IslandPath Analysis: Burkholderia cenocepacia HI2424



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.28   STD DEV: 3.76
Burkholderia cenocepacia HI2424 chromosome 3, complete sequence - 1..1055417
918 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.42	-1	49..240	-	63	116686246	-	Bcen2424_5867	-	Flp/Fap pilin component
2	 58.33	-2	380..571	-	63	116686247	-	Bcen2424_5868	-	Flp/Fap pilin component
3	 59.06	-2	743..1084	+	113	116686248	-	Bcen2424_5869	-	hypothetical protein
4	 67.23	0	1621..2859	+	412	116686249	-	Bcen2424_5870	-	hypothetical protein
5	 70.00	0	2856..4235	+	459	116686250	-	Bcen2424_5871	-	hypothetical protein
6	 67.43	0	4260..5303	+	347	116686251	-	Bcen2424_5872	-	glycosyl transferase family protein
7	 68.23	0	5316..5699	+	127	116686252	-	Bcen2424_5873	-	GtrA family protein
8	 59.33	-2	5995..6498	+	167	116686253	-	Bcen2424_5874	-	hypothetical protein
9	 68.70	0	6564..7103	+	179	116686254	-	Bcen2424_5875	-	hypothetical protein
10	 68.15	0	7176..8117	-	313	116686255	-	Bcen2424_5876	-	extracellular solute-binding protein
11	 68.45	0	8204..9325	-	373	116686256	-	Bcen2424_5877	-	hypothetical protein
12	 72.18	+1	9720..11171	+	483	116686257	-	Bcen2424_5878	-	major facilitator transporter
13	 68.72	0	11224..12492	+	422	116686258	-	Bcen2424_5879	-	phosphoribosylglycinamide synthetase
14	 70.66	0	12501..13376	-	291	116686259	-	Bcen2424_5880	-	LysR family transcriptional regulator
15	 72.80	+1	13524..14468	+	314	116686260	-	Bcen2424_5881	-	hypothetical protein
16	 69.72	0	14506..15717	+	403	116686261	-	Bcen2424_5882	-	phosphoribosylglycinamide synthetase
17	 66.75	0	15701..16897	-	398	116686262	-	Bcen2424_5883	-	major facilitator transporter
18	 64.98	0	16993..17883	+	296	116686263	-	Bcen2424_5884	-	LysR family transcriptional regulator
19	 61.63	-1	17950..18564	-	204	116686264	-	Bcen2424_5885	-	NIPSNAP family protein
20	 62.54	-1	18661..19581	+	306	116686265	-	Bcen2424_5886	-	LysR family transcriptional regulator
21	 58.67	-2	19765..19989	-	74	116686266	-	Bcen2424_5887	-	hypothetical protein
22	 53.43	-2	20265..20468	-	67	116686267	-	Bcen2424_5888	-	cold-shock DNA-binding domain-containing protein
23	 64.40	0	20776..21879	-	367	116686268	-	Bcen2424_5889	-	alpha/beta hydrolase fold
24	 63.97	0	22087..22716	+	209	116686269	-	Bcen2424_5890	-	TetR family transcriptional regulator
25	 65.80	0	23072..23992	-	306	116686270	-	Bcen2424_5891	-	LysR family transcriptional regulator
26	 69.30	0	24074..25024	+	316	116686271	-	Bcen2424_5892	-	2-dehydropantoate 2-reductase
27	 66.41	0	25021..25413	+	130	116686272	-	Bcen2424_5893	-	glyoxalase/bleomycin resistance protein/dioxygenase
28	 64.71	0	25416..25874	+	152	116686273	-	Bcen2424_5894	-	dehydratase
29	 66.18	0	25874..27094	+	406	116686274	-	Bcen2424_5895	-	Formyl-CoA transferase
30	 68.22	0	27091..27927	+	278	116686275	-	Bcen2424_5896	-	shikimate 5-dehydrogenase
31	 65.69	0	28105..29337	+	410	116686276	-	Bcen2424_5897	-	major facilitator transporter
32	 55.56	-2	29451..30278	-	275	116686277	-	Bcen2424_5898	-	methyltransferase type 11
33	 67.11	0	30565..31467	-	300	116686278	-	Bcen2424_5899	-	6-phosphogluconate dehydrogenase, NAD-binding
