IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.18   STD DEV: 4.66
Burkholderia pseudomallei K96243 chromosome 2, complete sequence - 1..3173005
2329 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.37	-1	1..1188	+	395	53721040	-	BPSS0001	-	hypothetical protein
2	 64.46	0	1282..2325	-	347	53721041	-	BPSS0002	-	integrase
3	 65.10	0	2471..2917	-	148	53721042	-	BPSS0003	-	hypothetical protein
4	 68.64	0	2946..3554	-	202	53721043	-	BPSS0004	-	DNA-binding protein
5	 67.08	0	3722..4921	+	399	53721044	kbl	BPSS0005	-	2-amino-3-ketobutyrate coenzyme A ligase
6	 64.34	0	4934..5965	+	343	53721045	tdh	BPSS0006	-	L-threonine 3-dehydrogenase
7	 67.58	0	6300..6953	-	217	53721046	-	BPSS0007	-	hypothetical protein
8	 70.55	0	7043..7660	+	205	53721047	-	BPSS0008	-	TetR family transcriptional regulator
9	 63.12	-1	7761..8240	+	159	53721048	-	BPSS0009	-	hypothetical protein
10	 67.06	0	8455..9471	-	338	53721049	-	BPSS0010	-	hypothetical protein
11	 67.31	0	9774..10859	-	361	53721050	-	BPSS0011	-	tartrate dehydrogenase
12	 67.32	0	11028..11945	+	305	53721051	-	BPSS0012	-	LysR family regulatory protein
13	 66.96	0	12536..13213	+	225	53721052	-	BPSS0013	-	hypothetical protein
14	 65.71	0	13448..14071	+	207	53721053	-	BPSS0014	-	glutathione S-transferase like protein
15	 70.32	0	14506..14970	-	154	53721054	-	BPSS0015	-	hypothetical protein
16	 65.98	0	15050..16222	-	390	53721055	-	BPSS0016	-	phospholipase
17	 65.52	0	16285..17070	-	261	53721056	-	BPSS0017	-	3-hydroxybutyrate dehydrogenase
18	 63.70	0	17117..17857	-	246	53721057	adc	BPSS0018	-	acetoacetate decarboxylase
19	 71.52	0	18316..18912	+	198	53721058	-	BPSS0019	-	transport-related membrane protein
20	 66.67	0	18935..19228	-	97	53721059	-	BPSS0020	-	hypothetical protein
21	 68.48	0	19937..20764	-	275	53721060	-	BPSS0021	-	iron transport/utilisation related protein
22	 68.51	0	20804..21508	-	234	53721061	-	BPSS0022	-	PadR-like family regulatory protein
23	 65.10	0	21911..23317	+	468	53721062	-	BPSS0023	-	cytochrome monooxygenase related protein
24	 55.22	-2	23467..23667	+	66	53721063	-	BPSS0024	-	hypothetical protein
25	 64.67	0	23841..24692	+	283	53721064	-	BPSS0025	-	hypothetical protein
26	 66.91	0	24689..25522	+	277	53721065	-	BPSS0026	-	hypothetical protein
27	 66.98	0	25519..27462	+	647	53721066	-	BPSS0027	-	hypothetical protein
28	 68.59	0	27476..28465	+	329	53721067	-	BPSS0028	-	hypothetical protein
29	 67.95	0	28637..29257	-	206	53721068	-	BPSS0029	-	transport-related membrane protein
30	 69.24	0	29365..30258	+	297	53721069	-	BPSS0030	-	chromosome replication initiation inhibitor protein
31	 67.46	0	30314..31069	-	251	53721070	-	BPSS0031	-	anaerobic growth regulatory protein
32	 67.09	0	31219..31686	-	155	53721071	-	BPSS0032	-	universal stress-related protein
