IslandPath Analysis: Rhodopseudomonas palustris TIE-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.08   STD DEV: 3.42
Rhodopseudomonas palustris TIE-1, complete genome - 1..5744041
5246 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.47	0	220..1638	+	472	192288434	-	Rpal_0001	-	chromosomal replication initiator protein DnaA
2	 64.88	0	1872..2990	+	372	192288435	-	Rpal_0002	-	DNA polymerase III, beta subunit
3	 69.91	+1	3234..4373	+	379	192288436	-	Rpal_0003	-	DNA replication and repair protein RecF
4	 64.86	0	4590..7031	+	813	192288437	-	Rpal_0004	-	DNA gyrase, B subunit
5	 62.73	0	7213..8331	-	372	192288438	-	Rpal_0005	-	4-hydroxyphenylpyruvate dioxygenase
6	 63.75	0	8457..8936	+	159	192288439	-	Rpal_0006	-	transcriptional regulator, AsnC family
7	 67.56	0	8982..10430	-	482	192288440	-	Rpal_0007	-	signal transduction histidine kinase
8	 61.40	-1	10430..10714	-	94	192288441	-	Rpal_0008	-	KaiB domain protein
9	 63.42	0	10724..12415	-	563	192288442	-	Rpal_0009	-	putative circadian clock protein, KaiC
10	 61.96	0	12809..13318	-	169	192288443	-	Rpal_0010	-	transcriptional regulator, AsnC family
11	 64.29	0	13458..13667	-	69	192288444	-	Rpal_0011	-	hypothetical protein
12	 71.49	+1	13806..14054	-	82	192288445	-	Rpal_0012	-	hypothetical protein
13	 65.54	0	14056..14232	-	58	192288446	-	Rpal_0013	-	cytochrome oxidase maturation protein, cbb3-type
14	 67.44	0	14232..16430	-	732	192288447	-	Rpal_0014	-	copper-translocating P-type ATPase
15	 65.47	0	16465..16965	-	166	192288448	-	Rpal_0015	-	FixH family protein
16	 62.76	0	16985..18442	-	485	192288449	-	Rpal_0016	-	cytochrome c oxidase accessory protein CcoG
17	 63.61	0	18559..19440	-	293	192288450	-	Rpal_0017	-	cytochrome c oxidase, cbb3-type, subunit III
18	 56.97	-2	19448..19612	-	54	192288451	-	Rpal_0018	-	Cbb3-type cytochrome oxidase component
19	 61.77	0	19622..20356	-	244	192288452	-	Rpal_0019	-	cytochrome c oxidase, cbb3-type, subunit II
20	 61.99	0	20369..22015	-	548	192288453	-	Rpal_0020	-	cytochrome c oxidase, cbb3-type, subunit I
21	 66.45	0	22326..23246	-	306	192288454	-	Rpal_0021	-	2-dehydropantoate 2-reductase
22	 65.45	0	23320..24057	-	245	192288455	-	Rpal_0022	-	short-chain dehydrogenase/reductase SDR
23	 61.53	-1	24176..24778	-	200	192288456	-	Rpal_0023	-	DSBA oxidoreductase
24	 65.32	0	24994..25662	+	222	192288457	-	Rpal_0024	-	Glutathione S-transferase domain
25	 65.53	0	25778..26653	-	291	192288458	-	Rpal_0025	-	short-chain dehydrogenase/reductase SDR
26	 67.07	0	26926..28659	-	577	192288459	-	Rpal_0026	-	gamma-glutamyltransferase
27	 65.81	0	28765..30162	+	465	192288460	-	Rpal_0027	-	major facilitator superfamily MFS_1
28	 65.84	0	30377..31471	+	364	192288461	-	Rpal_0028	-	phospho-2-dehydro-3-deoxyheptonate aldolase
29	 66.35	0	31529..33121	-	530	192288462	-	Rpal_0029	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
30	 68.60	+1	33307..35061	-	584	192288463	-	Rpal_0030	-	Heparinase II/III family protein
31	 69.11	+1	35360..36712	-	450	192288464	-	Rpal_0031	-	Fmu (Sun) domain protein
32	 66.67	0	36865..37083	+	72	192288465	-	Rpal_0032	-	protein of unknown function DUF1674