34	 64.94	0	31525..32853	-	442	116686279	-	Bcen2424_5900	-	major facilitator transporter
35	 64.42	0	32870..33181	-	103	116686280	-	Bcen2424_5901	-	hypothetical protein
36	 66.34	0	33249..34169	+	306	116686281	-	Bcen2424_5902	-	LysR family transcriptional regulator
37	 67.30	0	34472..35575	+	367	116686282	-	Bcen2424_5903	-	tartrate dehydrogenase
38	 69.22	0	35579..37027	+	482	116686283	-	Bcen2424_5904	-	aldehyde dehydrogenase
39	 65.39	0	37307..38245	-	312	116686284	-	Bcen2424_5905	-	cysteine synthase
40	 63.24	-1	38292..38699	-	135	116686285	-	Bcen2424_5906	-	membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG)
41	 68.63	0	38922..39788	-	288	116686286	-	Bcen2424_5907	-	NmrA family protein
42	 66.02	0	39999..40919	+	306	116686287	-	Bcen2424_5908	-	LysR family transcriptional regulator
43	 60.59	-1	40981..42033	+	350	116686288	-	Bcen2424_5909	-	IS605 family transposase OrfB
44	 65.21	0	42103..43065	-	320	116686289	-	Bcen2424_5910	-	AraC family transcriptional regulator
45	 64.29	0	43218..44141	+	307	116686290	-	Bcen2424_5911	-	short-chain dehydrogenase/reductase SDR
46	 65.32	0	44309..45049	-	246	116686291	-	Bcen2424_5912	-	GntR family transcriptional regulator
47	 68.55	0	45046..46428	-	460	116686292	-	Bcen2424_5913	-	aminotransferase
48	 65.24	0	46439..47773	-	444	116686293	-	Bcen2424_5914	-	glutamate--ammonia ligase
49	 61.78	-1	47855..48202	-	115	116686294	-	Bcen2424_5915	-	hypothetical protein
50	 67.45	0	48274..49038	-	254	116686295	-	Bcen2424_5916	-	short-chain dehydrogenase/reductase SDR
51	 67.10	0	49180..50097	+	305	116686296	-	Bcen2424_5917	-	LysR family transcriptional regulator
52	 66.96	0	50232..50576	-	114	116686297	-	Bcen2424_5918	-	regulatory protein, LysR
53	 65.58	0	50634..51371	-	245	116686298	-	Bcen2424_5919	-	extracellular solute-binding protein
54	 66.01	0	51588..52499	-	303	116686299	-	Bcen2424_5920	-	ABC transporter related
55	 65.54	0	52545..53519	-	324	116686300	-	Bcen2424_5921	-	binding-protein-dependent transport systems inner membrane component
56	 72.65	+1	53583..55454	-	623	116686301	-	Bcen2424_5922	-	amidase
57	 70.40	0	55451..59068	-	1205	116686302	-	Bcen2424_5923	-	biotin carboxylation region
58	 66.36	0	59157..59813	-	218	116686303	-	Bcen2424_5924	-	hypothetical protein
59	 68.65	0	59825..60580	-	251	116686304	-	Bcen2424_5925	-	hypothetical protein
60	 68.16	0	60780..61046	+	88	116686305	-	Bcen2424_5926	-	hypothetical protein
61	 66.67	0	61466..62488	+	340	116686306	-	Bcen2424_5927	-	ABC transport system substrate-binding protein
62	 61.67	-1	62636..63355	-	239	116686307	-	Bcen2424_5928	-	metallophosphoesterase
63	 55.11	-2	63639..64088	-	149	116686308	-	Bcen2424_5929	-	GCN5-related N-acetyltransferase
64	 55.43	-2	64481..65005	-	174	116686309	-	Bcen2424_5930	-	GCN5-related N-acetyltransferase
65	 52.08	-2	65108..65539	-	143	116686310	-	Bcen2424_5931	-	NUDIX hydrolase
66	 60.28	-1	65833..66114	+	93	116686311	-	Bcen2424_5932	-	hypothetical protein
67	 56.26	-2	66426..66992	-	188	116686312	-	Bcen2424_5933	-	hypothetical protein
