IslandPath Analysis: Burkholderia phytofirmans PsJN



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.82   STD DEV: 3.61
Burkholderia phytofirmans PsJN chromosome 1, complete sequence - 1..4467537
3922 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.70	0	299..1936	+	545	187922036	-	Bphyt_0001	-	chromosomal replication initiator protein DnaA
2	 58.79	-1	2157..3260	+	367	187922037	-	Bphyt_0002	-	DNA polymerase III, beta subunit
3	 57.20	-1	3375..5846	+	823	187922038	-	Bphyt_0003	-	DNA gyrase, B subunit
4	 56.54	-1	5901..6305	+	134	187922039	-	Bphyt_0004	-	PAAR repeat-containing protein
5	 58.66	-1	7686..10244	+	852	187922040	-	Bphyt_0006	-	type VI secretion system Vgr family protein
6	 59.33	0	10252..11259	+	335	187922041	-	Bphyt_0007	-	hypothetical protein
7	 55.50	-2	11305..14187	+	960	187922042	-	Bphyt_0008	-	hypothetical protein
8	 52.91	-2	14184..14939	+	251	187922043	-	Bphyt_0009	-	hypothetical protein
9	 55.10	-2	14958..15692	+	244	187922044	-	Bphyt_0010	-	hypothetical protein
10	 53.97	-2	15765..16016	+	83	187922045	-	Bphyt_0011	-	PAAR repeat-containing protein
11	 56.48	-1	16121..18958	+	945	187922046	-	Bphyt_0012	-	hypothetical protein
12	 53.12	-2	18955..19692	+	245	187922047	-	Bphyt_0013	-	hypothetical protein
13	 56.91	-1	19944..21122	-	392	187922048	-	Bphyt_0014	-	conserved hypothetical cytosolic protein
14	 58.67	-1	21119..24493	-	1124	187922049	-	Bphyt_0015	-	conserved hypothetical cytosolic protein
15	 57.25	-1	24486..25133	-	215	187922050	-	Bphyt_0016	-	hypothetical protein
16	 57.94	-1	25136..26590	-	484	187922051	-	Bphyt_0017	-	hypothetical protein
17	 62.32	0	26795..28150	-	451	187922052	-	Bphyt_0018	-	RNA-directed DNA polymerase (Reverse transcriptase)
18	 57.04	-1	28838..29782	-	314	187922053	-	Bphyt_0019	-	transcriptional regulator, AraC family
19	 61.11	0	29985..31388	+	467	187922054	-	Bphyt_0020	-	ethanolamine transproter
20	 60.65	0	31432..32826	+	464	187922055	-	Bphyt_0021	-	Ethanolamine ammonia lyase large subunit
21	 61.40	0	32823..33620	+	265	187922056	-	Bphyt_0022	-	Ethanolamine ammonia-lyase
22	 58.59	-1	33626..34021	-	131	187922057	-	Bphyt_0023	-	protein of unknown function DUF779
23	 59.76	0	34086..35606	-	506	187922058	-	Bphyt_0024	-	Aldehyde Dehydrogenase
24	 63.71	0	35941..36990	+	349	187922059	-	Bphyt_0025	-	transcriptional regulator, AraC family
25	 66.19	0	37034..39139	-	701	187922060	-	Bphyt_0026	-	heavy metal translocating P-type ATPase
26	 65.69	0	39233..39436	+	67	187922061	-	Bphyt_0027	-	hypothetical protein
27	 60.19	0	39486..39917	+	143	187922062	-	Bphyt_0028	-	transcriptional regulator, MerR family
28	 61.69	0	40032..40232	+	66	187922063	-	Bphyt_0029	-	hypothetical protein
29	 64.10	0	40276..41679	+	467	187922064	-	Bphyt_0030	-	DEAD/DEAH box helicase domain protein
30	 61.04	0	41982..43136	+	384	187922065	-	Bphyt_0031	-	aminotransferase class I and II
31	 62.36	0	43261..44049	+	262	187922066	-	Bphyt_0032	-	extracellular solute-binding protein family 3
32	 60.17	0	44181..45026	+	281	187922067	-	Bphyt_0033	-	transcriptional regulator, AraC family