33	 69.62	+1	37169..37744	+	191	192288466	-	Rpal_0033	-	nuclease (SNase domain protein)
34	 64.52	0	37748..38632	-	294	192288467	-	Rpal_0034	-	hypothetical protein
35	 70.58	+1	38980..40437	+	485	192288468	-	Rpal_0035	-	amine oxidase
36	 67.12	0	40444..42855	-	803	192288469	-	Rpal_0036	-	phenylalanyl-tRNA synthetase, beta subunit
37	 65.62	0	43000..43479	-	159	192288470	-	Rpal_0037	-	protein of unknown function DUF559
38	 65.00	0	43710..44792	-	360	192288471	-	Rpal_0038	-	phenylalanyl-tRNA synthetase, alpha subunit
39	 63.06	0	44936..45295	-	119	192288472	-	Rpal_0039	-	ribosomal protein L20
40	 57.21	-2	45379..45579	-	66	192288473	-	Rpal_0040	-	ribosomal protein L35
41	 57.34	-2	45913..46491	-	192	192288474	-	Rpal_0041	-	translation initiation factor IF-3
42	 68.83	+1	46773..47558	+	261	192288475	-	Rpal_0042	-	conserved hypothetical protein, putative alpha/beta hydrolase superfamily
43	 68.10	0	47716..48828	-	370	192288476	-	Rpal_0043	-	domain of unknown function DUF1730
44	 65.66	0	48873..49565	-	230	192288477	-	Rpal_0044	-	Glutathione S-transferase domain
45	 61.09	-1	49765..50571	+	268	192288478	-	Rpal_0045	-	undecaprenol kinase
46	 67.70	0	50621..51586	-	321	192288479	-	Rpal_0046	-	NADH dehydrogenase (ubiquinone)
47	 64.55	0	52000..52614	+	204	192288480	-	Rpal_0047	-	3'-5' exonuclease
48	 65.86	0	52844..53584	+	246	192288481	-	Rpal_0048	-	protein of unknown function DUF1239
49	 66.37	0	53593..54258	+	221	192288482	-	Rpal_0049	-	OstA family protein
50	 66.14	0	54394..55344	+	316	192288483	-	Rpal_0050	-	ABC transporter related
51	 58.16	-2	55375..55515	+	46	192288484	-	Rpal_0051	-	hypothetical protein
52	 63.87	0	55551..57197	+	548	192288485	-	Rpal_0052	-	RNA polymerase, sigma 54 subunit, RpoN
53	 63.70	0	57255..57860	+	201	192288486	-	Rpal_0053	-	sigma 54 modulation protein/ribosomal protein S30EA
54	 67.75	0	58136..58597	+	153	192288487	-	Rpal_0054	-	PTS IIA-like nitrogen-regulatory protein PtsN
55	 63.30	0	59203..59469	-	88	192288488	-	Rpal_0055	-	protein of unknown function DUF1150
56	 57.98	-2	59520..59945	-	141	192288489	-	Rpal_0056	-	heat shock protein Hsp20
57	 65.93	0	60099..61190	-	363	192288490	-	Rpal_0057	-	ABC transporter related
58	 61.37	-1	61193..62041	-	282	192288491	-	Rpal_0058	-	binding-protein-dependent transport systems inner membrane component
59	 61.11	-1	62041..62922	-	293	192288492	-	Rpal_0059	-	binding-protein-dependent transport systems inner membrane component
60	 62.98	0	63087..64415	-	442	192288493	-	Rpal_0060	-	extracellular solute-binding protein family 1
61	 64.84	0	64647..65852	-	401	192288494	-	Rpal_0061	-	L-carnitine dehydratase/bile acid-inducible protein F
62	 51.48	-2	65898..66134	-	78	192288495	-	Rpal_0062	-	Excinuclease ABC C subunit domain protein
63	 59.95	-1	66681..67082	-	133	192288496	-	Rpal_0063	-	hypothetical protein
64	 67.56	0	67223..68560	+	445	192288497	-	Rpal_0064	-	3-phosphoshikimate 1-carboxyvinyltransferase
65	 65.33	0	68564..69238	-	224	192288498	-	Rpal_0065	-	protein of unknown function DUF374
66	 67.14	0	69403..70041	+	212	192288499	-	Rpal_0066	-	cytidylate kinase
67	 62.78	0	70342..72039	+	565	192288500	-	Rpal_0067	-	ribosomal protein S1
