IslandPath Analysis: Streptococcus sanguinis SK36



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.54   STD DEV: 4.77
Streptococcus sanguinis SK36, complete genome - 1..2388435
2270 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.21	-1	214..1566	+	450	125716888	dnaA	SSA_0001	-	chromosomal replication initiation protein
2	 37.55	-1	1725..2861	+	378	125716889	dnaN	SSA_0002	-	DNA polymerase III subunit beta
3	 38.46	-1	2989..3183	+	64	125716890	-	SSA_2390	-	hypothetical protein
4	 33.13	-2	3303..3794	-	163	125716891	-	SSA_0004	-	putative lipoprotein
5	 40.41	0	3961..5076	+	371	125716892	-	SSA_0005	-	translation-associated GTPase
6	 34.74	-1	5149..5718	+	189	125716893	pth	SSA_0006	-	peptidyl-tRNA hydrolase
7	 36.87	-1	5711..9214	+	1167	125716894	trcF	SSA_0008	-	transcription-repair coupling factor
8	 38.58	-1	9305..9571	+	88	125716895	-	SSA_0009	-	ribosome-associated heat shock protein (S4), putative
9	 38.48	-1	9564..9932	+	122	125716896	divIC	SSA_0010	-	cell division protein DivIC, putative
10	 32.56	-2	9935..10063	+	42	125716897	-	SSA_0011	-	hypothetical protein
11	 37.54	-1	10056..11339	+	427	125716898	-	SSA_0012	-	Beta-lactamase class A, putative
12	 38.11	-1	11336..12613	+	425	125716899	mesJ	SSA_0013	-	PP family ATPase
13	 32.79	-2	12606..13160	+	184	125716900	hpt	SSA_0014	-	hypoxanthine guanine phosphoribosyltransferase, putative
14	 41.72	0	13178..15157	+	659	125716901	ftsH	SSA_0015	-	membrane ATPase FtsH, degrades sigma32 (integral membrane cell-division Zn metallo-peptidase), putative
15	 32.72	-2	15627..16112	+	161	125716902	comX	SSA_0016	-	ComX1, transcriptional regulator of competence-specific genes, putative
16	 37.25	-1	22951..23766	+	271	125716903	mreC	SSA_0017	-	cell shape determining protein MreC, putative
17	 30.74	-2	23768..24268	+	166	125716904	mreD	SSA_0018	-	cell-shape determining protein MreD, putative
18	 42.63	0	24365..25579	+	404	125716905	pcsB	SSA_0019	-	secreted antigen GbpB/SagA; peptidoglycan hydrolase; PcsB protein precursor, putative
19	 42.55	0	25704..26669	+	321	125716906	prsA	SSA_0020	-	ribose-phosphate pyrophosphokinase
20	 44.21	0	26982..27551	+	189	125716907	-	SSA_0021	-	hypothetical protein
21	 42.94	0	27646..28488	+	280	125716908	srtB	SSA_0022	-	surface protein cell wall anchor
22	 47.06	0	28669..29841	+	390	125716909	aspC	SSA_0023	-	aromatic amino acid aminotransferase
23	 43.41	0	29834..30607	+	257	125716910	recO	SSA_0025	-	DNA repair protein RecO
24	 47.85	0	30613..31611	+	332	125716911	plsX	SSA_0026	-	putative glycerol-3-phosphate acyltransferase PlsX
25	 35.34	-1	31614..31862	+	82	125716912	acp	SSA_0027	-	Acyl carrier protein, putative
26	 41.95	0	32023..32730	+	235	125716913	purC	SSA_0028	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
27	 48.70	+1	32750..36484	+	1244	125716914	purL	SSA_0030	-	phosphoribosylformylglycinamidine synthase, putative
28	 49.86	+1	36579..38018	+	479	125716915	purF	SSA_0031	-	amidophosphoribosyltransferase
29	 47.31	0	38078..39100	+	340	125716916	purM	SSA_0032	-	phosphoribosylaminoimidazole synthetase
30	 47.34	0	39097..39660	+	187	125716917	purN	SSA_0033	-	phosphoribosylglycinamide formyltransferase
31	 27.84	-2	39687..40451	+	254	125716918	-	SSA_0034	-	hypothetical protein