33	 62.55	-1	32074..32340	+	88	53721072	-	BPSS0033	-	hypothetical protein
34	 71.41	0	33115..34695	+	526	53721073	-	BPSS0034	-	fatty aldehyde dehydrogenase
35	 66.25	0	34692..35642	+	316	53721074	-	BPSS0035	-	gluconolactonase
36	 69.54	0	36388..36804	-	138	53721075	-	BPSS0036	-	hypothetical protein
37	 60.24	-1	37059..37307	+	82	53721076	-	BPSS0037	-	hypothetical protein
38	 66.77	0	37431..38354	+	307	53721077	-	BPSS0038	-	serine acetyltransferase
39	 67.16	0	38606..39409	-	267	53721078	-	BPSS0039	-	dehydrogenase
40	 64.86	0	39410..39964	-	184	53721079	folE	BPSS0040	-	GTP cyclohydrolase I
41	 68.50	0	40276..41202	-	308	53721080	-	BPSS0041	-	LysR family transcriptional regulator
42	 69.04	0	41316..42539	+	407	53721081	pobA	BPSS0042	-	4-hydroxybenzoate 3-monooxygenase
43	 67.37	0	42747..43460	+	237	53721082	pcaI	BPSS0043	-	3-oxoadipate CoA-transferase subunit A
44	 65.75	0	43479..44135	+	218	53721083	pcaJ	BPSS0044	-	3-oxoadipate CoA-transferase subunit B
45	 71.39	0	44232..45629	+	465	53721084	pcaB	BPSS0045	-	3-carboxy-cis,cis-muconate cycloisomerase
46	 67.56	0	45642..46427	+	261	53721085	-	BPSS0046	-	lactone hydrolase
47	 63.82	0	46443..46829	+	128	53721086	pcaC	BPSS0047	-	4-carboxymuconolactone decarboxylase
48	 69.10	0	47008..48363	+	451	53721087	pcaK	BPSS0048	-	4-hydroxybenzoate transporter
49	 66.67	0	48431..48679	-	82	53721088	-	BPSS0049	-	hypothetical protein
50	 63.43	-1	48780..49397	-	205	53721089	-	BPSS0050	-	hypothetical protein
51	 70.33	0	49592..50848	-	418	53721090	-	BPSS0051	-	hypothetical protein
52	 62.24	-1	50835..51263	-	142	53721091	-	BPSS0052	-	hypothetical protein
53	 67.09	0	51665..52855	-	396	53721092	chrA	BPSS0053	-	chromate resistance transport protein
54	 67.47	0	52852..53847	-	331	53721093	chrB	BPSS0054	-	chromate resistance exported protein
55	 62.48	-1	54765..55313	+	182	53721094	-	BPSS0055	-	hypothetical protein
56	 66.34	0	55366..55668	+	100	53721095	-	BPSS0056	-	hypothetical protein
57	 66.97	0	55704..56372	+	222	53721096	-	BPSS0057	-	RNA polymerase sigma factor
58	 70.23	0	56852..62767	+	1971	53721097	uvrA	BPSS0058	-	excinuclease ABC subunit A
59	 62.07	-1	63800..64060	-	86	53721098	-	BPSS0059	-	hypothetical protein
60	 58.97	-1	64719..64991	+	90	53721099	-	BPSS0060	-	hypothetical protein
61	 61.33	-1	65274..65573	-	99	53721100	-	BPSS0060B	-	H-NS-like DNA-binding protein
62	 63.41	-1	66124..67476	+	450	53721101	kgtP	BPSS0061	-	alpha-ketoglutarate permease
63	 66.87	0	67529..69460	+	643	53721102	-	BPSS0062	-	C4-dicarboxylate transport sensor kinase
64	 66.59	0	69444..70790	+	448	53721103	dctD	BPSS0063	-	C4-dicarboxylate transport transcriptional response regulator
65	 69.16	0	72252..72812	-	186	53721104	-	BPSS0064	-	hypothetical protein
66	 68.10	0	73093..75045	+	650	53721105	-	BPSS0065	-	hypothetical protein