68	 66.06	0	72268..73248	+	326	192288501	-	Rpal_0068	-	signal peptide peptidase SppA, 36K type
69	 61.27	-1	73414..73728	+	104	192288502	-	Rpal_0069	-	integration host factor, beta subunit
70	 68.22	0	73766..74152	+	128	192288503	-	Rpal_0070	-	hypothetical protein
71	 67.60	0	74211..74852	+	213	192288504	-	Rpal_0071	-	Phosphoribosylanthranilate isomerase
72	 65.60	0	74866..76080	+	404	192288505	-	Rpal_0072	-	tryptophan synthase, beta subunit
73	 68.10	0	76080..76916	+	278	192288506	-	Rpal_0073	-	tryptophan synthase, alpha subunit
74	 67.17	0	77026..78009	+	327	192288507	-	Rpal_0074	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
75	 69.98	+1	78006..79334	+	442	192288508	-	Rpal_0075	-	FolC bifunctional protein
76	 63.24	0	79508..79828	-	106	192288509	-	Rpal_0076	-	thioredoxin
77	 67.93	0	79925..83410	-	1161	192288510	-	Rpal_0077	-	double-strand break repair helicase AddA
78	 68.79	+1	83407..86556	-	1049	192288511	-	Rpal_0078	-	double-strand break repair protein AddB
79	 67.08	0	86632..87354	-	240	192288512	-	Rpal_0079	-	Nucleotidyl transferase
80	 62.46	0	87512..87820	-	102	192288513	-	Rpal_0080	-	hypothetical protein
81	 68.11	0	87924..89444	-	506	192288514	-	Rpal_0081	-	protein of unknown function UPF0079
82	 66.27	0	89441..91954	-	837	192288515	-	Rpal_0082	-	PAS/PAC sensor signal transduction histidine kinase
83	 69.06	+1	92174..92632	-	152	192288516	-	Rpal_0083	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
84	 69.23	+1	92629..94074	-	481	192288517	-	Rpal_0084	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase
85	 67.11	0	94128..95705	-	525	192288518	-	Rpal_0085	-	2-polyprenylphenol 6-hydroxylase
86	 62.34	0	95702..96463	-	253	192288519	-	Rpal_0086	-	ubiquinone/menaquinone biosynthesis methyltransferase
87	 67.58	0	96707..97582	+	291	192288520	-	Rpal_0087	-	formamidopyrimidine-DNA glycosylase
88	 68.23	0	97634..98980	-	448	192288521	-	Rpal_0088	-	Peptidoglycan-binding domain 1 protein
89	 68.79	+1	99189..99989	+	266	192288522	-	Rpal_0089	-	UBA/THIF-type NAD/FAD binding protein
90	 68.98	+1	100114..101802	+	562	192288523	-	Rpal_0090	-	protein of unknown function DUF894 DitE
91	 60.61	-1	101783..101881	-	32	192288524	-	Rpal_0091	-	hypothetical protein
92	 63.47	0	101934..102152	-	72	192288525	-	Rpal_0092	-	conserved hypothetical protein; putative signal peptide
93	 59.36	-1	102281..102622	-	113	192288526	-	Rpal_0093	-	hypothetical protein
94	 64.44	0	102861..103265	-	134	192288527	-	Rpal_0094	-	hypothetical protein
95	 66.37	0	103344..103685	-	113	192288528	-	Rpal_0095	-	hypothetical protein
96	 60.14	-1	104226..104501	-	91	192288529	-	Rpal_0096	-	hypothetical protein
97	 64.97	0	104632..105279	+	215	192288530	-	Rpal_0097	-	transcriptional regulator, TetR family
98	 68.41	0	105276..106193	+	305	192288531	-	Rpal_0098	-	PepSY-associated TM helix domain protein
99	 69.36	+1	106242..107468	+	408	192288532	-	Rpal_0099	-	efflux transporter, RND family, MFP subunit
100	 66.25	0	107472..110621	+	1049	192288533	-	Rpal_0100	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
65.08	MEAN

3.42	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.