32	 49.65	+1	40455..42017	+	520	125716919	purH	SSA_0035	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
33	 45.38	0	42140..44089	-	649	125716920	-	SSA_0036	-	secreted protein, function in cell-wall metabolism (amidase), putative
34	 51.70	+1	44412..45674	+	420	125716921	purD	SSA_0037	-	phosphoribosylamine--glycine ligase
35	 51.12	+1	45973..46461	+	162	125716922	purE	SSA_0039	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit, putative
36	 50.00	+1	46448..47539	+	363	125716923	purK	SSA_0040	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
37	 39.47	0	47802..48029	+	75	125716924	-	SSA_0041	-	hypothetical protein
38	 44.06	0	48033..48731	+	232	125716925	-	SSA_0042	-	amino acid recemase, putative
39	 37.72	-1	48941..49168	+	75	125716926	-	SSA_0043	-	hypothetical protein
40	 29.02	-2	49181..50317	+	378	125716927	-	SSA_0044	-	hypothetical protein
41	 27.00	-2	50473..51009	+	178	125716928	-	SSA_0045	-	hypothetical protein
42	 51.85	+1	51034..52329	+	431	125716929	purB	SSA_0046	-	adenylosuccinate lyase
43	 44.44	0	52374..52940	-	188	125716930	-	SSA_0047	-	NAD(P)H dehydrogenase (quinone), putative
44	 44.05	0	52937..53533	-	198	125716931	-	SSA_0048	-	TetR/AcrR family transcriptional regulator
45	 49.49	+1	53752..54741	+	329	125716932	-	SSA_0049	-	dihydroxyacetone kinase (Dak1), putative
46	 52.50	+1	54752..55330	+	192	125716933	-	SSA_0050	-	dihydroxyacetone kinase phosphatase domain-containing protein
47	 49.07	+1	55330..55704	+	124	125716934	-	SSA_0051	-	dihydroxyacetone kinase phosphotransfer protein, putative
48	 42.40	0	56032..56748	-	238	125716935	-	SSA_0052	-	GntR family transcriptional regulator
49	 48.10	0	56888..58675	+	595	125716936	-	SSA_0053	-	Beta-galactosidase, putative
50	 47.59	0	58672..59148	+	158	125716937	-	SSA_0054	-	phosphotransferase system sugar-specific EIIB component, putative
51	 45.14	0	59174..60079	+	301	125716938	-	SSA_0055	-	PTS system, IIC component, putative
52	 42.18	0	60066..60890	+	274	125716939	-	SSA_0056	-	phosphotransferase system sugar-specific EIID component, putative
53	 42.72	0	60902..61306	+	134	125716940	-	SSA_0057	-	phosphotransferase system sugar-specific EII component, putative
54	 49.79	+1	61617..62795	+	392	125716941	agaS	SSA_0060	-	tagatose-6-phosphate ketose/aldose isomerase, putative
55	 50.19	+1	62810..63847	+	345	125716942	-	SSA_0061	-	tagatose 1,6-diphosphate aldolase
56	 49.28	+1	63872..64918	+	348	125716943	galM	SSA_0062	-	aldose 1-epimerase, putative
57	 50.35	+1	65475..66473	+	332	125716944	ruvB	SSA_0063	-	Holliday junction DNA helicase B
58	 45.44	0	66470..67039	+	189	125716945	-	SSA_0064	-	hypothetical protein
59	 44.68	0	67315..67737	+	140	125716946	-	SSA_0065	-	low molecular weight phosphotyrosine protein phosphatase, putative
60	 44.20	0	67742..68155	+	137	125716947	-	SSA_0066	-	hypothetical protein
61	 45.96	0	68145..69950	+	601	125716948	-	SSA_0067	-	acyltransferase
62	 45.69	0	70254..72908	+	884	125716949	adhE	SSA_0068	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
63	 46.55	0	73177..73857	+	226	125716950	-	SSA_0069	-	hypothetical protein
64	 43.81	0	73973..74974	+	333	125716951	axe1	SSA_0070	-	acetylxylan esterase, putative