67	 69.82	0	75296..75802	+	168	53721106	-	BPSS0066	-	AraC family transcription regulator
68	 67.44	0	76174..78369	+	731	53721107	-	BPSS0067	-	phospholipase C precursor
69	 59.46	-1	78867..79601	+	244	53721108	-	BPSS0068	-	hypothetical protein
70	 58.57	-2	80077..81324	+	415	53721109	-	BPSS0070	-	transposase
71	 49.51	-2	82938..83957	-	339	53721110	-	BPSS0073	-	regulatory protein
72	 52.62	-2	84049..84411	+	120	53721111	-	BPSS0074	-	hypothetical protein
73	 54.72	-2	84913..85833	+	306	53721112	-	BPSS0075	-	ABC transport system, membrane protein
74	 56.37	-2	85817..86671	+	284	53721113	-	BPSS0076	-	ABC transport system, membrane protein
75	 55.62	-2	86668..87699	+	343	53721114	-	BPSS0077	-	ABC transport system, exported substrate-binding protein
76	 60.46	-1	88287..88592	+	101	53721115	-	BPSS0077A	-	HNS-like regulatory protein
77	 68.72	0	88921..91692	+	923	53721116	-	BPSS0078	-	hypothetical protein
78	 63.19	-1	91706..93946	+	746	53721117	-	BPSS0079	-	hypothetical protein
79	 60.18	-1	94259..95614	+	451	53721118	-	BPSS0080	-	hypothetical protein
80	 67.42	0	95624..95887	+	87	53721119	-	BPSS0080a	-	hypothetical protein
81	 65.24	0	96302..96721	-	139	53721120	-	BPSS0081	-	hypothetical protein
82	 67.89	0	96741..97067	-	108	53721121	-	BPSS0082	-	thioredoxin
83	 67.39	0	97539..98231	+	230	53721122	-	BPSS0083	-	hypothetical protein
84	 66.83	0	98817..99440	-	207	53721123	-	BPSS0085	-	hypothetical protein
85	 63.10	-1	99533..101128	-	531	53721124	-	BPSS0086	-	cytochrome C oxidase-related protein
86	 64.54	0	102280..103737	-	485	53721125	-	BPSS0087	-	hypothetical protein
87	 67.70	0	105290..107227	+	645	53721126	-	BPSS0088	-	hypothetical protein
88	 62.23	-1	107294..108781	-	495	53721127	-	BPSS0089	-	hypothetical protein
89	 61.26	-1	109043..109597	-	184	53721128	-	BPSS0090	-	hypothetical protein
90	 57.33	-2	110182..110727	+	181	53721129	-	BPSS0091	-	fimbrial protein
91	 60.30	-1	110792..111529	+	245	53721130	-	BPSS0092	-	fimbria-related chaperone
92	 64.16	0	111753..114386	+	877	53721131	-	BPSS0093	-	outer membrane usher protein
93	 62.30	-1	114379..114951	+	190	53721132	-	BPSS0094	-	fimbria subunit protein
94	 59.82	-1	115016..115672	+	218	53721133	-	BPSS0095	-	hypothetical protein
95	 62.61	-1	115675..117351	+	558	53721134	-	BPSS0096	-	OmpA family protein
96	 58.52	-2	117729..118268	+	179	53721135	-	BPSS0097	-	hypothetical protein
97	 60.20	-1	118302..119801	+	499	53721136	-	BPSS0098	-	hypothetical protein
98	 60.04	-1	120001..120483	+	160	53721137	-	BPSS0099	-	hypothetical protein
99	 61.28	-1	120671..121153	+	160	53721138	-	BPSS0100	-	hypothetical protein
100	 62.15	-1	121159..122508	+	449	53721139	-	BPSS0101	-	hypothetical protein
68.18	MEAN

4.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.