IslandPath Analysis: Shewanella oneidensis MR-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.33   STD DEV: 3.81
Shewanella oneidensis MR-1, complete genome - 1..4969803
4318 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.58	0	334..774	-	146	24371601	mioC	SO_0001	-	flavodoxin
2	 44.49	0	954..2504	+	516	24371602	-	SO_0002	-	proton/peptide symporter family protein
3	 48.91	0	2589..3962	-	457	24371603	trmE	SO_0003	-	tRNA modification GTPase TrmE
4	 45.57	0	4058..5683	-	541	24371604	-	SO_0004	-	inner membrane protein, 60 kDa
5	 47.84	0	5687..5941	-	84	24371605	-	SO_0005	-	hypothetical protein
6	 44.82	0	5908..6264	-	118	24371606	rnpA	SO_0006	-	ribonuclease P protein component
7	 54.35	+2	6281..6418	-	45	24371607	rpmH	SO_0007	-	50S ribosomal protein L34
8	 44.61	0	6873..8255	+	460	24371608	dnaA	SO_0008	-	chromosomal replication initiation protein
9	 44.60	0	8276..9376	+	366	24371609	dnaN	SO_0009	-	DNA polymerase III, beta subunit
10	 45.89	0	9539..10621	+	360	24371610	recF	SO_0010	-	DNA replication and repair protein RecF
11	 46.53	0	10638..13055	+	805	24371611	gyrB	SO_0011	-	DNA gyrase, B subunit
12	 46.30	0	13129..13791	-	220	24371612	-	SO_0012	-	glutathione S-transferase family protein
13	 46.07	0	14311..15111	+	266	24371613	-	SO_0013	-	hypothetical protein
14	 48.04	0	15180..17246	-	688	24371614	glyS	SO_0014	-	glycyl-tRNA synthetase subunit beta
15	 49.89	0	17256..18161	-	301	24371615	glyQ	SO_0015	-	glycyl-tRNA synthetase subunit alpha
16	 43.92	0	18279..18854	+	191	24371616	tag	SO_0016	-	DNA-3-methyladenine glycosidase I
17	 46.54	0	18941..22090	-	1049	24371617	-	SO_0017	-	amidohydrolase
18	 48.17	0	22330..22767	-	145	24371618	-	SO_0018	-	hypothetical protein
19	 46.34	0	22815..23060	-	81	24371619	-	SO_0019	-	hypothetical protein
20	 49.66	0	23307..24470	-	387	24371620	fadA	SO_0020	-	3-ketoacyl-CoA thiolase
21	 49.14	0	24493..26643	-	716	24371621	fadB	SO_0021	-	multifunctional fatty acid oxidation complex subunit alpha
22	 46.82	0	27069..28388	+	439	24371622	pepQ	SO_0022	-	proline dipeptidase
23	 46.50	0	28404..29018	+	204	24371623	-	SO_0023	-	hypothetical protein
24	 46.06	0	29096..30556	+	486	24371624	trkH-1	SO_0024	-	potassium uptake protein TrkH
25	 42.10	-1	30558..31082	+	174	24371625	-	SO_0025	-	flavodoxin
26	 41.42	-1	31147..31455	-	102	24371626	-	SO_0026	-	ArsR family transcriptional regulator
27	 43.96	0	31656..32210	+	184	24371627	-	SO_0027	-	protoporphyrinogen oxidase, putative
28	 47.47	0	32252..33694	-	480	24371628	trkH-2	SO_0028	-	potassium uptake protein TrkH
29	 49.50	0	33706..35115	-	469	24371629	trkA	SO_0029	-	potassium transporter peripheral membrane component
30	 49.96	0	35131..36417	-	428	24371630	sun	SO_0030	-	sun protein
31	 51.10	+1	36420..37376	-	318	24371631	fmt	SO_0031	-	methionyl-tRNA formyltransferase
32	 42.80	0	37392..37898	-	168	24371632	def-1	SO_0032	-	polypeptide deformylase
