IslandPath Analysis: Mycobacterium bovis AF2122/97



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium bovis AF2122/97, complete genome - 1..4345492
3920 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.92	-1	1..1524	+	507	31791178	dnaA	Mb0001	-	chromosomal replication initiation protein
2	 60.13	-1	2052..3260	+	402	31791179	dnaN	Mb0002	-	DNA polymerase III subunit beta
3	 60.10	-1	3280..4437	+	385	31791180	recF	Mb0003	-	recombination protein F
4	 65.96	0	4434..4997	+	187	31791181	-	Mb0004	-	hypothetical protein
5	 60.14	-1	5123..7267	+	714	31791182	gyrB	Mb0005	-	DNA gyrase subunit B
6	 63.85	0	7302..9818	+	838	31791183	gyrA	Mb0006	-	DNA gyrase subunit A
7	 68.31	0	9914..10828	+	304	31791184	-	Mb0007	-	hypothetical protein
8	 71.00	+1	11874..12311	-	145	31791185	-	Mb0008c	-	hypothetical protein
9	 62.48	0	12468..13016	+	182	31791186	ppiA	Mb0009	-	iron-regulated peptidyl-prolyl cis-trans isomerase A
10	 61.90	-1	13222..13557	-	111	31791187	-	Mb0010c	-	hypothetical protein
11	 56.38	-2	13713..13994	-	93	31791188	-	Mb0011c	-	putative septation inhibitor protein
12	 65.02	0	14088..14876	+	262	31791189	-	Mb0012	-	hypothetical protein
13	 63.95	0	14913..15611	+	232	31791190	trpG	Mb0013	-	para-aminobenzoate synthase component II
14	 63.26	0	15589..17469	-	626	31791191	pknB	Mb0014c	-	transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B)
15	 67.75	0	17466..18761	-	431	31791192	pknA	Mb0015c	-	transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A)
16	 64.50	0	18758..20233	-	491	31791193	pbpA	Mb0016c	-	penicillin-binding protein PbpA
17	 62.13	0	20230..21639	-	469	31791194	rodA	Mb0017c	-	cell division protein RodA
18	 67.57	0	21636..23180	-	514	31791195	ppp	Mb0018c	-	serine/threonine phosphatase
19	 62.82	0	23269..23736	-	155	31791196	-	Mb0019c	-	hypothetical protein
20	 66.48	0	23860..25425	-	521	31791197	TB39.8	Mb0020c	-	hypothetical protein
21	 66.05	0	25894..26862	-	322	31791198	-	Mb0021c	-	hypothetical protein
22	 68.33	0	27004..27423	-	139	31791199	whiB5	Mb0022c	-	putative transcriptional regulatory protein WHIB-like WHIB5
23	 67.32	0	27576..28346	+	256	31791200	-	Mb0023	-	transcriptional regulatory protein
24	 69.30	+1	28343..29176	+	277	31791201	-	Mb0024	-	hypothetical protein
25	 65.01	0	29225..29587	+	120	31791202	-	Mb0026	-	hypothetical protein
26	 65.48	0	29702..31135	+	477	31791203	-	Mb0027	-	hypothetical protein
27	 62.89	0	31173..31490	+	105	31791204	-	Mb0028	-	hypothetical protein
28	 63.73	0	31498..31803	+	101	31791205	-	Mb0029	-	hypothetical protein
29	 66.03	0	32041..33138	+	365	31791206	-	Mb0030	-	hypothetical protein
30	 65.45	0	33208..33537	+	109	31791207	-	Mb0031	-	hypothetical protein
31	 66.67	0	33566..33778	+	70	31791208	-	Mb0032	-	putative remnant of a transposase