68	 57.94	-2	67251..68213	-	320	116686313	-	Bcen2424_5934	-	LysR family transcriptional regulator
69	 61.97	-1	69028..69261	+	77	116686314	-	Bcen2424_5935	-	hypothetical protein
70	 63.90	0	69400..70521	-	373	116686315	-	Bcen2424_5936	-	histidine kinase
71	 71.01	0	70767..72032	+	421	116686316	-	Bcen2424_5937	-	poly(3-hydroxybutyrate) depolymerase-like protein
72	 67.70	0	72080..73915	-	611	116686317	-	Bcen2424_5938	-	periplasmic sensor signal transduction histidine kinase
73	 66.46	0	73933..75351	-	472	116686318	-	Bcen2424_5939	-	response regulator receiver modulated metal dependent phosphohydrolase
74	 66.01	0	75473..75928	-	151	116686319	-	Bcen2424_5940	-	GCN5-related N-acetyltransferase
75	 59.75	-2	76186..76590	-	134	116686320	-	Bcen2424_5941	-	hypothetical protein
76	 63.76	0	76761..77966	-	401	116686321	-	Bcen2424_5942	-	sodium:dicarboxylate symporter
77	 59.13	-2	77983..78645	-	220	116686322	-	Bcen2424_5943	-	GntR family transcriptional regulator
78	 59.35	-2	78796..79260	+	154	116686323	-	Bcen2424_5944	-	GCN5-related N-acetyltransferase
79	 57.37	-2	79306..79617	+	103	116686324	-	Bcen2424_5945	-	hypothetical protein
80	 64.01	0	80029..81195	+	388	116686325	-	Bcen2424_5946	-	porin
81	 67.18	0	81228..82193	-	321	116686326	-	Bcen2424_5947	-	LysR family transcriptional regulator
82	 66.91	0	82311..83531	+	406	116686327	-	Bcen2424_5948	-	major facilitator transporter
83	 67.11	0	83528..84424	+	298	116686328	-	Bcen2424_5949	-	2-dehydropantoate 2-reductase
84	 64.00	0	84559..85158	-	199	116686329	-	Bcen2424_5950	-	ThiJ/PfpI domain-containing protein
85	 65.63	0	85568..86725	+	385	116686330	-	Bcen2424_5951	-	hypothetical protein
86	 66.05	0	86785..86946	+	53	116686331	-	Bcen2424_5952	-	putative lipoprotein
87	 61.60	-1	87028..87501	-	157	116686332	-	Bcen2424_5953	-	hypothetical protein
88	 67.18	0	87504..88676	-	390	116686333	-	Bcen2424_5954	-	chromate transporter
89	 67.08	0	88696..89658	-	320	116686334	-	Bcen2424_5955	-	putative chromate resistance signal peptide protein
90	 63.03	-1	90021..90350	+	109	116686335	-	Bcen2424_5956	-	hypothetical protein
91	 61.56	-1	90609..90941	+	110	116686336	-	Bcen2424_5957	-	hypothetical protein
92	 56.47	-2	90945..91199	+	84	116686337	-	Bcen2424_5958	-	hypothetical protein
93	 62.91	-1	91233..91445	+	70	116686338	-	Bcen2424_5959	-	ribosomal protein S21
94	 62.23	-1	91535..92638	+	367	116686339	-	Bcen2424_5960	-	transposase, IS4 family protein
95	 66.28	0	93015..94292	-	425	116686340	-	Bcen2424_5961	-	periplasmic sensor signal transduction histidine kinase
96	 67.07	0	94276..95025	-	249	116686341	-	Bcen2424_5962	-	two component transcriptional regulator
97	 68.02	0	95351..96607	+	418	116686342	-	Bcen2424_5963	-	RND family efflux transporter MFP subunit
98	 64.95	0	96620..99817	+	1065	116686343	-	Bcen2424_5964	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
99	 66.74	0	99814..101241	+	475	116686344	-	Bcen2424_5965	-	RND efflux system outer membrane lipoprotein
100	 69.62	0	101297..102346	+	349	116686345	-	Bcen2424_5966	-	extracellular solute-binding protein
67.28	MEAN

3.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.