IslandPath Analysis: Chromobacterium violaceum ATCC 12472



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.93   STD DEV: 6.18
Chromobacterium violaceum ATCC 12472, complete genome - 1..4751080
4407 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.10	0	245..1648	+	467	34495456	dnaA	CV_0001	-	chromosomal replication iniciator protein DnaA
2	 62.43	0	1691..2800	+	369	34495457	dnaN	CV_0002	-	DNA polymerase III subunit beta
3	 62.28	0	2931..5321	+	796	161594063	gyrB	CV_0003	-	DNA gyrase subunit B
4	 58.33	-1	5504..6547	-	347	34495459	-	CV_0004	-	transposase
5	 57.30	-1	7173..8069	+	298	34495460	-	CV_0005	-	DNA methyltransferase
6	 56.88	-1	8092..10104	+	670	34495461	-	CV_0006	-	site-specific DNA-methyltransferase, cytosine-specific
7	 58.62	-1	10106..12082	+	658	34495462	-	CV_0007	-	hypothetical protein
8	 63.88	0	12493..13101	+	202	34495463	-	CV_0008	-	hypothetical protein
9	 65.67	0	13376..13777	+	133	34495464	-	CV_0009	-	hypothetical protein
10	 65.39	0	13847..14239	+	130	34495465	-	CV_0010	-	hypothetical protein
11	 40.51	-2	14392..14976	-	194	34495466	-	CV_0011	-	hypothetical protein
12	 42.56	-2	14973..16511	-	512	34495467	-	CV_0012	-	hypothetical protein
13	 42.07	-2	16523..17014	-	163	34495468	-	CV_0013	-	hypothetical protein
14	 43.98	-2	17107..17604	-	165	34495469	-	CV_0014	-	hypothetical protein
15	 45.03	-2	17790..18704	-	304	34495470	-	CV_0015	-	hypothetical protein
16	 65.61	0	18704..21343	-	879	34495471	-	CV_0016	-	Vgr related protein
17	 55.01	-1	21787..22515	+	242	34495472	-	CV_0017	-	hypothetical protein
18	 72.72	+1	22655..24619	-	654	34495473	-	CV_0018	-	biotin carboxylase
19	 69.91	0	24623..26227	-	534	34495474	-	CV_0019	-	propionyl CoA carboxylase, beta subunit
20	 71.10	0	26243..27460	-	405	34495475	-	CV_0020	-	MFS family transporter
21	 65.35	0	27453..28664	-	403	34495476	-	CV_0021	-	hypothetical protein
22	 61.39	0	28855..29328	+	157	34495477	-	CV_0022	-	hypothetical protein
23	 65.75	0	29474..32098	+	874	34495478	-	CV_0023	-	Vgr related protein
24	 48.23	-2	32111..34252	+	713	34495479	-	CV_0024	-	hydroxyethylthiazole kinase
25	 31.80	-2	34255..34776	+	173	34495480	-	CV_0025	-	hypothetical protein
26	 37.04	-2	34819..34980	+	53	34495481	-	CV_0026	-	hypothetical protein
27	 35.03	-2	35224..35400	+	58	34495482	-	CV_0027	-	hypothetical protein
28	 63.14	0	35544..35798	-	84	34495483	-	CV_0028	-	hypothetical protein
29	 66.27	0	35832..36329	+	165	34495484	-	CV_0029	-	hypothetical protein
30	 64.51	0	36413..37759	-	448	34495485	-	CV_0030	-	hypothetical protein
31	 69.84	0	37846..39828	-	660	34495486	tar	CV_0031	-	methyl-accepting chemotaxis protein II
32	 66.40	0	40046..40807	-	253	34495487	-	CV_0032	-	MutT/nudix family protein
33	 72.20	+1	40910..41722	+	270	34495488	-	CV_0033	-	ribose-phosphate diphosphokinase
34	 68.21	0	41773..43458	+	561	34495489	nadV	CV_0034	-	putative nicotinate phosphoribosyltransferase
35	 68.60	0	43541..44005	+	154	34495490	-	CV_0035	-	hypothetical protein
36	 73.65	+1	44002..44445	+	147	34495491	-	CV_0036	-	hypothetical protein
37	 69.70	0	44452..44880	-	142	34495492	-	CV_0037	-	hypothetical protein
38	 71.23	+1	44931..46025	-	364	34495493	-	CV_0038	-	histidinol-phosphate aminotransferase
39	 67.57	0	46117..46338	-	73	34495494	-	CV_0039	-	hypothetical protein
40	 65.09	0	46395..46712	+	105	34495495	cyaY	CV_0040	-	frataxin-like protein
41	 77.02	+1	46716..47507	-	263	34495496	-	CV_0041	-	transmembrane protein
42	 73.17	+1	47632..48492	+	286	34495497	-	CV_0042	-	hypothetical protein
43	 73.42	+1	48462..49127	-	221	34495498	-	CV_0043	-	hypothetical protein
44	 69.99	0	49237..50019	+	260	34495499	cysE	CV_0044	-	serine O-acetyltransferase
45	 65.48	0	50286..51128	+	280	34495500	-	CV_0045	-	iron/ascorbate family oxidoreductase
46	 69.97	0	51295..52839	+	514	34495501	pleD	CV_0046	-	pleD gene product
47	 72.18	+1	52836..53270	-	144	34495502	-	CV_0047	-	MarR family transcriptional regulator
48	 69.43	0	53263..54783	-	506	34495503	-	CV_0048	-	transport transmembrane protein
49	 68.95	0	54989..55909	-	306	34495504	gcvA	CV_0049	-	glycine cleavage activator protein
50	 69.23	0	56272..57480	-	402	34495505	hemY	CV_0050	-	protein porphyrin biosynthesis