33	 44.94	0	38024..39160	+	378	24371633	-	SO_0033	-	LysM domain-containing protein
34	 48.18	0	39244..40260	+	338	24371634	-	SO_0034	-	DNA processing protein DprA, putative
35	 42.35	-1	40263..40739	+	158	24371635	smg	SO_0035	-	smg protein
36	 45.68	0	40852..41418	+	188	24371636	-	SO_0036	-	topoisomerase DNA-binding C4 zinc finger domain-containing protein
37	 48.50	0	41557..42123	+	188	24371637	-	SO_0037	-	Sua5/YciO/YrdC/YwlC family protein
38	 50.83	+1	42152..43060	+	302	24371638	hemF	SO_0038	-	coproporphyrinogen III oxidase
39	 45.66	0	43090..43527	-	145	24371639	-	SO_0039	-	globin
40	 47.22	0	43717..44580	+	287	24371640	aroE	SO_0040	-	shikimate 5-dehydrogenase
41	 42.75	0	44606..44881	+	91	24371641	-	SO_0041	-	hypothetical protein
42	 46.45	0	44973..45521	-	182	24371642	-	SO_0042	-	carbonic anhydrase
43	 43.59	0	45835..45951	+	38	24371643	-	SO_0043	-	hypothetical protein
44	 47.62	0	51728..51979	+	83	24371644	-	SO_0044	-	hypothetical protein
45	 42.54	0	52004..52459	+	151	24371645	-	SO_0045	-	Rrf2 family protein
46	 48.68	0	52434..53189	-	251	24371646	-	SO_0046	-	hypothetical protein
47	 46.24	0	53199..54407	-	402	24371647	-	SO_0047	-	carboxyl-terminal protease, putative
48	 47.15	0	54456..55490	-	344	24371648	-	SO_0048	-	M24/M37 family peptidase
49	 51.00	+1	55600..57144	-	514	24371649	gpmA	SO_0049	-	phosphoglyceromutase
50	 40.46	-1	57409..57843	+	144	24371650	-	SO_0050	-	rhodanese domain-containing protein
51	 45.16	0	57826..57918	-	30	24371651	-	SO_0051	-	hypothetical protein
52	 46.84	0	58105..58578	+	157	24371652	secB	SO_0052	-	preprotein translocase subunit SecB
53	 51.13	+1	58583..59599	+	338	24371653	gpsA	SO_0053	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
54	 50.80	+1	59949..61139	+	396	24371654	-	SO_0054	-	hypothetical protein
55	 42.26	-1	61362..63041	-	559	24371655	-	SO_0055	-	hypothetical protein
56	 49.80	0	63429..64187	+	252	24371656	-	SO_0056	-	transporter, putative
57	 49.49	0	64299..65660	-	453	24371657	-	SO_0057	-	Trk family potassium uptake protein
58	 48.21	0	65662..66360	-	232	24371658	-	SO_0058	-	potassium uptake protein, putative
59	 49.86	0	66406..67095	-	229	24371659	kdpE	SO_0059	-	transcriptional regulatory protein KdpE
60	 49.57	0	67096..68142	-	348	24371660	-	SO_0060	-	sensor histidine kinase
61	 46.45	0	68407..68871	+	154	24371661	-	SO_0061	-	NLP/P60 family lipoprotein
62	 40.57	-1	69205..69591	+	128	24371662	-	SO_0062	-	hypothetical protein
63	 45.80	0	69588..70895	+	435	24371663	-	SO_0063	-	hypothetical protein
64	 50.00	0	71134..71667	+	177	24371665	mogA	SO_0065	-	molybdenum cofactor biosynthesis protein
65	 48.32	0	72364..78060	+	1898	24371666	-	SO_0066	-	hypothetical protein
66	 50.50	+1	78057..80339	+	760	24371667	-	SO_0067	-	penicillin-binding protein 1C, putative
67	 39.02	-1	80364..80609	-	81	24371668	-	SO_0068	-	hypothetical protein
