IslandPath Analysis: Mycobacterium marinum M



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.55   STD DEV: 3.32
Mycobacterium marinum M, complete genome - 1..6636827
5423 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 61.51	-1	1..1533	+	510	183980036	dnaA	MMAR_0001	-	chromosomal replication initiator protein DnaA
2	 63.69	0	2074..3282	+	402	183980037	dnaN	MMAR_0002	-	DNA polymerase III (beta chain) DnaN
3	 64.42	0	3303..4460	+	385	183980038	recF	MMAR_0003	-	DNA replication and repair protein RecF
4	 68.44	0	4457..5020	+	187	183980039	-	MMAR_0004	-	hypothetical protein
5	 61.52	-1	5230..7308	+	692	183980040	gyrB	MMAR_0005	-	DNA gyrase (subunit B) GyrB
6	 64.40	0	7348..9867	+	839	183980041	gyrA	MMAR_0006	-	DNA gyrase (subunit A) GyrA
7	 70.10	+1	9951..10853	+	300	183980042	-	MMAR_0007	-	hypothetical protein
8	 70.37	+1	11363..12199	+	278	183980043	-	MMAR_0008	-	hypothetical protein
9	 64.96	0	12227..12988	-	253	183980044	-	MMAR_0009	-	transcriptional regulator
10	 70.40	+1	13099..13527	-	142	183980045	-	MMAR_0010	-	hypothetical protein
11	 63.93	0	13692..14240	+	182	183980046	ppiA	MMAR_0011	-	peptidyl-prolyl cis-trans isomerase A, PpiA
12	 65.02	0	14251..14676	-	141	183980047	-	MMAR_0012	-	hypothetical protein
13	 58.87	-2	14832..15113	-	93	183980048	-	MMAR_0013	-	hypothetical protein
14	 67.74	0	15242..15985	+	247	183980049	-	MMAR_0014	-	hypothetical protein
15	 66.52	0	16023..16709	+	228	183980050	trpG	MMAR_0015	-	anthranilate synthase component II TrpG
16	 66.24	0	16687..18567	-	626	183980051	pknB	MMAR_0016	-	serine/threonine-protein kinase B PknB
17	 68.65	0	18564..19922	-	452	183980052	pknA	MMAR_0017	-	serine/threonine-protein kinase a PknA
18	 67.41	0	19919..21394	-	491	183980053	pbpA	MMAR_0018	-	penicillin-binding protein PbpA
19	 64.75	0	21391..22800	-	469	183980054	rodA	MMAR_0019	-	cell division protein RodA
20	 67.31	0	22797..24356	-	519	183980055	pstP	MMAR_0020	-	serine/threonine phosphatase PstP
21	 62.39	0	24353..24820	-	155	183980056	-	MMAR_0021	-	hypothetical protein
22	 68.56	0	24954..26594	-	546	183980057	-	MMAR_0022	-	hypothetical protein
23	 60.37	-1	27392..27772	+	126	183980058	-	MMAR_0023	-	killer suppression protein
24	 60.07	-1	27769..28845	+	358	183980059	-	MMAR_0024	-	plasmid maintenance system antidote protein
25	 63.47	0	28826..29764	-	312	183980060	-	MMAR_0025	-	hypothetical protein
26	 60.35	-1	29745..30536	-	263	183980061	-	MMAR_0026	-	hypothetical protein
27	 59.52	-1	30550..31500	-	316	183980062	thyA_1	MMAR_0027	-	thymidylate synthase, ThyA_1
28	 63.03	0	31578..31934	-	118	183980063	-	MMAR_0028	-	hypothetical protein
29	 63.10	0	31934..32410	-	158	183980064	-	MMAR_0029	-	hypothetical protein
30	 64.29	0	33374..34174	-	266	183980065	-	MMAR_0030	-	shortchain dehydrogenase
31	 69.72	+1	34328..35080	+	250	183980066	-	MMAR_0031	-	hypothetical protein
32	 63.15	0	35105..36100	-	331	183980067	-	MMAR_0032	-	hypothetical protein
