IslandPath Analysis: Colwellia psychrerythraea 34H



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.03   STD DEV: 3.50
Colwellia psychrerythraea 34H, complete genome - 1..5373180
4910 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.87	0	72..1457	+	461	71278268	dnaA	CPS_0001	-	chromosomal replication initiator protein DnaA
2	 35.42	0	1496..2599	+	367	71279230	dnaN	CPS_0002	-	DNA polymerase III, beta subunit
3	 33.77	-1	2635..3768	+	377	71280559	recF	CPS_0003	-	DNA replication and repair protein RecF
4	 37.96	0	3778..6222	+	814	71281227	gyrB	CPS_0004	-	DNA gyrase, B subunit
5	 38.46	0	6388..7323	+	311	71281893	glyQ	CPS_0005	-	glycyl-tRNA synthetase subunit alpha
6	 37.98	0	7323..9389	+	688	71281166	glyS	CPS_0006	-	glycyl-tRNA synthetase subunit beta
7	 36.19	0	9849..10163	+	104	71281828	-	CPS_0007	-	hypothetical protein
8	 30.16	-2	10196..10447	+	83	71277957	-	CPS_0008	-	hypothetical protein
9	 36.94	0	10789..11481	-	230	71278597	lepB1	CPS_0009	-	signal peptidase I
10	 38.21	0	11579..11824	-	81	71278396	sirA	CPS_0010	-	sirA protein
11	 37.47	0	11977..13908	+	643	71279252	-	CPS_0011	-	putative soluble lytic murein transglycosylase
12	 34.97	0	13936..14118	-	60	71277913	-	CPS_0012	-	hypothetical protein
13	 36.86	0	14074..15405	+	443	71280096	pepQ	CPS_0013	-	proline dipeptidase
14	 39.07	0	15591..16217	+	208	71280265	-	CPS_0014	-	hypothetical protein
15	 41.12	0	16242..17693	+	483	71281222	trkH	CPS_0015	-	Trk system potassium uptake protein TrkH
16	 40.17	0	17757..20696	-	979	71280386	-	CPS_0016	-	hypothetical protein
17	 40.09	0	21059..22435	-	458	71279830	trkA	CPS_0017	-	potassium transporter peripheral membrane component
18	 39.53	0	22465..23787	-	440	71278391	sun	CPS_0018	-	sun protein
19	 40.35	0	23796..24779	-	327	71278840	fmt	CPS_0019	-	methionyl-tRNA formyltransferase
20	 38.37	0	24812..25327	-	171	71279368	def1	CPS_0020	-	polypeptide deformylase
21	 38.58	0	25482..26567	+	361	71278476	-	CPS_0021	-	LysM domain-containing protein
22	 40.19	0	26651..27802	+	383	71277761	-	CPS_0022	-	putative DNA processing protein DprA
23	 37.13	0	27822..28295	+	157	71282268	smg	CPS_0023	-	smg protein
24	 37.97	0	28415..28975	+	186	71282080	-	CPS_0024	-	topoisomerase DNA-binding C4 zinc finger domain-containing protein
25	 39.12	0	29054..30211	-	385	71281551	purK	CPS_0025	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
26	 42.86	+1	30220..30702	-	160	71278206	purE	CPS_0026	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
27	 38.77	0	30897..31448	+	183	71279925	-	CPS_0027	-	putative RNA-binding protein
28	 21.88	-2	31497..31592	-	31	71279401	-	CPS_0028	-	hypothetical protein
29	 38.38	0	31667..32380	+	237	71280990	-	CPS_0029	-	OmpW family outer membrane protein
30	 40.34	0	32504..33331	+	275	71280837	aroE	CPS_0030	-	shikimate 5-dehydrogenase
31	 32.91	-1	33346..33579	+	77	71279533	-	CPS_0031	-	hypothetical protein
