IslandPath Analysis: Mesorhizobium sp. BNC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.13   STD DEV: 3.22
Mesorhizobium sp. BNC1, complete genome - 1..4412446
4064 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.83	0	85..1524	+	479	110632363	dnaA	Meso_0001	-	chromosomal replication initiation protein
2	 59.52	0	1712..2830	+	372	110632364	-	Meso_0002	-	DNA polymerase III subunit beta
3	 64.37	+1	2827..4002	+	391	110632365	recF	Meso_0003	-	recombination protein F
4	 63.25	0	4049..4810	+	253	110632366	-	Meso_0004	-	molybdopterin biosynthesis protein MoeB
5	 60.57	0	4819..5490	-	223	110632367	-	Meso_0005	-	ribulose-5-phosphate 3-epimerase
6	 57.96	0	5526..5996	-	156	110632368	-	Meso_0006	-	carbon monoxide dehydrogenase subunit G
7	 61.75	0	6186..7202	-	338	110632369	hslO	Meso_0007	-	Hsp33-like chaperonin
8	 61.17	0	7199..8107	-	302	110632370	-	Meso_0008	-	ornithine carbamoyltransferase
9	 60.86	0	8113..9318	-	401	110632371	argD	Meso_0009	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
10	 62.40	0	9623..10231	+	202	110632372	-	Meso_0010	-	global cell cycle regulator GcrA
11	 59.26	0	10390..11118	-	242	110632373	-	Meso_0011	-	phosphate uptake regulator, PhoU
12	 61.10	0	11239..12513	-	424	110632374	-	Meso_0012	-	histidine kinase
13	 56.11	-1	12593..13492	+	299	110632375	-	Meso_0013	-	hypothetical protein
14	 59.41	0	13414..15384	-	656	110632376	-	Meso_0014	-	glycosyl transferase, group 2 family protein
15	 59.40	0	15808..16647	+	279	110632377	-	Meso_0015	-	extracellular solute-binding protein
16	 62.10	0	16641..17078	-	145	110632378	-	Meso_0016	-	hypothetical protein
17	 59.99	0	17262..18923	+	553	110632379	lysK	Meso_0017	-	lysyl-tRNA synthetase
18	 62.02	0	18960..19604	-	214	110632380	-	Meso_0018	-	putative phage repressor
19	 60.63	0	19702..20331	-	209	110632381	-	Meso_0019	-	DSBA oxidoreductase
20	 59.89	0	20380..20925	-	181	110632382	-	Meso_0020	-	hypothetical protein
21	 60.50	0	20985..23207	-	740	110632383	-	Meso_0021	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
22	 62.70	0	23226..24434	-	402	110632384	-	Meso_0022	-	acetyl-CoA acetyltransferase
23	 61.83	0	24470..26266	-	598	110632385	-	Meso_0023	-	acyl-CoA dehydrogenase-like
24	 54.78	-1	26463..26933	-	156	110632386	-	Meso_0024	-	MerR family transcriptional regulator
25	 60.88	0	27215..31000	+	1261	110632387	-	Meso_0025	-	peptidoglycan binding domain-containing protein
26	 61.00	0	31206..32123	+	305	110632388	-	Meso_0026	-	hypothetical protein
27	 60.20	0	32123..32911	+	262	110632389	-	Meso_0027	-	hypothetical protein
28	 66.95	+1	32916..33617	-	233	110632390	-	Meso_0028	-	metallophosphoesterase
29	 64.52	+1	33614..36133	-	839	110632391	-	Meso_0029	-	DEAD/H associated
30	 64.41	+1	36230..37204	-	324	110632392	-	Meso_0030	-	methyltransferase type 12
31	 65.27	+1	37302..38306	+	334	110632393	-	Meso_0031	-	putative mRNA 3-end processing factor
32	 63.38	0	38306..39916	+	536	110632394	-	Meso_0032	-	ATP-dependent DNA ligase
33	 61.70	0	39955..40980	-	341	110632395	-	Meso_0033	-	hypothetical protein