33	 68.02	0	36106..36915	-	269	183980068	-	MMAR_0033	-	hypothetical protein
34	 65.83	0	36912..38111	-	399	183980069	proV_1	MMAR_0034	-	osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport ATP-binding protein ABC transporter ProV_1
35	 62.78	0	38104..38772	-	222	183980070	-	MMAR_0035	-	ABC transporter permease
36	 57.11	-2	39071..39478	+	135	183980071	-	MMAR_0036	-	DNA-binding protein
37	 67.08	0	39580..40539	-	319	183980072	-	MMAR_0037	-	hypothetical protein
38	 66.21	0	40669..41982	+	437	183980073	amt_1	MMAR_0038	-	ammonium-transport integral membrane protein, Amt_1
39	 64.67	0	41992..42291	-	99	183980074	-	MMAR_0039	-	hypothetical protein
40	 68.01	0	42288..43256	-	322	183980075	-	MMAR_0040	-	hypothetical protein
41	 68.82	0	43370..43786	-	138	183980076	whiB5	MMAR_0041	-	transcriptional regulatory protein (Whib-like), WhiB5
42	 66.67	0	43930..44721	+	263	183980077	-	MMAR_0042	-	transcriptional regulatory protein
43	 70.17	+1	44718..45545	+	275	183980078	-	MMAR_0043	-	secreted protein P60-related protein
44	 67.45	0	45542..45922	+	126	183980079	-	MMAR_0044	-	hypothetical protein
45	 68.34	0	45997..47250	+	417	183980080	-	MMAR_0045	-	hypothetical protein
46	 64.15	0	47293..47610	+	105	183980081	-	MMAR_0046	-	hypothetical protein
47	 65.36	0	47607..47912	+	101	183980082	-	MMAR_0047	-	hypothetical protein
48	 68.38	0	48140..49246	+	368	183980083	-	MMAR_0048	-	hypothetical protein
49	 62.93	0	49334..49654	+	106	183980084	-	MMAR_0049	-	hypothetical protein
50	 63.89	0	49704..50027	+	107	183980085	-	MMAR_0050	-	hypothetical protein
51	 71.58	+1	50055..50828	-	257	183980086	-	MMAR_0051	-	hypothetical protein
52	 66.74	0	50831..52123	-	430	183980087	-	MMAR_0052	-	integral membrane protein
53	 66.50	0	52283..52888	+	201	183980088	-	MMAR_0053	-	hypothetical protein
54	 64.98	0	52875..53882	-	335	183980089	-	MMAR_0054	-	hypothetical protein
55	 68.95	+1	53923..54273	-	116	183980090	-	MMAR_0055	-	hypothetical protein
56	 72.57	+2	54358..55491	-	377	183980091	mtc28	MMAR_0056	-	secreted proline rich protein Mtc28
57	 64.76	0	55690..58620	+	976	183980092	leuS	MMAR_0057	-	leucyl-tRNA synthetase LeuS
58	 63.06	0	58650..59315	-	221	183980093	-	MMAR_0058	-	short-chain type oxidoreductase
59	 66.67	0	59356..59859	-	167	183980094	-	MMAR_0059	-	transcriptional regulatory protein
60	 63.33	0	59916..60665	-	249	183980095	-	MMAR_0060	-	glutamine ABC transporter, ATP-binding protein
61	 65.93	0	60662..62431	-	589	183980096	glnQ	MMAR_0061	-	ABC transporter permease protein GlnQ
62	 63.92	0	62513..63277	-	254	183980097	-	MMAR_0062	-	GntR family transcriptional regulator
63	 66.04	0	63388..64185	-	265	183980098	-	MMAR_0063	-	oxidoreductase
64	 67.43	0	64217..65131	-	304	183980099	-	MMAR_0064	-	hydrolase
65	 65.33	0	65222..66340	-	372	183980100	ino1	MMAR_0065	-	myo-inositol-1-phosphate synthase Ino1
66	 68.32	0	66402..66944	-	180	183980101	-	MMAR_0066	-	hypothetical protein
67	 66.67	0	67100..67969	-	289	183980102	-	MMAR_0067	-	hypothetical protein
