IslandPath Analysis: Helicobacter pylori G27



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.14   STD DEV: 3.74
Helicobacter pylori G27, complete genome - 1..1652982
1493 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.01	0	1..417	-	138	208433977	nusB	HPG27_1	-	N utilization substance protein B
2	 45.65	+1	419..889	-	156	208433978	-	HPG27_2	-	riboflavin synthase beta chain
3	 44.63	+1	899..1633	-	244	208433979	-	HPG27_3	-	3-deoxy-D-manno-octulosonicacid 8-phosphate synthetase
4	 39.49	0	1716..2381	-	221	208433980	icfA	HPG27_4	-	beta-carbonicanhydrase
5	 39.91	0	2503..3186	+	227	208433981	-	HPG27_5	-	orotidine5'-phosphate decarboxylase
6	 42.36	0	3187..4017	+	276	208433982	-	HPG27_6	-	pantoate-beta-alanine ligase
7	 32.67	-1	4584..4733	-	49	208433983	-	HPG27_7	-	hypothetical protein
8	 43.68	+1	5040..7040	-	666	208433984	hopZ	HPG27_8	-	outer membrane protein
9	 45.83	+1	7374..9014	-	546	208433985	groEL	HPG27_9	-	chaperone and heatshock protein
10	 40.62	0	9042..9398	-	118	208433986	groES	HPG27_10	-	cochaperone protein
11	 39.58	0	9684..11363	+	559	208433987	-	HPG27_11	-	DNA primase
12	 41.31	0	11360..12412	+	350	208433988	-	HPG27_12	-	arginino succinate synthase
13	 38.77	0	12502..13329	+	275	208433989	-	HPG27_13	-	hypothetical protein
14	 39.01	0	13476..13757	+	93	208433990	-	HPG27_14	-	hypothetical protein
15	 33.71	-1	13757..14020	+	87	208433991	-	HPG27_15	-	hypothetical protein
16	 37.86	0	14022..16385	+	787	208433992	-	HPG27_16	-	ATPase / DNA transfer protein, virB4-like protein
17	 39.45	0	16687..18027	+	446	208433993	-	HPG27_17	-	hypothetical protein
18	 40.68	0	18135..19100	+	321	208433994	cheV	HPG27_18	-	chemotaxis protein
19	 42.86	0	19097..20314	+	405	208433995	nspC	HPG27_19	-	carboxynorspermidine decarboxylase
20	 44.44	+1	20347..20922	-	191	208433996	-	HPG27_20	-	hypothetical protein
21	 40.04	0	20932..22497	-	521	208433997	-	HPG27_21	-	integral membrane protein
22	 44.44	+1	23157..25289	-	710	208433998	hopD	HPG27_22	-	outer membrane protein
23	 44.34	+1	25944..27224	-	426	208433999	gltA	HPG27_23	-	citrate synthase
24	 42.88	+1	27425..28702	+	425	208434000	icd	HPG27_24	-	isocitrate dehydrogenase
25	 37.08	0	28764..29297	+	177	208434001	-	HPG27_25	-	hypothetical protein
26	 39.27	0	29274..29930	-	218	208434002	bioD	HPG27_26	-	dethiobiotin synthetase
27	 35.28	-1	29934..31625	-	563	208434003	-	HPG27_27	-	hypothetical protein
28	 39.13	0	31734..32147	+	137	208434004	-	HPG27_28	-	hypothetical protein
29	 43.48	+1	32178..32453	+	91	208434005	-	HPG27_29	-	hypothetical protein
30	 39.67	0	32453..34678	+	741	208434006	clpA	HPG27_30	-	ATP-dependent protease
31	 42.11	0	34680..35021	+	113	208434007	-	HPG27_31	-	aspartate alpha-decarboxylase
32	 41.25	0	35024..35326	+	100	208434008	-	HPG27_32	-	hypothetical protein
33	 38.96	0	35326..36321	+	331	208434009	-	HPG27_33	-	hypothetical protein
