IslandPath Analysis: Bifidobacterium adolescentis ATCC 15703



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.51   STD DEV: 4.77
Bifidobacterium adolescentis ATCC 15703, complete genome - 1..2089645
1631 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.00	0	1..1500	+	499	119025019	dnaA	BAD_0001	-	chromosomal replication initiator protein DnaA
2	 61.78	0	1997..3121	+	374	119025020	dnaN	BAD_0002	-	DNA polymerase III subunit beta
3	 61.88	0	3200..4411	+	403	119025021	recF	BAD_0003	-	recombination protein RecF
4	 62.14	0	4411..4896	+	161	119025022	-	BAD_0004	-	hypothetical protein
5	 62.41	0	5177..7315	+	712	119025023	gyrB	BAD_0005	-	DNA gyrase subunit B
6	 63.06	0	7411..10071	+	886	119025024	gyrA	BAD_0006	-	DNA gyrase subunit A
7	 64.06	0	10146..10682	+	178	119025025	-	BAD_0007	-	hypothetical protein
8	 64.07	0	10915..12261	-	448	119025026	gdhA	BAD_0008	-	glutamate dehydrogenase
9	 56.76	0	12452..12895	+	147	119025027	mscL	BAD_0009	-	large-conductance mechanosensitive channel
10	 59.13	0	13528..14124	+	198	119025028	-	BAD_0010	-	metal-dependent hydrolase
11	 61.33	0	14138..15487	-	449	119025029	-	BAD_0011	-	hemolysin-like protein
12	 60.06	0	15555..16250	-	231	119025030	icfA	BAD_0012	-	carbonic anhydrase
13	 43.19	-2	16714..17352	-	212	119025031	ribAB	BAD_0013	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
14	 42.79	-2	17422..17823	-	133	119025032	pra	BAD_0014	-	PE family protein (fragment)
15	 43.97	-2	18079..18501	-	140	119025033	rps8E	BAD_0015	-	SSU ribosomal protein S8P
16	 45.70	-2	19708..20613	-	301	119025034	-	BAD_0016	-	hypothetical protein
17	 47.52	-2	20714..21538	-	274	119025035	-	BAD_0017	-	phage-associated protein
18	 44.76	-2	21535..21954	-	139	119025036	-	BAD_0018	-	hypothetical protein
19	 47.59	-2	22263..23174	-	303	119025037	-	BAD_0019	-	hypothetical protein
20	 54.53	-1	24357..26753	+	798	119025038	ybfG	BAD_0020	-	hypothetical protein
21	 60.85	0	26853..27488	-	211	119025039	-	BAD_0021	-	hypothetical protein
22	 54.80	0	27518..28351	+	277	119025040	-	BAD_0022	-	hypothetical protein
23	 49.37	-2	28422..29057	-	211	119025041	-	BAD_0023	-	hypothetical protein
24	 63.22	0	29202..31958	-	918	119025042	-	BAD_0024	-	hypothetical protein
25	 61.59	0	32160..33992	+	610	119025043	-	BAD_0025	-	hypothetical protein
26	 63.35	0	34050..35645	+	531	119025044	opuE	BAD_0026	-	sodium_proline symporter
27	 61.22	0	35784..36884	-	366	119025045	trpS	BAD_0027	-	tryptophanyl-tRNA synthetase
28	 61.02	0	37011..37382	+	123	119025046	-	BAD_0028	-	hypothetical protein
29	 65.75	+1	37518..37955	-	145	119025047	-	BAD_0029	-	hypothetical protein
30	 61.54	0	38284..40740	+	818	119025048	glgP	BAD_0030	-	glycogen phosphorylase
31	 59.26	0	40845..41195	+	116	119025049	pbp1A	BAD_0031	-	membrane carboxypeptidase
32	 57.36	0	41217..42377	+	386	119025050	-	BAD_0032	-	hypothetical protein
33	 63.37	0	42641..43915	+	424	119025051	-	BAD_0033	-	N6-adenine-specific methylase