32	 39.81	0	33576..34115	-	179	71282491	-	CPS_0032	-	transferase hexapeptide domain-containing protein
33	 40.95	0	34795..34899	-	34	71280609	-	CPS_0033	-	hypothetical protein
34	 33.33	-1	36736..36828	+	30	71278445	-	CPS_0036	-	hypothetical protein
35	 33.89	-1	40709..42316	-	535	71279898	-	CPS_0041	-	response regulator
36	 37.29	0	42397..43659	+	420	71280656	-	CPS_0042	-	DEAD-box ATP dependent DNA helicase
37	 37.25	0	46140..46343	+	67	71279429	-	CPS_0045	-	hypothetical protein
38	 37.04	0	49350..49511	-	53	71279040	-	CPS_0047	-	hypothetical protein
39	 33.33	-1	51984..52076	+	30	71282016	-	CPS_0051	-	hypothetical protein
40	 36.42	0	55194..55355	-	53	71282325	-	CPS_0053	-	hypothetical protein
41	 36.43	0	56389..56775	+	128	71278093	atpI	CPS_0055	-	ATP synthase protein I
42	 37.91	0	56819..57604	+	261	71278953	atpB	CPS_0056	-	F0F1 ATP synthase subunit A
43	 38.82	0	57703..57939	+	78	71281023	atpE	CPS_0057	-	F0F1 ATP synthase subunit C
44	 40.13	0	57987..58457	+	156	71280048	atpF	CPS_0058	-	ATP synthase F0, B subunit
45	 39.33	0	58470..59003	+	177	71282060	atpH	CPS_0059	-	ATP synthase F1, delta subunit
46	 41.44	0	59019..60560	+	513	71280454	atpA	CPS_0060	-	ATP synthase F1, alpha subunit
47	 40.62	0	60598..61461	+	287	71282166	atpG	CPS_0061	-	F0F1 ATP synthase subunit gamma
48	 41.70	+1	61562..62947	+	461	71280422	atpD	CPS_0062	-	F0F1 ATP synthase subunit beta
49	 43.50	+1	63009..63431	+	140	71278528	atpC	CPS_0063	-	ATP synthase F1, epsilon subunit
50	 33.99	-1	63625..64536	-	303	71281568	-	CPS_0064	-	hypothetical protein
51	 37.46	0	64541..65194	-	217	71278638	-	CPS_0065	-	putative nicotinamide mononucleotide transporter PnuC
52	 37.08	0	65194..65460	-	88	71281798	-	CPS_0066	-	hypothetical protein
53	 40.21	0	65523..67703	-	726	71281279	-	CPS_0067	-	TonB-dependent receptor
54	 40.48	0	68317..71787	+	1156	71279659	-	CPS_0068	-	sensory box sensor histidine kinase/response regulator
55	 37.24	0	72137..73672	+	511	71280040	-	CPS_0069	-	FG-GAP repeat-containing protein
56	 44.93	+1	73721..73927	+	68	71278400	-	CPS_0070	-	hypothetical protein
57	 38.45	0	73992..75203	-	403	71279232	hemY	CPS_0071	-	hemY protein
58	 41.09	0	75200..76618	-	472	71278112	hemX	CPS_0072	-	putative uroporphyrin-III C-methyltransferase
59	 40.16	0	76642..77403	-	253	71279895	hemD	CPS_0073	-	uroporphyrinogen-III synthase
60	 42.03	+1	77468..78421	-	317	71278494	hemC	CPS_0074	-	porphobilinogen deaminase
61	 40.81	0	78446..78766	-	106	71277805	cyaY	CPS_0075	-	cyaY protein
62	 36.58	0	78921..79259	+	112	71281906	-	CPS_0076	-	hypothetical protein
63	 38.99	0	79259..80089	+	276	71278746	dapF	CPS_0077	-	diaminopimelate epimerase
64	 37.95	0	80150..80842	+	230	71280650	-	CPS_0078	-	hypothetical protein
65	 39.53	0	80867..81640	+	257	71282521	-	CPS_0079	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
66	 41.52	0	81800..83974	+	724	71279005	uvrD	CPS_0080	-	DNA-dependent helicase II