34	 38.35	0	36329..37384	+	351	208434010	-	HPG27_34	-	NADH-ubiquinone oxidoreductase subunit
35	 41.40	0	37510..38253	+	247	208434011	comB8-1	HPG27_35	-	competence protein
36	 36.59	0	38253..39236	+	327	208434012	comB9	HPG27_36	-	competence protein
37	 41.60	0	39253..40365	+	370	208434013	comB10-1	HPG27_37	-	competence protein
38	 38.41	0	40437..41855	+	472	208434014	algA	HPG27_38	-	mannose-6-phosphate isomerase
39	 40.84	0	41865..43010	+	381	208434015	-	HPG27_39	-	GDP-D-mannosedehydratase
40	 40.91	0	43039..43935	+	298	208434016	nolK	HPG27_40	-	GDP-fucosesynthetase
41	 41.44	0	46226..47224	-	332	208434017	hypE	HPG27_41	-	hydrogenase expression/formation protein
42	 41.46	0	47227..49479	-	750	208434018	hypF	HPG27_42	-	transcriptional regulator
43	 41.09	0	49476..50468	-	330	208434019	-	HPG27_43	-	hypothetical protein
44	 39.77	0	50520..51218	-	232	208434020	-	HPG27_44	-	adenine specific DNA methyltransferase (putative type II)
45	 40.54	0	51215..52060	-	281	208434021	-	HPG27_45	-	cytosine specific DNA methyltransferase (putative type II)
46	 34.86	-1	52457..53503	-	348	208434022	-	HPG27_46	-	hypothetical protein
47	 28.46	-2	53652..53918	-	88	208434023	-	HPG27_47	-	hypothetical protein
48	 28.69	-2	53984..54910	-	308	208434024	-	HPG27_48	-	hypothetical protein
49	 42.92	+1	57419..58909	-	496	208434025	putP	HPG27_50	-	sodium/proline symporter
50	 40.53	0	58936..62493	-	1185	208434026	-	HPG27_51	-	proline/delta1-pyrroline-5-carboxylate dehydrogenase
51	 38.10	0	62823..63032	+	69	208434027	-	HPG27_52	-	hypothetical protein
52	 35.19	-1	63605..64306	+	233	208434028	-	HPG27_53	-	hypothetical protein
53	 37.01	0	64308..65042	+	244	208434029	-	HPG27_54	-	hypothetical protein
54	 39.01	0	67486..68049	+	187	208434030	-	HPG27_56	-	hypothetical protein
55	 40.61	0	68065..68325	+	86	208434031	-	HPG27_57	-	hypothetical protein
56	 38.33	0	69772..70131	+	119	208434032	-	HPG27_59	-	hypothetical protein
57	 32.77	-1	70133..70486	+	117	208434033	-	HPG27_60	-	hypothetical protein
58	 43.23	+1	72959..73756	-	265	208434034	ureH	HPG27_62	-	urease accessory protein
59	 44.67	+1	73756..74355	-	199	208434035	ureG	HPG27_63	-	urease accessory protein
60	 40.16	0	75171..75683	-	170	208434036	ureE	HPG27_65	-	urease accessory protein
61	 43.71	+1	75685..76272	-	195	208434037	ureI	HPG27_66	-	urease accessory protein / pH-dependent urea-transporter
62	 43.98	+1	76464..78173	-	569	208434038	ureB	HPG27_67	-	urease B
63	 41.39	0	78184..78903	-	239	208434039	ureA	HPG27_68	-	urease A
64	 37.58	0	79249..79695	-	148	208434040	-	HPG27_69	-	lipoprotein signal peptidase
65	 42.15	0	79716..81053	-	445	208434041	ureC	HPG27_70	-	phosphoglucosamine mutase
66	 38.15	0	81143..81412	+	89	208434042	rpsT	HPG27_71	-	ribosomal protein S20
67	 42.49	0	81536..82594	+	352	208434043	-	HPG27_72	-	peptide chain release factor RF-1
