IslandPath Analysis: Bacillus clausii KSM-K16



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.68   STD DEV: 4.04
Bacillus clausii KSM-K16, complete genome - 1..4303871
4096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.92	0	183..1538	+	451	56961783	dnaA	ABC0001	-	chromosomal replication initiation protein
2	 41.38	0	1708..2850	+	380	56961784	dnaN	ABC0002	-	DNA polymerase III subunit beta
3	 49.32	+1	3015..3233	+	72	56961785	-	ABC0003	-	hypothetical protein
4	 45.31	0	3236..4354	+	372	56961786	recF	ABC0004	-	recombination protein F
5	 42.76	0	4358..4654	+	98	56961787	-	ABC0005	-	hypothetical protein
6	 47.04	0	4680..6605	+	641	56961788	gyrB	ABC0006	-	DNA gyrase subunit B
7	 46.57	0	6654..9146	+	830	56961789	gyrA	ABC0007	-	DNA gyrase subunit A
8	 44.55	0	9505..10485	+	326	56961790	-	ABC0008	-	oxidoreductase
9	 32.50	-2	10781..11380	+	199	56961791	-	ABC0009	-	bacteriocin transport permease
10	 42.16	0	17308..18111	-	267	56961792	-	ABC0010	-	hypothetical protein
11	 45.61	0	18387..19844	+	485	56961793	guaB	ABC0011	-	inositol-5-monophosphate dehydrogenase
12	 45.97	0	19990..21279	+	429	56961794	dacA	ABC0012	-	D-alanyl-D-alanine carboxypeptidase
13	 47.61	0	21418..22692	+	424	56961795	serS	ABC0013	-	seryl-tRNA synthetase
14	 49.52	+1	22706..23533	+	275	56961796	mtnU	ABC0014	-	methylthioribose recycling protein
15	 46.71	0	23557..25245	+	562	56961797	-	ABC0015	-	regulator of polyketide synthase expression
16	 39.73	-1	25496..26887	-	463	56961798	rocR	ABC0016	-	transcriptional activator of arginine utilization operon
17	 43.21	0	27106..28320	+	404	56961799	rocD	ABC0017	-	ornithine--oxo-acid transaminase
18	 41.72	0	28703..30121	+	472	56961800	-	ABC0018	-	NahC family Na(+)/H(+) antiporter
19	 33.71	-2	30316..30582	+	88	56961801	-	ABC0019	-	hypothetical protein
20	 48.87	+1	30802..31992	+	396	56961802	-	ABC0020	-	Xaa-Pro dipeptidase
21	 47.42	0	32011..33210	+	399	56961803	-	ABC0021	-	cystathionine gamma-synthase
22	 51.09	+1	33213..34406	+	397	56961804	-	ABC0022	-	N-acyl-L-amino acid amidohydrolase
23	 46.74	0	34415..35473	+	352	56961805	-	ABC0023	-	homoserine dehydrogenase
24	 49.10	+1	35487..36932	+	481	56961806	-	ABC0024	-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
25	 34.21	-2	37105..37560	-	151	56961807	-	ABC0025	-	hypothetical protein
26	 44.44	0	37759..38559	+	266	56961808	-	ABC0026	-	glutamine ABC transporter substrate-binding protein
27	 43.66	0	38602..39240	+	212	56961809	-	ABC0027	-	glutamine ABC transporter permease
28	 46.47	0	39237..39959	+	240	56961810	-	ABC0028	-	glutamine ABC transporter ATP-binding protein
29	 46.27	0	40016..41035	-	339	56961811	-	ABC0029	-	oligopeptide ABC transporter ATP-binding protein
30	 46.22	0	41004..42035	-	343	56961812	-	ABC0030	-	oligopeptide ABC transporter ATP-binding protein
31	 44.06	0	42054..43004	-	316	56961813	-	ABC0031	-	oligopeptide ABC transporter permease
