVTN beta-propeller repeat-containing protein
62	 62.49	+2	66341..68854	+	837	114330098	-	Neut_0067	-	heavy metal translocating P-type ATPase
63	 53.72	0	68919..69281	+	120	114330099	-	Neut_0068	-	transcriptional regulator, MerR family protein
64	 60.34	+2	69328..71193	-	621	114330100	-	Neut_0069	-	relaxase
65	 62.82	+2	71463..71696	+	77	114330101	-	Neut_0070	-	transcriptional regulator/antitoxin, MazE
66	 53.48	0	71683..72099	+	138	114330102	-	Neut_0071	-	PilT domain-containing protein
67	 57.38	+1	72122..72487	+	121	114330103	-	Neut_0072	-	hypothetical protein
68	 59.16	+2	72484..73989	-	501	114330104	-	Neut_0073	-	hypothetical protein
69	 61.45	+2	74005..74349	-	114	114330105	-	Neut_0074	-	hypothetical protein
70	 62.59	+2	74346..75743	-	465	114330106	-	Neut_0075	-	hypothetical protein
71	 61.20	+2	75762..76694	-	310	114330107	-	Neut_0076	-	hypothetical protein
72	 60.88	+2	76691..77122	-	143	114330108	-	Neut_0077	-	hypothetical protein
73	 56.67	+1	77282..77851	-	189	114330109	-	Neut_0078	-	hypothetical protein
74	 54.76	+1	77979..78482	-	167	114330110	-	Neut_0079	-	DNA repair protein RadC
75	 60.29	+2	78680..79432	-	250	114330111	-	Neut_0080	-	hypothetical protein
76	 55.76	+1	79907..80566	-	219	114330112	-	Neut_0081	-	DSBA oxidoreductase
77	 56.00	+1	80563..81012	-	149	114330113	-	Neut_0082	-	disulphide bond formation protein DsbB
78	 58.38	+1	81058..81552	-	164	114330114	-	Neut_0083	-	hypothetical protein
79	 59.85	+2	81615..83741	-	708	114330115	-	Neut_0084	-	heavy metal translocating P-type ATPase
80	 55.95	+1	83808..84227	+	139	114330116	-	Neut_0085	-	transcriptional regulator, MerR family protein
81	 60.68	+2	84539..87430	-	963	114330117	-	Neut_0086	-	hypothetical protein
82	 64.37	+2	87430..87864	-	144	114330118	-	Neut_0087	-	putative secreted protein
83	 61.59	+2	87845..89242	-	465	114330119	-	Neut_0088	-	putative secreted protein
84	 63.90	+2	89232..90134	-	300	114330120	-	Neut_0089	-	putative secreted protein
85	 63.29	+2	90131..90811	-	226	114330121	-	Neut_0090	-	putative secreted protein
86	 62.66	+2	90808..91206	-	132	114330122	-	Neut_0091	-	hypothetical protein
87	 60.00	+2	91218..91577	-	119	114330123	-	Neut_0092	-	hypothetical protein
88	 58.12	+1	91592..91825	-	77	114330124	-	Neut_0093	-	hypothetical protein
89	 65.05	+2	91822..92193	-	123	114330125	-	Neut_0094	-	hypothetical protein
90	 52.16	0	92367..92621	+	84	114330126	-	Neut_0095	-	hypothetical protein
91	 45.95	0	92749..93477	+	242	114330127	-	Neut_0096	-	hypothetical protein
92	 56.80	+1	93530..94279	-	249	114330128	-	Neut_0097	-	hypothetical protein
93	 58.53	+1	94276..96450	-	724	114330129	-	Neut_0098	-	hypothetical protein
94	 61.51	+2	96455..96997	-	180	114330130	-	Neut_0099	-	hypothetical protein
95	 63.62	+2	96994..97584	-	196	114330131	-	Neut_0100	-	lytic transglycosylase, catalytic
96	 60.08	+2	97566..98294	-	242	114330132	-	Neut_0101	-	hypothetical protein
97	 60.98	+2	98309..98959	-	216	114330133	-	Neut_0102	-	hypothetical protein
98	 58.08	+1	98956..99537	-	193	114330134	-	Neut_0103	-	hypothetical protein
99	 56.21	+1	100122..102398	-	758	114330135	-	Neut_0104	-	helicase domain-containing protein
100	 56.73	+1	102502..102813	-	103	114330136	-	Neut_0105	-	hypothetical protein
48.91	MEAN

4.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.