65	 49.07	+1	75350..76048	+	232	125716952	nanE	SSA_0071	-	N-acetylmannosamine-6-phosphate 2-epimerase
66	 42.50	0	76062..77195	+	377	125716953	-	SSA_0072	-	ABC sugar transporter, MsmK-like protein, putative
67	 31.13	-2	77219..77671	+	150	125716954	-	SSA_0073	-	hypothetical protein
68	 36.15	-1	77689..79035	+	448	125716955	-	SSA_0074	-	ABC transporter substrate-binding protein-sugar transport, putative
69	 37.97	-1	79103..79987	+	294	125716956	-	SSA_0075	-	ABC sugar transporter, permease protein, putative
70	 36.81	-1	79987..80820	+	277	125716957	-	SSA_0076	-	ABC sugar transporter, permease protein, putative
71	 39.40	0	80878..81981	+	367	125716958	-	SSA_0077	-	oxidoreductase, putative
72	 46.51	0	82044..82961	+	305	125716959	-	SSA_0078	-	N-acetylneuraminate lyase, putative
73	 46.67	0	82995..83879	+	294	125716960	glk	SSA_0079	-	ROK family protein, putative
74	 40.00	0	83925..84254	+	109	125716961	blpT	SSA_0080	-	superfamily I DNA/RNA helicase
75	 42.72	0	84310..85161	-	283	125716962	-	SSA_0081	-	RpiR family transcriptional regulator
76	 49.07	+1	85577..85900	+	107	125716963	-	SSA_0083	-	hypothetical protein
77	 49.69	+1	85890..87845	+	651	125716964	ntpI	SSA_0085	-	V-type ATP synthase subunit I
78	 48.33	+1	87979..88458	+	159	125716965	ntpK	SSA_0086	-	V-type ATP synthase subunit K
79	 49.75	+1	88469..89059	+	196	125716966	ntpE	SSA_0087	-	V-type sodium ATPase, subunit E, putative
80	 50.00	+1	89070..90083	+	337	125716967	ntpC	SSA_0088	-	V-type sodium ATPase, subunit C, putative
81	 48.91	+1	90070..90390	+	106	125716968	ntpG	SSA_0089	-	V-type ATP synthase subunit F
82	 48.85	+1	90398..91093	+	231	125716969	-	SSA_0090	-	acetyltransferase
83	 52.24	+1	91177..93048	+	623	125716970	ntpA	SSA_0091	-	V-type ATP synthase subunit A
84	 52.33	+1	93035..94429	+	464	125716971	ntpB	SSA_0092	-	V-type ATP synthase subunit B
85	 52.24	+1	94426..95049	+	207	125716972	ntpD	SSA_0093	-	V-type ATP synthase subunit D
86	 45.81	0	95485..96582	+	365	125716973	-	SSA_0094	-	cell wall metabolism, LysM type protein, putative
87	 48.28	0	96695..98179	+	494	125716974	thrC	SSA_0095	-	threonine synthase
88	 51.64	+1	98288..99565	+	425	125716975	norN	SSA_0097	-	MATE family transporter
89	 45.85	0	99562..100176	+	204	125716976	-	SSA_0098	-	HAD superfamily hydrolase
90	 35.39	-1	100224..100709	-	161	125716977	-	SSA_0099	-	hypothetical protein
91	 49.49	+1	100820..103462	+	880	125716978	polA	SSA_0100	-	DNA polymerase I
92	 48.17	0	103736..104173	+	145	125716979	-	SSA_0101	-	hypothetical protein
93	 46.78	0	104175..104687	+	170	125716980	-	SSA_0102	-	hypothetical protein
94	 42.28	0	104720..105580	-	286	125716981	-	SSA_0103	-	integral membrane protein
95	 49.69	+1	105733..106875	+	380	125716982	tgt	SSA_0104	-	queuine tRNA-ribosyltransferase
96	 47.26	0	106901..107539	+	212	125716983	-	SSA_0105	-	uridine kinase, putative
97	 42.72	0	107912..108220	+	102	125716984	rpsJ	SSA_0106	-	30S ribosomal protein S10
98	 43.70	0	108305..108931	+	208	125716985	rplC	SSA_0107	-	50S ribosomal protein L3
99	 44.23	0	108956..109579	+	207	125716986	rplD	SSA_0108	-	50S ribosomal protein L4
100	 39.73	0	109579..109875	+	98	125716987	rplW	SSA_0109	-	50S ribosomal protein L23
43.54	MEAN

4.77	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.