33	 62.59	0	45049..45636	-	195	187922068	-	Bphyt_0034	-	Lysine exporter protein (LYSE/YGGA)
34	 58.00	-1	48397..48915	-	172	187922069	-	Bphyt_0037	-	hypothetical protein
35	 65.85	0	48923..50146	-	407	187922070	-	Bphyt_0038	-	major facilitator superfamily MFS_1
36	 61.89	0	50143..51210	-	355	187922071	-	Bphyt_0039	-	conserved hypothetical signal peptide protein
37	 62.17	0	51437..52348	+	303	187922072	-	Bphyt_0040	-	transcriptional regulator, LysR family
38	 61.23	0	53101..54552	+	483	187922073	-	Bphyt_0041	-	Amidase
39	 55.73	-1	54738..55496	+	252	187922074	-	Bphyt_0042	-	transcriptional regulator, DeoR family
40	 61.48	0	55474..56766	+	430	187922075	-	Bphyt_0043	-	amidase, hydantoinase/carbamoylase family
41	 60.15	0	56777..57727	+	316	187922076	-	Bphyt_0044	-	aminoglycoside phosphotransferase
42	 55.31	-2	57733..58674	+	313	187922077	-	Bphyt_0045	-	Choline/ethanolamine kinase
43	 53.10	-2	58832..59089	+	85	187922078	-	Bphyt_0046	-	hypothetical protein
44	 58.02	-1	59086..60612	+	508	187922079	-	Bphyt_0047	-	Na+/solute symporter
45	 59.48	0	60797..62173	+	458	187922080	-	Bphyt_0048	-	aminotransferase class-III
46	 60.45	0	62769..63911	+	380	187922081	-	Bphyt_0049	-	putative amidase expression-regulating protein
47	 60.36	0	63908..64510	+	200	187922082	-	Bphyt_0050	-	response regulator receiver and ANTAR domain protein
48	 66.43	0	64702..65532	+	276	187922083	-	Bphyt_0051	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
49	 62.29	0	65601..66764	+	387	187922084	-	Bphyt_0052	-	Extracellular ligand-binding receptor
50	 63.68	0	66845..67681	+	278	187922085	-	Bphyt_0053	-	inner-membrane translocator
51	 63.14	0	67674..69488	+	604	187922086	-	Bphyt_0054	-	ABC transporter related
52	 63.82	0	69485..70186	+	233	187922087	-	Bphyt_0055	-	ABC transporter related
53	 65.94	0	70224..70910	+	228	187922088	-	Bphyt_0056	-	urease, beta subunit
54	 66.03	0	70913..72628	+	571	187922089	-	Bphyt_0057	-	urease, alpha subunit
55	 64.72	0	72638..73252	+	204	187922090	-	Bphyt_0058	-	urease accessory protein UreG
56	 66.18	0	73249..74064	+	271	187922091	-	Bphyt_0059	-	Urease accessory protein UreD
57	 66.67	+1	74073..74594	+	173	187922092	-	Bphyt_0060	-	UreE urease accessory domain protein
58	 71.81	+2	74587..75306	+	239	187922093	-	Bphyt_0061	-	Urease accessory protein UreF
59	 66.79	+1	75327..76892	+	521	187922094	-	Bphyt_0062	-	extracellular solute-binding protein family 5
60	 57.75	-1	77409..78440	-	343	187922095	-	Bphyt_0063	-	transcriptional regulator, LacI family
61	 60.47	0	79164..79841	+	225	187922096	-	Bphyt_0064	-	protein of unknown function DUF1028
62	 56.83	-1	79951..81129	+	392	187922097	-	Bphyt_0065	-	Extracellular ligand-binding receptor
63	 55.69	-1	81567..82532	-	321	187922098	-	Bphyt_0066	-	hypothetical protein
64	 56.28	-1	83504..84052	+	182	187922099	-	Bphyt_0067	-	4-vinyl reductase 4VR
65	 53.15	-2	84101..85099	+	332	187922100	-	Bphyt_0068	-	peptidase M19 renal dipeptidase
66	 57.27	-1	85116..85775	-	219	187922101	-	Bphyt_0069	-	transcriptional regulator, TetR family
67	 55.48	-2	85909..87195	+	428	187922102	-	Bphyt_0070	-	major facilitator superfamily MFS_1