32	 44.44	0	43027..43917	-	296	56961814	-	ABC0032	-	oligopeptide ABC transporter permease
33	 44.22	0	44413..46020	+	535	56961815	-	ABC0033	-	oligopeptide ABC transporter substrate-binding protein
34	 48.80	+1	46387..46884	+	165	56961816	-	ABC0034	-	cytosine/adenosine deaminase
35	 47.77	0	47446..48027	-	193	56961817	-	ABC0035	-	ATP-dependent Clp protease proteolytic subunit
36	 45.21	0	48047..48787	-	246	56961818	-	ABC0036	-	DNA-directed RNA polymerase ECF-type sigma factor
37	 45.93	0	48867..50549	+	560	56961819	dnaX	ABC0037	-	DNA-directed DNA polymerase III gamma and tau DnaX
38	 39.94	-1	50559..50876	+	105	56961820	-	ABC0038	-	hypothetical protein
39	 45.00	0	50889..51488	+	199	56961821	recR	ABC0039	-	recombination protein RecR
40	 42.54	0	51501..51728	+	75	56961822	-	ABC0040	-	hypothetical protein
41	 43.18	0	51796..52059	+	87	56961823	bofA	ABC0041	-	inhibition of the pro-sigma-K processing machinery
42	 43.63	0	58065..59297	+	410	56961824	-	ABC0042	-	1,3-propanediol dehydrogenase
43	 30.00	-2	59311..59430	+	39	56961825	-	ABC0043	-	hypothetical protein
44	 38.30	-1	59448..60956	+	502	56961826	-	ABC0044	-	two-component sensor histidine kinase
45	 42.36	0	60953..62404	+	483	56961827	-	ABC0045	-	transcriptional regulator
46	 44.48	0	62619..63668	+	349	56961828	adhA	ABC0046	-	alcohol dehydrogenase
47	 45.49	0	63684..65180	+	498	56961829	dhaS	ABC0047	-	aldehyde dehydrogenase
48	 46.85	0	65516..66484	+	322	56961830	-	ABC0048	-	hypothetical protein
49	 50.38	+1	66939..68375	+	478	56961831	-	ABC0049	-	lysine decarboxylase
50	 46.11	0	68378..69019	+	213	56961832	tmk	ABC0050	-	thymidylate kinase
51	 44.85	0	69041..69370	+	109	56961833	-	ABC0051	-	hypothetical protein
52	 47.75	0	69377..70375	+	332	56961834	holB	ABC0052	-	DNA polymerase III subunit delta'
53	 44.57	0	70379..71206	+	275	56961835	-	ABC0053	-	hypothetical protein
54	 45.00	0	71211..71570	+	119	56961836	-	ABC0054	-	DNA replication intiation control protein YabA
55	 47.68	0	71665..72396	+	243	56961837	-	ABC0055	-	hypothetical protein
56	 45.83	0	72393..72656	+	87	56961838	-	ABC0056	-	hypothetical protein
57	 49.13	+1	72653..73519	+	288	56961839	-	ABC0057	-	corrin/porphyrin methyltransferase
58	 41.40	0	73568..73852	-	94	56961840	abrB	ABC0058	-	transition state regulatory protein
59	 45.04	0	74104..75051	+	315	56961841	-	ABC0059	-	hypothetical protein
60	 46.97	0	75067..76899	+	610	56961842	-	ABC0060	-	hypothetical protein
61	 45.27	0	77214..79181	+	655	56961843	metS	ABC0061	-	methionyl-tRNA synthetase
62	 39.14	-1	79252..79716	-	154	56961844	-	ABC0062	-	transcriptional regulator
63	 44.41	0	80070..81053	+	327	56961845	pelB	ABC0063	-	pectate lyase
64	 48.41	0	81418..83049	+	543	56961846	-	ABC0064	-	ABC transporter ATP-binding protein
65	 41.74	0	83153..83806	-	217	56961847	-	ABC0065	-	hypothetical protein
66	 44.01	0	83949..85652	+	567	56961848	-	ABC0066	-	hypothetical protein