34	 57.69	0	44105..44572	-	155	119025052	-	BAD_0034	-	putative septation inhibitor protein
35	 59.74	0	44708..45487	+	259	119025053	-	BAD_0035	-	hypothetical protein
36	 61.19	0	45494..46588	+	364	119025054	-	BAD_0036	-	hypothetical protein
37	 61.88	0	46667..47314	+	215	119025055	pabA	BAD_0037	-	Para-aminobenzoate synthase glutamine amidotransferase component II
38	 61.43	0	47433..49493	-	686	119025056	pknB	BAD_0038	-	serine-threonine protein kinase
39	 60.00	0	49490..50434	-	314	119025057	pknA	BAD_0039	-	serine-threonine protein kinase
40	 61.42	0	50431..51897	-	488	119025058	pbpA	BAD_0040	-	penicillin binding protein transpeptidase
41	 59.91	0	51890..53473	-	527	119025059	rodA	BAD_0041	-	protein involved in cell wall formation and stabilization of the FtsZ ring during cell division
42	 62.85	0	53470..55092	-	540	119025060	-	BAD_0042	-	phosphoprotein phosphatase
43	 61.05	0	55089..55604	-	171	119025061	-	BAD_0043	-	hypothetical protein
44	 59.04	0	55633..56340	-	235	119025062	-	BAD_0044	-	hypothetical protein
45	 65.03	+1	56490..59000	+	836	119025063	-	BAD_0045	-	dipeptidyl peptidase IV
46	 61.94	0	59226..60515	-	429	119025064	-	BAD_0046	-	hypothetical protein
47	 60.06	0	60505..61170	-	221	119025065	-	BAD_0047	-	response regulator of two-component system
48	 60.85	0	61460..62524	+	354	119025066	-	BAD_0048	-	hypothetical protein
49	 62.46	0	62598..63500	+	300	119025067	-	BAD_0049	-	putative permease
50	 59.05	0	63623..64252	+	209	119025068	-	BAD_0050	-	hydroxyacylglutathione hydrolase
51	 47.80	-2	64283..64600	+	105	119025069	-	BAD_0051	-	transport system permease protein
52	 48.93	-2	65182..65508	-	108	119025070	-	BAD_0052	-	hypothetical protein
53	 50.21	-1	65538..66023	-	161	119025071	ygaT	BAD_0053	-	hypothetical protein
54	 49.79	-2	66140..67573	+	477	119025072	recD	BAD_0054	-	putative exodeoxyribonuclease V
55	 48.63	-2	67644..68375	+	243	119025073	-	BAD_0055	-	response regulator of two-component system
56	 63.72	0	68587..70047	-	486	119025074	tgt	BAD_0056	-	queuine tRNA-ribosyltransferase
57	 64.75	+1	70216..72141	+	641	119025075	degP	BAD_0057	-	DO serine protease
58	 64.16	0	72497..74806	+	769	119025076	-	BAD_0058	-	cation-transporting ATPase V
59	 64.33	+1	74857..75927	-	356	119025077	-	BAD_0059	-	L-asparaginase I
60	 61.23	0	76153..77937	+	594	119025078	-	BAD_0060	-	hypothetical protein
61	 62.97	0	78010..79470	+	486	119025079	fprA	BAD_0061	-	ferredoxin/ferredoxin-NADP reductase
62	 60.83	0	79703..80833	+	376	119025080	htpX	BAD_0062	-	protease HtpX-like protein
63	 59.98	0	81673..82659	+	328	119025081	-	BAD_0063	-	hypothetical protein
64	 60.09	0	82999..85323	-	774	119025082	pip	BAD_0064	-	hypothetical protein
65	 59.92	0	85326..88037	-	903	119025083	-	BAD_0065	-	hypothetical protein
66	 62.27	0	88346..89413	+	355	119025084	fba	BAD_0066	-	fructose-bisphosphate aldolase
67	 63.87	0	89599..90885	+	428	119025085	purA	BAD_0067	-	adenylosuccinate synthetase
68	 63.83	0	90933..92660	+	575	119025086	-	BAD_0068	-	voltage gated channel protein