32	 62.13	0	34279..36594	+	771	31791209	bioF2	Mb0033	-	8-amino-7-oxononanoate synthase BioF2
33	 57.20	-2	36591..36854	+	87	31791210	acpA	Mb0034	-	acyl carrier protein AcpA
34	 65.66	0	36851..37246	+	131	31791211	-	Mb0035	-	hypothetical protein
35	 63.59	0	37243..38931	+	562	31791212	fadD34	Mb0036	-	fatty-acid-CoA ligase
36	 68.86	0	39040..39813	-	257	31791213	-	Mb0037c	-	hypothetical protein
37	 67.72	0	39861..41186	-	441	31791214	-	Mb0038c	-	integral membrane protein
38	 65.19	0	41288..41896	+	202	31791215	-	Mb0039	-	hypothetical protein
39	 71.55	+1	41988..42335	-	115	31791216	-	Mb0040c	-	transmembrane protein
40	 67.52	0	42417..43349	-	310	31791217	mtc28	Mb0041c	-	secreted proline rich protein MTC28 (proline rich 28 kDa antigen)
41	 62.96	0	43546..46455	+	969	31791218	leuS	Mb0042	-	leucyl-tRNA synthetase
42	 63.80	0	46565..47191	-	208	31791219	-	Mb0043c	-	MarR family transcriptional regulator
43	 63.67	0	47350..48084	-	244	31791220	-	Mb0044c	-	GntR family transcriptional regulator
44	 66.54	0	48217..49011	-	264	31791221	-	Mb0045c	-	oxidoreductase
45	 67.11	0	49027..49923	-	298	31791222	-	Mb0046c	-	hydrolase
46	 64.04	0	50005..51108	-	367	31791223	ino1	Mb0047c	-	myo-inositol-1-phosphate synthase INO1 (inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (glucose 6-phosphate cyclase) (glucocycloaldolase)
47	 66.48	0	51169..51711	-	180	31791224	-	Mb0048c	-	hypothetical protein
48	 65.86	0	51812..52681	-	289	31791225	-	Mb0049c	-	hypothetical protein
49	 66.67	0	52815..53228	+	137	31791226	-	Mb0050	-	hypothetical protein
50	 63.34	0	53647..55689	+	680	31791227	ponA1	Mb0051	-	bifunctional penicillin-binding protein 1A/1B
51	 64.53	0	55686..57368	+	560	31791228	-	Mb0052	-	transmembrane protein
52	 65.96	0	57400..57963	+	187	31791229	-	Mb0053	-	hypothetical protein
53	 60.14	-1	58182..58472	+	96	31791230	rpsF	Mb0054	-	30S ribosomal protein S6
54	 66.67	0	58576..59070	+	164	31791231	ssb	Mb0055	-	single-strand DNA-binding protein
55	 64.71	0	59112..59366	+	84	31791232	rpsR	Mb0056	-	30S ribosomal protein S18
56	 62.09	0	59399..59857	+	152	31791233	rplI	Mb0057	-	50S ribosomal protein L9
57	 60.73	-1	59886..60407	+	173	31791234	-	Mb0058	-	hypothetical protein
58	 62.90	0	60386..63010	+	874	31791235	dnaB	Mb0059	-	replicative DNA helicase
59	 61.90	-1	63190..63882	+	230	31791236	-	Mb0060	-	hypothetical protein
60	 60.06	-1	63899..64957	+	352	31791237	-	Mb0061	-	hypothetical protein
61	 61.74	-1	64981..65406	+	141	31791238	-	Mb0062	-	hypothetical protein
62	 68.15	0	65542..66684	+	380	31791239	celA1	Mb0063	-	endo-1,4-beta-glucanase
63	 67.22	0	66913..68352	+	479	31791240	-	Mb0064	-	oxidoreductase
64	 63.64	0	68610..71549	+	979	31791241	-	Mb0065	-	hypothetical protein
65	 62.44	0	71848..72249	+	133	31791242	-	Mb0066	-	hypothetical protein