68	 49.91	0	80667..81806	-	379	24371669	-	SO_0069	-	transport protein, putative
69	 54.15	+2	81904..82638	-	244	24371670	natA	SO_0070	-	ATP-binding transport protein NatA
70	 51.91	+1	82641..84260	-	539	24371671	-	SO_0071	-	alpha/beta fold family hydrolase
71	 54.30	+2	84353..84724	+	123	24371672	-	SO_0072	-	GntR family transcriptional regulator
72	 50.81	+1	84765..85628	+	287	24371673	-	SO_0073	-	ABC transporter, ATP-binding protein
73	 49.62	0	85625..86932	+	435	24371674	-	SO_0074	-	hypothetical protein
74	 49.68	0	87148..88854	+	568	24371675	-	SO_0075	-	AMP-binding family protein
75	 46.92	0	88995..91481	+	828	24371676	-	SO_0076	-	hypothetical protein
76	 45.80	0	91601..92017	+	138	24371677	-	SO_0077	-	4-hydroxybenzoyl-CoA thioesterase
77	 45.15	0	92009..92812	-	267	24371678	-	SO_0078	-	hypothetical protein
78	 43.45	0	92857..93123	-	88	24371679	-	SO_0079	-	hypothetical protein
79	 46.15	0	93185..93613	-	142	24371680	-	SO_0080	-	4-hydroxybenzoyl-CoA thioesterase
80	 48.18	0	93827..94156	+	109	24371681	-	SO_0081	-	hypothetical protein
81	 47.34	0	94160..94516	+	118	24371682	-	SO_0082	-	MerR family transcriptional regulator
82	 46.77	0	94704..95090	+	128	24371683	-	SO_0083	-	carboxymuconolactone decarboxylase family protein
83	 46.84	0	95148..95828	-	226	24371684	-	SO_0084	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
84	 46.81	0	96204..96626	+	140	24371685	-	SO_0085	-	hypothetical protein
85	 41.18	-1	96994..97095	+	33	24371686	-	SO_0086	-	hypothetical protein
86	 48.66	0	97161..97721	+	186	24371687	-	SO_0087	-	hypothetical protein
87	 42.50	-1	97916..98515	-	199	24371688	-	SO_0088	-	hypothetical protein
88	 47.37	0	98370..98540	+	56	24371689	-	SO_0089	-	hypothetical protein
89	 43.83	0	98787..99329	+	180	24371690	-	SO_0090	-	hypothetical protein
90	 32.16	-2	99494..100090	-	198	24371691	-	SO_0091	-	hypothetical protein
91	 39.10	-1	100249..100959	-	236	24371692	deoD-1	SO_0092	-	purine nucleoside phosphorylase
92	 39.48	-1	100974..102194	-	406	24371693	-	SO_0093	-	NupC family protein
93	 42.03	-1	102352..102489	+	45	24371694	-	SO_0094	-	hypothetical protein
94	 50.77	+1	102534..103760	-	408	24371695	hutI	SO_0095	-	imidazolonepropionase
95	 53.95	+2	103967..104674	+	235	24371696	hutC	SO_0096	-	histidine utilization repressor
96	 54.10	+2	104801..106471	+	556	24371697	hutU	SO_0097	-	urocanate hydratase
97	 52.79	+1	106536..108077	+	513	24371698	hutH	SO_0098	-	histidine ammonia-lyase
98	 49.49	0	108703..111717	+	1004	24371701	fdnG	SO_0101	-	selenium-containing formate dehydrogenase, nitrate inducible, alpha subunit
99	 52.79	+1	111720..112634	+	304	24371702	fdnH	SO_0102	-	formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
100	 48.91	0	112631..113272	+	213	24371703	fdnI	SO_0103	-	formate dehydrogenase, nitrate-inducible, cytochrome b556 subunit
46.33	MEAN

3.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.