68	 42.66	0	82993..83775	+	260	208434044	horA	HPG27_73	-	outer membrane protein
69	 41.70	0	84023..85756	+	577	208434045	-	HPG27_74	-	hypothetical protein
70	 42.82	0	88206..88595	-	129	208434046	rpsI	HPG27_76	-	ribosomal protein S9
71	 41.78	0	88592..89017	-	141	208434047	rplM	HPG27_77	-	ribosomal protein L13
72	 36.51	0	89331..89519	-	62	208434048	-	HPG27_78	-	hypothetical protein
73	 40.98	0	89526..90872	-	448	208434049	-	HPG27_79	-	malate:quinone oxidoreductase
74	 39.74	0	90932..92305	-	457	208434050	-	HPG27_80	-	hypothetical protein
75	 38.90	0	92325..94373	-	682	208434051	rpoD	HPG27_81	-	RNA polymerase sigma-80 factor
76	 43.10	+1	94567..95262	-	231	208434052	-	HPG27_82	-	5'-methylthioadenosine nucleosidase
77	 42.58	0	95273..96202	-	309	208434053	-	HPG27_83	-	malonylcoenzymeA-acyl carrier protein transacylase
78	 28.85	-2	96629..97342	+	237	208434054	-	HPG27_84	-	type II restriction enzyme protein
79	 40.53	0	97456..98289	+	277	208434055	-	HPG27_85	-	typeII adenine methyltransferase
80	 36.91	0	99308..99838	-	176	208434056	-	HPG27_87	-	hypothetical protein
81	 40.32	0	99911..100855	+	314	208434057	-	HPG27_88	-	putative D-2-hydroxyacidde hydrogenase
82	 41.56	0	101070..101798	-	242	208434058	-	HPG27_89	-	hypothetical protein
83	 40.48	0	101890..103344	-	484	208434059	thrC	HPG27_90	-	threonine synthase
84	 39.05	0	103546..105573	+	675	208434060	tlpB	HPG27_91	-	methyl-accepting chemotaxis transmembrane sensory protein
85	 37.85	0	105573..106679	+	368	208434061	-	HPG27_92	-	hypothetical protein
86	 34.51	-1	106895..107656	+	253	208434062	-	HPG27_93	-	hypothetical protein
87	 37.93	0	107639..108421	-	260	208434063	-	HPG27_94	-	glycosyltransferase
88	 41.64	0	108452..110149	-	565	208434064	mcpB	HPG27_95	-	methyl-accepting chemotaxis protein
89	 39.69	0	110357..112102	-	581	208434065	cpdB	HPG27_96	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
90	 44.23	+1	112243..112710	-	155	208434066	luxS	HPG27_97	-	autoinducer-2 synthase
91	 47.33	+2	112740..113882	-	380	208434067	-	HPG27_98	-	cystathionine gamma-synthase
92	 46.19	+1	113903..114820	-	305	208434068	cysK	HPG27_99	-	cysteine synthetase
93	 34.39	-1	115061..115345	-	94	208434069	-	HPG27_100	-	hypothetical protein
94	 42.73	0	115576..117438	-	620	208434070	dnaK	HPG27_101	-	chaperone and heatshock protein 70
95	 40.10	0	117469..118044	-	191	208434071	grpE	HPG27_102	-	co-chaperone and heat shock protein 24
96	 38.15	0	118044..118874	-	276	208434072	-	HPG27_103	-	heat-inducible transcription repressor
97	 40.43	0	119330..119893	+	187	208434073	-	HPG27_104	-	L-fuculose-1-phosphate aldolase
98	 39.39	0	119914..120210	+	98	208434074	-	HPG27_105	-	hypothetical protein
99	 37.53	0	120220..122103	-	627	208434075	-	HPG27_106	-	hypothetical protein
100	 46.60	+1	122164..123708	-	514	208434076	flaB	HPG27_107	-	flagellin B
39.14	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.