IslandPath Analysis: Picrophilus torridus DSM 9790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.84   STD DEV: 4.42
Picrophilus torridus DSM 9790, complete genome - 1..1545895
1535 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.43	-1	1..345	+	114	48477073	-	PTO0001	-	hypothetical protein
2	 28.79	-1	524..787	-	87	48477074	-	PTO0002	-	putative protein involved in DNA replication
3	 27.06	-2	792..1748	-	318	48477075	-	PTO0003	-	DNA polymerase
4	 32.16	-1	1751..2260	-	169	48477076	-	PTO0004	-	hypothetical protein
5	 28.74	-1	2270..4009	-	579	48477077	-	PTO0005	-	DEAD/DEAH box helicase
6	 31.36	-1	3990..4649	-	219	48477078	-	PTO0006	-	hypothetical protein
7	 36.44	0	4669..5601	-	310	48477079	-	PTO0007	-	hypothetical protein
8	 34.47	0	5603..8161	-	852	48477080	-	PTO0008	-	hypothetical protein
9	 33.33	0	8158..8859	-	233	48477081	-	PTO0009	-	hypothetical protein
10	 28.72	-1	8898..9590	+	230	48477082	-	PTO0010	-	hypothetical protein
11	 35.86	0	9705..10694	-	329	48477083	-	PTO0011	-	N-acetylglucosamine kinase
12	 38.00	0	10691..11632	-	313	48477084	-	PTO0012	-	isomerizing glucosamine--fructose-6-phosphate aminotransferase
13	 38.35	0	11719..12855	+	378	48477085	-	PTO0013	-	N-acetylglucosamine-6-phosphate deacetylase
14	 38.55	0	12889..13713	+	274	48477086	murQ	PTO0014	-	N-acetylmuramic acid-6-phosphate etherase
15	 36.63	0	13759..14730	+	323	48477087	-	PTO0015	-	D-Ala-D-Ala carboxypeptidase 3
16	 38.33	0	14769..16028	+	419	48477088	-	PTO0016	-	diaminopimelate decarboxylase
17	 39.91	0	16006..16704	-	232	48477089	-	PTO0017	-	hypothetical protein
18	 40.17	0	16975..20850	+	1291	48477090	-	PTO0018	-	extracellular solute-binding protein
19	 37.50	0	20992..22047	+	351	48477091	-	PTO0019	-	beta lactamase
20	 35.02	0	22078..23442	+	454	48477092	-	PTO0020	-	beta-hexosaminidase
21	 37.37	0	23451..24539	-	362	48477093	-	PTO0021	-	O-succinylbenzoate-CoA synthase
22	 36.42	0	24615..25811	+	398	48477094	-	PTO0022	-	hypothetical protein
23	 33.73	0	25815..26321	-	168	48477095	-	PTO0023	-	hypothetical protein
24	 29.90	-1	26538..27236	-	232	48477096	-	PTO0024	-	hypothetical protein
25	 29.07	-1	27316..27996	-	226	48477097	-	PTO0025	-	hypothetical protein
26	 34.83	0	28028..28360	-	110	48477098	-	PTO0026	-	hypothetical protein
27	 32.42	-1	30695..31348	-	217	48477099	-	PTO0027	-	hypothetical protein
28	 33.27	0	31996..33567	-	523	48477100	-	PTO0028	-	5-methylcytosine-specific restriction enzyme subunit McrB
29	 28.19	-1	35303..36313	+	336	48477101	-	PTO0029	-	hypothetical protein
30	 35.23	0	36561..37298	+	245	48477102	-	PTO0030	-	hypothetical protein
31	 31.16	-1	37400..37675	-	91	48477103	-	PTO0031	-	hypothetical protein
32	 34.06	0	38056..38469	-	137	48477104	-	PTO0032	-	hypothetical protein
33	 25.49	-2	39232..39843	+	203	48477105	-	PTO0033	-	hypothetical protein
34	 28.90	-1	39836..40624	+	262	48477106	-	PTO0034	-	hypothetical protein
35	 34.46	0	41799..42065	-	88	48477107	-	PTO0035	-	hypothetical protein
36	 31.42	-1	42712..43287	+	191	48477108	-	PTO0036	-	methyltransferase
37	 36.61	0	43447..44025	+	192	48477109	-	PTO0037	-	amino acid permease
38	 35.90	0	43985..44374	+	129	48477110	-	PTO0038	-	amino acid permease
39	 29.08	-1	45270..45833	+	187	48477111	-	PTO0039	-	precorrin-6X reductase
40	 37.27	0	45811..46242	+	143	48477112	-	PTO0040	-	precorrin-8X methylmutase
41	 41.06	0	46642..46887	+	81	48477113	-	PTO0041	-	precorrin-2 C20-methyltransferase
42	 32.99	0	46817..47110	+	97	48477114	-	PTO0042	-	NADH oxidase
43	 40.10	0	47251..48432	-	393	48477115	-	PTO0043	-	altronate hydrolase
44	 34.68	0	48432..48728	-	98	48477116	-	PTO0044	-	altronate hydrolase
45	 25.61	-2	49160..49405	+	81	48477117	-	PTO0045	-	nucleotidyltransferase
46	 30.85	-1	49390..49590	+	66	48477118	-	PTO0046	-	nucleotidyltransferase
47	 29.07	-1	50573..51064	-	163	48477119	-	PTO0047	-	hypothetical protein
48	 26.82	-2	52535..52795	-	86	48477120	-	PTO0048	-	hypothetical protein
49	 29.18	-1	52795..53757	-	320	48477121	-	PTO0049	-	DNA polymerase
50	 26.76	-2	53790..54914	-	374	48477122	-	PTO0050	-	hypothetical protein