67	 45.95	0	85832..86608	+	258	56961849	-	ABC0067	-	TatD family deoxyribonuclease
68	 47.05	0	86634..88040	+	468	56961850	-	ABC0068	-	hypothetical protein
69	 46.35	0	88033..88716	+	227	56961851	rnmV	ABC0069	-	ribonuclease M5
70	 46.69	0	88703..89593	+	296	56961852	ksgA	ABC0070	-	dimethyladenosine transferase
71	 45.16	0	89648..90526	+	292	56961853	-	ABC0071	-	hypothetical protein
72	 42.80	0	90824..91087	+	87	56961854	veg	ABC0072	-	veg protein
73	 43.50	0	91205..91381	+	58	56961855	sspF	ABC0073	-	small acid-soluble spore protein
74	 47.99	0	91560..92453	+	297	56961856	ispE	ABC0074	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
75	 44.72	0	92485..93318	+	277	56961857	purR	ABC0075	-	purine operon repressor
76	 44.35	0	93332..93703	+	123	56961858	-	ABC0076	-	translation initiation inhibitor
77	 47.14	0	93858..94154	+	98	56961859	spoVG	ABC0077	-	regulatory protein SpoVG
78	 46.30	0	94479..95843	+	454	56961860	gcaD	ABC0078	-	UDP-N-acetylglucosamine pyrophosphorylase
79	 45.11	0	95869..96819	+	316	56961861	prs	ABC0079	-	ribose-phosphate pyrophosphokinase
80	 44.90	0	96939..97595	+	218	56961862	ctc	ABC0080	-	50S ribosomal protein L25/general stress protein Ctc
81	 42.11	0	97653..98210	+	185	56961863	pth	ABC0081	-	peptidyl-tRNA hydrolase
82	 41.03	0	98364..98597	+	77	56961864	-	ABC0082	-	hypothetical protein
83	 45.13	0	98869..102411	+	1180	56961865	mfd	ABC0083	-	transcription-repair coupling factor
84	 45.19	0	102586..103125	+	179	56961866	spoVT	ABC0084	-	stage V sporulation protein T, transcriptional regulator
85	 41.70	0	103166..103882	+	238	56961867	-	ABC0085	-	hypothetical protein
86	 47.32	0	103913..104977	-	354	56961868	murG	ABC0086	-	N-acetylglucosaminyl transferase
87	 42.11	0	105011..105568	-	185	56961869	-	ABC0087	-	hypothetical protein
88	 48.05	0	105947..107509	+	520	56961870	-	ABC0088	-	hypothetical protein
89	 47.31	0	107523..108989	+	488	56961871	-	ABC0089	-	hypothetical protein
90	 41.41	0	108961..109257	+	98	56961872	-	ABC0090	-	heat shock protein
91	 49.02	+1	109257..109919	+	220	56961873	-	ABC0091	-	hypothetical protein
92	 49.48	+1	110060..111025	-	321	56961874	-	ABC0092	-	2-ketogluconate reductase
93	 48.39	0	111156..111653	+	165	56961875	-	ABC0093	-	ribosomal-protein-alanine acetyltransferase
94	 45.54	0	111735..112799	+	354	56961876	-	ABC0094	-	thioredoxin reductase
95	 44.61	0	112887..113480	+	197	56961877	-	ABC0095	-	hypothetical protein
96	 42.86	0	113615..113929	+	104	56961878	-	ABC0096	-	hypothetical protein
97	 42.73	0	113929..114492	+	187	56961879	-	ABC0097	-	hypothetical protein
98	 44.27	0	114489..114881	+	130	56961880	divIC	ABC0098	-	cell-division initiation protein
99	 49.88	+1	114959..115387	+	142	56961881	-	ABC0099	-	hypothetical protein
100	 46.56	0	115875..117197	+	440	56961882	-	ABC0100	-	magnesium citrate secondary transporter
44.68	MEAN

4.04	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.