51	 69.46	0	57484..58521	-	345	34495506	hemX	CV_0051	-	uroporphyrin-III C-methyltransferase
52	 72.81	+1	58518..59249	-	243	34495507	hemD	CV_0052	-	uroporphyrinogen-III synthase
53	 72.32	+1	59246..59776	-	176	34495508	-	CV_0053	-	hypothetical protein
54	 71.08	0	59809..60738	-	309	161594062	hemC	CV_0054	-	porphobilinogen deaminase
55	 71.30	+1	60978..63674	+	898	34495510	ppc	CV_0055	-	phosphoenolpyruvate carboxylase
56	 66.83	0	63812..65059	-	415	34495511	-	CV_0056	-	aminopeptidase
57	 62.45	0	65154..66623	-	489	34495512	lasB	CV_0057	-	class 4 metalloprotease
58	 70.99	0	66623..66946	-	107	34495513	-	CV_0058	-	hypothetical protein
59	 68.38	0	67208..67849	-	213	34495514	pdxH	CV_0059	-	pyridoxamine 5'-phosphate oxidase
60	 66.79	0	67950..68774	-	274	34495515	-	CV_0060	-	endonuclease
61	 72.44	+1	68920..69819	-	299	34495516	-	CV_0061	-	LysR family transcriptional regulator
62	 72.06	+1	69913..70821	+	302	34495517	-	CV_0062	-	transmembrane protein
63	 67.91	0	70905..71711	-	268	34495518	-	CV_0063	-	hypothetical protein
64	 69.89	0	71708..72172	-	154	34495519	-	CV_0064	-	hypothetical protein
65	 71.68	+1	72287..75019	-	910	34495520	-	CV_0065	-	SWI/SNF family helicase
66	 69.59	0	75121..76422	-	433	34495521	-	CV_0066	-	hypothetical protein
67	 67.84	0	76572..77849	-	425	34495522	hemL	CV_0067	-	glutamate-1-semialdehyde aminotransferase
68	 66.85	0	77933..80116	-	727	34495523	-	CV_0068	-	colicin V secretion atp-binding protein
69	 72.34	+1	80118..81368	-	416	34495524	-	CV_0069	-	secretion protein
70	 64.91	0	81588..81758	-	56	34495525	-	CV_0070	-	hypothetical protein
71	 54.80	-1	81884..82060	+	58	34495526	-	CV_0071	-	hypothetical protein
72	 63.06	0	82163..83548	+	461	34495527	-	CV_0072	-	hypothetical protein
73	 69.71	0	83600..84913	-	437	34495528	pilR	CV_0073	-	two-component system, regulatory protein
74	 69.04	0	84906..86462	-	518	34495529	pilS	CV_0074	-	two-component system sensor protein
75	 68.66	0	86462..88813	-	783	34495530	parC	CV_0075	-	DNA topoisomerase IV subunit A
76	 69.50	0	88912..89370	+	152	34495531	-	CV_0076	-	ElaA protein
77	 54.71	-1	89443..92001	-	852	34495532	-	CV_0077	-	TonB-dependent receptor
78	 47.76	-2	92013..92213	+	66	34495533	-	CV_0078	-	hypothetical protein
79	 68.82	0	92405..93658	+	417	34495534	hemA	CV_0079	-	glutamyl-tRNA reductase
80	 66.02	0	93658..94734	+	358	34495535	prfA	CV_0080	-	peptide chain release factor 1
81	 73.73	+1	94886..95494	-	202	34495536	-	CV_0081	-	cytochrome c4
82	 73.53	+1	95560..95967	-	135	34495537	-	CV_0082	-	hypothetical protein
83	 72.96	+1	95977..96405	-	142	34495538	-	CV_0083	-	hypothetical protein
84	 71.34	+1	96405..96725	-	106	34495539	-	CV_0084	-	ArsR family transcriptional regulator
85	 66.95	0	96834..97190	+	118	34495540	-	CV_0085	-	hypothetical protein
86	 67.31	0	97321..99189	+	622	34495541	-	CV_0086	-	hypothetical protein
87	 69.12	0	99343..99993	+	216	34495542	-	CV_0087	-	metallo-beta-lactamase
88	 72.33	+1	99993..100310	+	105	34495543	-	CV_0088	-	methylated-DNA-[protein]-cysteine S-methyltransferase
89	 43.59	-2	100415..100570	-	51	34495544	-	CV_0089	-	hypothetical protein
90	 59.85	0	100557..101348	+	263	34495545	-	CV_0090	-	hypothetical protein
91	 68.56	0	101435..102652	-	405	34495546	-	CV_0091	-	two-component response regulator
92	 66.13	0	103148..105022	+	624	34495547	-	CV_0092	-	ribonuclease II
93	 70.23	0	105298..106953	+	551	34495548	fadD1	CV_0093	-	long chain fatty-acid CoA ligase
94	 68.25	0	107234..108055	-	273	34495549	-	CV_0094	-	hypothetical protein
95	 63.17	0	108255..109883	+	542	34495550	-	CV_0095	-	methyl-accepting chemotaxis transducer
96	 67.75	0	109984..110724	+	246	34495551	-	CV_0096	-	hypothetical protein
97	 63.02	0	110768..111589	-	273	34495552	-	CV_0097	-	hypothetical protein
98	 69.93	0	111946..113292	-	448	34495553	-	CV_0098	-	hypothetical protein
99	 67.61	0	113448..114821	-	457	34495554	pntB	CV_0099	-	NAD(P) transhydrogenase, beta subunit
100	 60.33	0	114824..115123	-	99	34495555	-	CV_0100	-	transmembrane NAD(P) transhydrogenase transmembrane protein
64.93	MEAN

6.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.