51	 30.26	-1	54904..55815	-	303	48477123	-	PTO0051	-	hypothetical protein
52	 34.00	0	55796..56548	-	250	48477124	-	PTO0052	-	hypothetical protein
53	 29.74	-1	56884..59190	-	768	48477125	-	PTO0053	-	HD domain-containing protein
54	 29.18	-1	59180..59902	-	240	48477126	-	PTO0054	-	hypothetical protein
55	 38.12	0	60523..61107	-	194	48477127	-	PTO0055	-	hypothetical protein
56	 26.03	-2	62769..63521	-	250	48477128	-	PTO0056	-	hypothetical protein
57	 29.38	-1	63594..64910	-	438	48477129	-	PTO0057	-	hypothetical protein
58	 28.09	-1	64858..66153	-	431	48477130	-	PTO0058	-	hypothetical protein
59	 31.77	-1	66305..66817	+	170	48477131	-	PTO0059	-	SAM-dependent methyltransferase
60	 29.81	-1	66914..67993	+	359	48477132	-	PTO0060	-	hypothetical protein
61	 35.25	0	68124..68540	-	138	48477133	-	PTO0061	-	hypothetical protein
62	 42.20	+1	68683..69381	-	232	48477134	-	PTO0062	-	hypothetical protein
63	 35.80	0	69483..69968	-	161	48477135	-	PTO0063	-	transcriptional regulatory protein
64	 33.66	0	69983..71200	-	405	48477136	-	PTO0064	-	permease
65	 36.10	0	71191..72417	-	408	48477137	-	PTO0065	-	sugar transporter
66	 39.32	0	72761..72877	-	38	48477138	-	PTO0066	-	hypothetical protein
67	 35.98	0	72934..75051	+	705	48477139	-	PTO0067	-	glycogen branching enzyme
68	 36.45	0	75032..76924	+	630	48477140	-	PTO0068	-	1,4-alpha-glucan branching enzyme
69	 39.95	0	76917..78593	+	558	48477141	-	PTO0069	-	trehalose synthase
70	 28.91	-1	78562..79872	+	436	48477142	-	PTO0070	-	hypothetical protein
71	 30.13	-1	79853..80227	-	124	48477143	-	PTO0071	-	trehalose synthase
72	 41.97	+1	80244..81563	-	439	48477144	-	PTO0072	-	transporter
73	 30.16	-1	81905..83101	-	398	48477145	-	PTO0073	-	transporter
74	 27.78	-2	83180..83521	+	113	48477146	-	PTO0074	-	hypothetical protein
75	 19.73	-2	84568..85236	-	222	48477147	-	PTO0075	-	hypothetical protein
76	 25.31	-2	85223..88213	-	996	48477148	-	PTO0076	-	type I restriction-modification system restriction subunit
77	 31.67	-1	88203..89528	-	441	48477149	-	PTO0077	-	type I restriction-modification system specificity subunit
78	 29.23	-1	89521..91251	-	576	48477150	-	PTO0078	-	type I restriction-modification system methylation subunit
79	 28.76	-1	91625..91930	-	101	48477151	-	PTO0079	-	hypothetical protein
80	 27.07	-2	92225..93118	+	297	48477152	-	PTO0080	-	hypothetical protein
81	 28.37	-1	94088..94732	+	214	48477153	-	PTO0081	-	hypothetical protein
82	 33.33	0	95265..95606	+	113	48477154	-	PTO0082	-	ArsR family transcriptional regulator
83	 32.79	0	95603..96886	+	427	48477155	-	PTO0083	-	arsenical pump membrane protein
84	 34.72	0	96931..98298	+	455	48477156	cysS	PTO0084	-	cysteinyl-tRNA synthetase
85	 37.16	0	98333..99481	+	382	48477157	-	PTO0085	-	cytochrome P450
86	 39.79	0	99523..100839	+	438	48477158	-	PTO0086	-	transporter
87	 35.01	0	101296..102369	-	357	48477159	-	PTO0087	-	glycerol-3-P ABC transporter ATP binding protein
88	 31.85	-1	102375..103184	-	269	48477160	-	PTO0088	-	glycerol-3-P ABC transporter permease protein
89	 31.76	-1	103181..104071	-	296	48477161	-	PTO0089	-	glycerol-3-P ABC transporter permease protein
90	 38.58	0	104077..105657	-	526	48477162	-	PTO0090	-	glycerol-3-P ABC transporter solute binding protein
91	 27.42	-2	105747..108605	+	952	48477163	-	PTO0091	-	alpha-mannosidase
92	 32.56	0	108647..110584	+	645	48477164	-	PTO0092	-	alpha-glucosidase
93	 41.88	+1	110833..112224	+	463	48477165	-	PTO0093	-	phosphate transporter
94	 31.53	-1	112312..112920	+	202	48477166	-	PTO0094	-	hypothetical protein
95	 37.97	0	112936..113883	+	315	48477167	-	PTO0095	-	ABC-type multidrug transport system, ATPase component
96	 36.73	0	113880..114644	+	254	48477168	-	PTO0096	-	ABC-type multidrug transport system, permease component
97	 31.31	-1	114781..115275	+	164	48477169	-	PTO0097	-	hypothetical protein
98	 38.58	0	115333..115770	+	145	48477170	-	PTO0098	-	ATP/GTP binding protein
99	 36.74	0	116032..117615	+	527	48477171	-	PTO0099	-	hypothetical protein
100	 40.49	0	117819..119048	+	409	48477172	-	PTO0100	-	transporter
36.84	MEAN

4.42	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.