67	 38.65	0	84067..85326	+	419	71278698	-	CPS_0081	-	response regulator/GGDEF domain-containing protein
68	 37.76	0	85484..86386	-	300	71281671	rarD1	CPS_0082	-	rarD protein
69	 41.67	+1	86632..88479	+	615	71282216	recQ	CPS_0083	-	ATP-dependent DNA helicase RecQ
70	 37.72	0	88771..88884	+	37	71280930	-	CPS_0084	-	hypothetical protein
71	 41.67	+1	88978..89085	-	35	71279459	-	CPS_0085	-	hypothetical protein
72	 38.90	0	89242..91413	-	723	71277809	-	CPS_0086	-	prolyl endopeptidase
73	 39.53	0	91611..93935	-	774	71278732	-	CPS_0087	-	fatty acid cis/trans isomerase
74	 39.09	0	94117..94533	-	138	71282214	-	CPS_0088	-	glyoxalase family protein
75	 40.39	0	94589..94999	-	136	71281160	-	CPS_0089	-	glyoxalase family protein
76	 38.70	0	95064..95696	-	210	71282010	-	CPS_0090	-	hypothetical protein
77	 39.48	0	96139..96756	+	205	71277856	-	CPS_0091	-	hypothetical protein
78	 38.50	0	96846..98627	-	593	71279257	-	CPS_0092	-	anaerobic ribonucleoside triphosphate reductase
79	 38.16	0	98614..99234	-	206	71279815	-	CPS_0093	-	hypothetical protein
80	 41.28	0	99529..100497	-	322	71280633	-	CPS_0094	-	membrane protein
81	 44.37	+1	100869..102281	-	470	71281261	-	CPS_0095	-	hypothetical protein
82	 44.51	+1	102338..103813	-	491	71281941	-	CPS_0096	-	betaine aldehyde dehydrogenase
83	 41.89	+1	103871..104653	-	260	71282534	-	CPS_0097	-	hypothetical protein
84	 46.89	+2	104755..106251	-	498	71277993	mmsA1	CPS_0098	-	methylmalonate-semialdehyde dehydrogenase
85	 47.01	+2	106294..107631	-	445	71282477	-	CPS_0099	-	beta alanine--pyruvate transaminase
86	 40.93	0	107752..108672	+	306	71281924	-	CPS_0100	-	LysR family transcriptional regulator
87	 34.04	-1	108699..108839	+	46	71281407	-	CPS_0101	-	hypothetical protein
88	 35.61	0	109052..109183	-	43	71279063	-	CPS_0102	-	hypothetical protein
89	 40.45	0	109086..110195	+	369	71278418	potF1	CPS_0103	-	putrescine ABC transporter, periplasmic putrescine-binding protein
90	 39.68	0	110265..111194	-	309	71277981	-	CPS_0104	-	mechanosensitive ion channel family protein
91	 41.97	+1	111245..112414	-	389	71282366	-	CPS_0105	-	hypothetical protein
92	 39.94	0	112533..113198	-	221	71279792	-	CPS_0106	-	hypothetical protein
93	 41.90	+1	113347..114210	-	287	71278401	-	CPS_0107	-	hypothetical protein
94	 40.11	0	114323..115252	-	309	71281863	-	CPS_0108	-	hypothetical protein
95	 42.97	+1	115603..117324	-	573	71282300	-	CPS_0109	-	hypothetical protein
96	 42.72	+1	117321..118055	-	244	71281278	-	CPS_0110	-	Tat pathway signal sequence domain-containing protein
97	 38.33	0	118108..118647	-	179	71278281	-	CPS_0111	-	hypothetical protein
98	 41.88	+1	119037..119750	+	237	71278026	rph	CPS_0112	-	ribonuclease PH
99	 39.94	0	119779..120444	+	221	71278609	pyrE	CPS_0113	-	orotate phosphoribosyltransferase
100	 39.43	0	121025..122386	+	453	71281794	-	CPS_0114	-	hypothetical protein
38.03	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.