68	 59.10	-1	87469..88155	+	228	187922103	-	Bphyt_0071	-	hypothetical protein
69	 56.48	-1	89774..90931	+	385	187922104	-	Bphyt_0072	-	porin Gram-negative type
70	 63.93	0	91180..92604	+	474	187922105	-	Bphyt_0073	-	amine oxidase
71	 58.62	-1	92781..93749	+	322	187922106	-	Bphyt_0074	-	protein of unknown function DUF534
72	 62.90	0	93734..94582	+	282	187922107	-	Bphyt_0075	-	ABC transporter related
73	 61.67	0	94579..95499	+	306	187922108	-	Bphyt_0076	-	inner-membrane translocator
74	 64.31	0	95634..96227	-	197	187922109	-	Bphyt_0077	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
75	 63.10	0	96224..97567	-	447	187922110	-	Bphyt_0078	-	UbiD family decarboxylase
76	 61.21	0	97764..98918	+	384	187922111	-	Bphyt_0079	-	transcriptional regulator, AraC family
77	 62.89	0	99091..100518	+	475	187922112	-	Bphyt_0080	-	Aldehyde Dehydrogenase
78	 53.12	-2	101029..101316	-	95	187922113	-	Bphyt_0081	-	hypothetical protein
79	 63.56	0	101715..102809	-	364	187922114	-	Bphyt_0082	-	transcriptional regulator, LacI family
80	 62.09	0	102962..104251	+	429	187922115	-	Bphyt_0083	-	extracellular solute-binding protein family 1
81	 62.00	0	105093..106013	-	306	187922116	-	Bphyt_0086	-	transcriptional regulator, LysR family
82	 62.43	0	106307..106684	+	125	187922117	-	Bphyt_0087	-	protein of unknown function DUF336
83	 65.37	0	106681..107841	+	386	187922118	-	Bphyt_0088	-	putative major royal jelly-like protein
84	 63.42	0	107899..109131	+	410	187922119	-	Bphyt_0089	-	major facilitator superfamily MFS_1
85	 61.54	0	109893..110165	+	90	187922120	-	Bphyt_0093	-	prevent-host-death family protein
86	 58.21	-1	110165..110578	+	137	187922121	-	Bphyt_0094	-	protein of unknown function DUF132
87	 60.19	0	111634..111849	-	71	187922122	-	Bphyt_0097	-	hypothetical protein
88	 66.43	+1	111851..112708	-	285	187922123	-	Bphyt_0098	-	AAA ATPase
89	 67.57	+1	112705..114141	-	478	187922124	-	Bphyt_0099	-	Integrase catalytic region
90	 67.36	+1	114240..114818	-	192	187922125	-	Bphyt_0100	-	hypothetical protein
91	 67.34	+1	115306..117990	-	894	187922126	-	Bphyt_0102	-	excinuclease ABC, A subunit
92	 63.56	0	118048..119367	-	439	187922127	-	Bphyt_0103	-	AAA ATPase central domain protein
93	 61.89	0	119410..120729	-	439	187922128	-	Bphyt_0104	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
94	 61.13	0	120748..121578	-	276	187922129	-	Bphyt_0105	-	S-formylglutathione hydrolase
95	 61.52	0	121647..122987	-	446	187922130	-	Bphyt_0106	-	hypothetical protein
96	 64.41	0	123172..123570	-	132	187922131	-	Bphyt_0107	-	Glyoxalase/bleomycin resistance protein/dioxygenase
97	 61.62	0	123622..124731	-	369	187922132	-	Bphyt_0108	-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
98	 56.52	-1	124786..125061	-	91	187922133	-	Bphyt_0109	-	protein of unknown function DUF156
99	 58.85	-1	125255..126853	-	532	187922134	-	Bphyt_0110	-	glutamate/cysteine ligase
100	 56.63	-1	127223..128437	-	404	187922135	-	Bphyt_0111	-	Alcohol dehydrogenase GroES domain protein
62.82	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.