34	 64.96	+1	41198..42196	+	332	110632396	-	Meso_0034	-	hypothetical protein
35	 62.25	0	42214..43845	-	543	110632397	-	Meso_0035	-	ABC transporter related
36	 61.23	0	43847..44986	-	379	110632398	-	Meso_0036	-	binding-protein-dependent transport systems inner membrane component
37	 62.12	0	44979..45902	-	307	110632399	-	Meso_0037	-	binding-protein-dependent transport systems inner membrane component
38	 59.05	0	45967..47568	-	533	110632400	-	Meso_0038	-	extracellular solute-binding protein
39	 58.50	0	48111..48881	-	256	110632401	-	Meso_0039	-	ABC transporter related
40	 59.14	0	48884..49813	-	309	110632402	-	Meso_0040	-	polar amino acid ABC transporter, inner membrane subunit
41	 58.59	0	49815..50705	-	296	110632403	-	Meso_0041	-	extracellular solute-binding protein
42	 61.11	0	50737..51528	-	263	110632404	-	Meso_0042	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
43	 60.52	0	51525..52517	-	330	110632405	-	Meso_0043	-	hypothetical protein
44	 60.61	0	52619..53956	+	445	110632406	-	Meso_0044	-	GntR family transcriptional regulator
45	 58.65	0	54005..54316	+	103	110632407	-	Meso_0045	-	hypothetical protein
46	 67.64	+2	54294..58076	-	1260	110632408	-	Meso_0046	-	hypothetical protein
47	 63.11	0	58073..62398	-	1441	110632409	-	Meso_0047	-	hypothetical protein
48	 63.24	0	62863..68703	-	1946	110632410	-	Meso_0048	-	hypothetical protein
49	 61.37	0	69133..70908	-	591	110632411	-	Meso_0049	-	TRAP dicarboxylate transporter, DctM subunit
50	 60.08	0	71025..72026	-	333	110632412	-	Meso_0050	-	TRAP dicarboxylate transporter- DctP subunit
51	 59.71	0	72123..72941	-	272	110632413	-	Meso_0051	-	DNA-binding transcriptional activator MhpR
52	 59.50	0	73067..74308	+	413	110632414	-	Meso_0052	-	monooxygenase, FAD-binding
53	 60.83	0	74305..75366	+	353	110632415	-	Meso_0053	-	gentisate 1,2-dioxygenase
54	 62.66	0	75422..76120	+	232	110632416	-	Meso_0054	-	fumarylacetoacetate (FAA) hydrolase
55	 64.03	0	76117..76761	+	214	110632417	-	Meso_0055	-	maleylacetoacetate isomerase
56	 64.21	0	76758..78266	+	502	110632418	-	Meso_0056	-	fumarase
57	 57.11	-1	79083..80045	+	320	110632419	-	Meso_0057	-	outer membrane protease
58	 61.93	0	80163..80648	+	161	110632420	-	Meso_0058	-	(2Fe-2S)-binding
59	 63.34	0	80786..83131	+	781	110632421	-	Meso_0059	-	xanthine dehydrogenase, molybdenum binding subunit apoprotein
60	 63.92	0	83154..83954	+	266	110632422	-	Meso_0060	-	molybdopterin dehydrogenase, FAD-binding
61	 56.61	-1	84140..84646	+	168	110632423	-	Meso_0061	-	hypothetical protein
62	 60.96	0	84734..86626	-	630	110632424	-	Meso_0062	-	major facilitator transporter
63	 59.36	0	86758..87606	-	282	110632425	-	Meso_0063	-	ABC transporter related
64	 61.52	0	87603..88457	-	284	110632426	-	Meso_0064	-	ABC transporter related
65	 63.68	0	88460..89395	-	311	110632427	-	Meso_0065	-	binding-protein-dependent transport systems inner membrane component
66	 61.99	0	89395..90399	-	334	110632428	-	Meso_0066	-	binding-protein-dependent transport systems inner membrane component
67	 58.50	0	90516..92144	-	542	110632429	-	Meso_0067	-	extracellular solute-binding protein