66	 61.75	-1	72301..74538	-	745	31791243	icd2	Mb0067c	-	isocitrate dehydrogenase [NADP]
67	 65.09	0	74656..75225	-	189	31791244	-	Mb0068c	-	TetR family transcriptional regulator
68	 65.79	0	75328..76239	+	303	31791245	-	Mb0069	-	short chain dehydrogenase
69	 65.08	0	76264..77649	-	461	31791246	sdaA	Mb0070c	-	L-serine dehydratase SdaA
70	 66.20	0	77646..78923	-	425	31791247	glyA2	Mb0071c	-	serine hydroxymethyltransferase
71	 64.71	0	79513..80229	+	238	31791248	-	Mb0072	-	maturase
72	 61.71	-1	80660..81709	+	349	31791249	-	Mb0073	-	glutamine-transport transmembrane protein ABC transporter
73	 61.68	-1	81712..82554	+	280	31791250	-	Mb0074	-	glutamine-transport ATP-binding protein ABC transporter GlnQ
74	 66.02	0	82783..84018	+	411	31791251	-	Mb0076	-	hypothetical protein
75	 64.11	0	84031..85203	+	390	31791252	-	Mb0077	-	aminotransferase
76	 62.31	0	85218..85607	-	129	31791253	-	Mb0078c	-	hypothetical protein
77	 66.19	0	85671..86501	-	276	31791254	-	Mb0079c	-	oxidoreductase
78	 68.15	0	86563..87168	+	201	31791255	-	Mb0080	-	transcriptional regulatory protein
79	 61.11	-1	87243..87836	-	197	31791256	-	Mb0081c	-	hypothetical protein
80	 68.13	0	88239..89060	+	273	31791257	-	Mb0082	-	hypothetical protein
81	 68.63	0	89057..89515	+	152	31791258	-	Mb0083	-	hypothetical protein
82	 65.51	0	89610..89954	+	114	31791259	-	Mb0084	-	transcriptional regulatory protein
83	 69.79	+1	89959..90438	+	159	31791260	-	Mb0085	-	oxidoreductase
84	 71.12	+1	90435..92363	+	642	31791261	-	Mb0086	-	oxidoreductase
85	 68.56	0	92363..93313	+	316	31791262	hycD	Mb0087	-	formate hydrogenlyase HYCD
86	 68.93	+1	93324..93986	+	220	31791263	hycP	Mb0088	-	hydrogenase HycP
87	 68.98	+1	93986..95452	+	488	31791264	hycQ	Mb0089	-	hydrogenase HycQ
88	 66.73	0	95449..96927	+	492	31791265	hycE	Mb0090	-	formate hydrogenase HycQ
89	 61.78	-1	96962..97636	+	224	31791266	-	Mb0091	-	hypothetical protein
90	 67.00	0	97793..98386	+	197	31791267	-	Mb0092	-	methyltransferase/methylase
91	 65.63	0	98515..99285	+	256	31791268	-	Mb0093	-	hypothetical protein
92	 65.10	0	99719..100486	+	255	31791269	mtn	Mb0094	-	bifunctional 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase
93	 67.59	0	100618..102903	+	761	31791270	ctpA	Mb0095	-	cation transporter P-type ATPase A
94	 67.73	0	102850..103698	-	282	31791271	-	Mb0096c	-	hypothetical protein
95	 67.30	0	103745..104698	-	317	31791272	-	Mb0097c	-	hypothetical protein
96	 63.86	0	104469..105251	-	260	31791273	-	Mb0098c	-	hypothetical protein
97	 64.94	0	105360..106751	+	463	31791274	PPE1	Mb0099	-	PPE family protein
98	 58.85	-1	106770..107639	+	289	31791275	-	Mb0100	-	oxidoreductase
99	 59.06	-1	107636..108187	+	183	31791276	-	Mb0101	-	hypothetical protein
100	 62.66	0	108192..109814	+	540	31791277	fadD10	Mb0102	-	acyl-CoA synthetase
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.