69	 66.14	+1	92801..93943	+	380	119025087	crcB2	BAD_0069	-	protein crcB homolog 2
70	 62.18	0	94436..95905	+	489	119025088	-	BAD_0070	-	branched-chain amino acid ABC-type transport system permease components
71	 62.50	0	95909..96892	+	327	119025089	-	BAD_0071	-	branched-chain amino acid transport system permease protein
72	 61.83	0	96966..97916	+	316	119025090	-	BAD_0072	-	branched-chain amino acid transport system ATP-binding protein
73	 61.60	0	97918..98727	+	269	119025091	LivF	BAD_0073	-	ABC-type branched-chain amino acid transport systems ATPase component
74	 60.98	0	99086..100387	+	433	119025092	LivF	BAD_0074	-	branched-chain amino acid transport system substrate-binding protein
75	 62.34	0	100769..101854	+	361	119025093	-	BAD_0075	-	LacI-type transcriptional regulator
76	 62.26	0	101915..102868	-	317	119025094	pabC	BAD_0076	-	4-amino-4-deoxychorismate lyase
77	 62.91	0	103080..103985	+	301	119025095	-	BAD_0077	-	hypothetical protein
78	 62.24	0	104792..106306	+	504	119025096	spl	BAD_0078	-	sucrose phosphorylase
79	 62.59	0	106598..108190	+	530	119025097	-	BAD_0079	-	hypothetical protein
80	 62.81	0	108669..110018	+	449	119025098	shiA	BAD_0080	-	transmembrane transport protein
81	 62.87	0	110304..111356	+	350	162229912	ilvC2	BAD_0081	-	ketol-acid reductoisomerase
82	 62.15	0	111553..112593	-	346	119025100	ilvC1	BAD_0082	-	ketol-acid reductoisomerase
83	 61.07	0	112996..114870	+	624	119025101	-	BAD_0083	-	sialic acid-specific 9-O-acetylesterase
84	 61.18	0	115008..116537	-	509	119025102	aroP	BAD_0084	-	aromatic amino acid transport protein AroP
85	 61.80	0	116725..119886	+	1053	119025103	-	BAD_0085	-	hypothetical protein
86	 60.78	0	119905..121179	-	424	119025104	-	BAD_0086	-	Na(+)/H(+) antiporter-like protein
87	 64.30	+1	122116..122919	+	267	119025105	-	BAD_0087	-	sortase-like protein
88	 58.94	0	123032..124609	+	525	119025106	aapA	BAD_0088	-	amino acid permease
89	 60.66	0	124790..125704	-	304	119025107	thiG	BAD_0089	-	thiazole synthase
90	 64.15	0	125855..126568	-	237	119025108	-	BAD_0090	-	thiamine biosynthesis protein ThiF
91	 62.32	0	127216..128274	+	352	119025109	-	BAD_0091	-	aldo/keto reductase family oxidoreductase
92	 60.77	0	128458..128949	+	163	119025110	-	BAD_0092	-	MarR-type transcriptional regulator
93	 61.13	0	129076..130827	+	583	119025111	-	BAD_0093	-	ABC transporter permease
94	 62.16	0	130839..132680	+	613	119025112	-	BAD_0094	-	ABC transporter permease
95	 63.61	0	132851..133831	+	326	119025113	-	BAD_0095	-	oxidoreductase
96	 62.26	0	133916..135049	-	377	119025114	-	BAD_0096	-	hypothetical protein
97	 62.47	0	135393..137180	+	595	119025115	-	BAD_0097	-	hypothetical protein
98	 62.12	0	137242..137901	+	219	119025116	-	BAD_0098	-	hypothetical protein
99	 63.29	0	138168..139439	+	423	119025117	-	BAD_0099	-	hypothetical protein
100	 62.07	0	139465..140964	+	499	119025118	-	BAD_0100	-	ABC transporter permease
59.51	MEAN

4.77	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.