68	 58.88	0	92328..92879	+	183	110632430	-	Meso_0068	-	hypothetical protein
69	 59.00	0	93264..95207	+	647	110632431	-	Meso_0069	-	AMP-dependent synthetase and ligase
70	 63.00	0	95315..96952	-	545	110632432	pgi	Meso_0070	-	glucose-6-phosphate isomerase
71	 64.05	0	97095..98585	+	496	110632433	-	Meso_0071	-	GntR family transcriptional regulator
72	 57.01	-1	98638..99072	-	144	110632434	apaG	Meso_0072	-	ApaG
73	 57.58	-1	99193..99753	+	186	110632435	-	Meso_0073	-	CDP-alcohol phosphatidyltransferase
74	 60.91	0	99970..101514	+	514	110632436	-	Meso_0074	-	twin-arginine translocation pathway signal
75	 60.99	0	101518..102468	+	316	110632437	-	Meso_0075	-	binding-protein-dependent transport systems inner membrane component
76	 62.70	0	102465..104405	+	646	110632438	-	Meso_0076	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
77	 61.18	0	104402..105385	+	327	110632439	-	Meso_0077	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
78	 61.44	0	105382..106185	+	267	110632440	-	Meso_0078	-	creatininase
79	 62.15	0	106211..107029	+	272	110632441	-	Meso_0079	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
80	 60.42	0	107042..107953	-	303	110632442	-	Meso_0080	-	LysR family transcriptional regulator
81	 53.25	-2	109069..110886	-	605	110632443	-	Meso_0081	-	glycosyl transferase family protein
82	 49.47	-2	111509..111793	-	94	110632444	-	Meso_0082	-	hypothetical protein
83	 51.87	-2	111917..112504	-	195	110632445	-	Meso_0083	-	hypothetical protein
84	 56.55	-1	112645..113781	-	378	110632446	-	Meso_0084	-	acyltransferase 3
85	 63.43	0	114167..114598	+	143	110632447	-	Meso_0085	-	peptidoglycan binding domain-containing protein
86	 62.18	0	114577..114888	+	103	110632448	-	Meso_0086	-	hypothetical protein
87	 54.61	-2	115925..116521	+	198	110632449	-	Meso_0087	-	hypothetical protein
88	 60.95	0	116662..117939	+	425	110632450	-	Meso_0088	-	5-aminolevulinate synthase
89	 58.51	0	118021..118449	-	142	110632451	-	Meso_0089	-	large conductance mechanosensitive channel protein
90	 59.91	0	118637..122128	+	1163	110632452	-	Meso_0090	-	periplasmic sensor hybrid histidine kinase
91	 60.58	0	122150..122806	-	218	110632453	-	Meso_0091	-	two component LuxR family transcriptional regulator
92	 60.81	0	122917..123360	-	147	110632454	-	Meso_0092	-	hypothetical protein
93	 57.76	-1	123483..123830	+	115	110632455	-	Meso_0093	-	hypothetical protein
94	 58.79	0	123827..124918	+	363	110632456	-	Meso_0094	-	dihydroorotate dehydrogenase 2
95	 57.95	0	125007..125270	-	87	110632457	-	Meso_0095	-	hypothetical protein
96	 53.08	-2	125857..126570	+	237	110632458	-	Meso_0096	-	outer membrane protein, 31 kDa
97	 63.72	0	126885..127970	-	361	110632459	-	Meso_0097	-	2'-deoxycytidine 5'-triphosphate deaminase
98	 61.63	0	128168..129358	+	396	110632460	-	Meso_0098	-	O-succinylhomoserine sulfhydrylase
99	 59.12	0	129647..131209	+	520	110632461	-	Meso_0099	-	hypothetical protein
100	 56.60	-1	131399..131686	+	95	110632462	-	Meso_0100	-	hypothetical protein
61.13	MEAN

3.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.