68	 64.14	0	68082..68516	+	144	183980103	-	MMAR_0068	-	hypothetical protein
69	 65.51	0	68974..71046	+	690	183980104	ponA1	MMAR_0069	-	bifunctional penicillin-binding protein 1A/1B PonA1
70	 64.84	0	71043..72683	+	546	183980105	-	MMAR_0070	-	hypothetical protein
71	 66.04	0	72683..73321	+	212	183980106	-	MMAR_0071	-	transcriptional regulatory protein
72	 62.54	0	73445..73735	+	96	183980107	rpsF	MMAR_0072	-	30S ribosomal protein S6 RpsF
73	 68.56	0	73827..74354	+	175	183980108	ssb	MMAR_0073	-	single-strand binding protein Ssb
74	 63.14	0	74400..74654	+	84	183980109	rpsR1	MMAR_0074	-	30S ribosomal protein S18-1 RpsR1
75	 66.45	0	74697..75155	+	152	183980110	rplI	MMAR_0075	-	50S ribosomal protein L9 RplI
76	 64.35	0	75689..77071	+	460	183980111	dnaB	MMAR_0076	-	replicative DNA helicase DnaB
77	 67.13	0	77176..77604	+	142	183980112	-	MMAR_0077	-	hypothetical protein
78	 57.83	-2	77847..78095	+	82	183980113	-	MMAR_0078	-	hypothetical protein
79	 67.16	0	78147..78350	+	67	183980114	-	MMAR_0079	-	hypothetical protein
80	 66.95	0	78908..81016	-	702	183980115	coxL_2	MMAR_0080	-	carbon monoxyde dehydrogenase (large chain), CoxL_2
81	 66.17	0	81013..82017	-	334	183980116	coxM_2	MMAR_0081	-	carbon monoxyde dehydrogenase (medium chain), CoxM_2
82	 64.71	0	82014..82523	-	169	183980117	coxS_2	MMAR_0082	-	carbon monoxyde dehydrogenase (small chain), CoxS_2
83	 66.56	0	82520..83431	-	303	183980118	-	MMAR_0083	-	amidohydrolase
84	 64.20	0	84174..84782	+	202	183980119	-	MMAR_0084	-	putative short-chain dehydrogenase
85	 66.48	0	84893..87637	+	914	183980120	-	MMAR_0085	-	transcriptional regulatory protein
86	 66.92	0	88106..88885	-	259	183980121	-	MMAR_0086	-	hydrolase
87	 65.48	0	88976..90742	+	588	183980122	-	MMAR_0087	-	hypothetical protein
88	 65.51	0	90890..91492	-	200	183980123	-	MMAR_0088	-	transcriptional regulator
89	 66.46	0	91634..92122	+	162	183980124	-	MMAR_0089	-	hypothetical protein
90	 66.54	0	92022..92816	-	264	183980125	-	MMAR_0090	-	transposase, ISMyma01_aa2
91	 64.54	0	92858..93139	-	93	183980126	-	MMAR_0091	-	transposase, ISMyma01_aa1
92	 66.34	0	93232..93537	+	101	183980127	-	MMAR_0092	-	hypothetical protein
93	 61.71	-1	93566..95239	-	557	183980128	ermB	MMAR_0093	-	integral membrane efflux protein ErmB
94	 57.70	-2	95329..98193	-	954	183980129	mmpL5_3	MMAR_0094	-	transmembrane transport protein, MmpL5_3
95	 54.79	-2	98190..98627	-	145	183980130	mmpS5_3	MMAR_0095	-	membrane protein MmpS5_3
96	 61.24	-1	99141..99527	+	128	183980131	-	MMAR_0096	-	hypothetical protein
97	 55.27	-2	99527..99763	+	78	183980132	-	MMAR_0097	-	MbtH-like protein
98	 64.20	0	99926..103084	+	1052	183980133	-	MMAR_0098	-	polyketide synthase
99	 63.90	0	103081..114750	+	3889	183980134	-	MMAR_0099	-	non-ribosomal peptide synthetase
100	 55.33	-2	114798..115397	+	199	183980135	-	MMAR_0100	-	4-hydroxybenzoate synthetase (chorismate lyase)
65.55	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.