IslandPath Analysis: Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.46   STD DEV: 3.21
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome II, complete sequence - 1..350181
264 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.60	+1	15..2531	+	838	45655586	-	LIC20001	-	hypothetical protein
2	 38.16	0	2491..3423	+	310	45655587	metF	LIC20002	-	5,10 methylene tetrahydrofolate reductase
3	 37.58	0	4064..4888	-	274	45655588	-	LIC20005	-	hypothetical protein
4	 36.66	0	5214..6086	+	290	45655589	cof	LIC20006	-	haloacid dehalogenase-like protein
5	 37.11	0	6057..6347	-	96	45655590	-	LIC20007	-	hypothetical protein
6	 37.47	0	6384..7253	+	289	45655591	hemA	LIC20008	-	glutamyl-tRNA reductase
7	 38.69	0	7223..8866	+	547	45655592	hemC	LIC20009	-	porphobilinogen deaminase
8	 39.94	+1	8835..9788	+	317	45655593	hemB	LIC20010	-	delta-aminolevulinic acid dehydratase
9	 40.32	+1	9785..11116	+	443	45655594	hemL	LIC20011	-	glutamate-1-semialdehyde aminotransferase
10	 35.84	0	11116..12033	+	305	45655595	-	LIC20012	-	histidine kinase sensor protein
11	 40.69	+1	12030..12722	+	230	45655596	-	LIC20013	-	response regulator
12	 37.05	0	12712..13734	+	340	45655597	hemE	LIC20014	-	uroporphyrinogen decarboxylase
13	 37.84	0	13749..15080	+	443	45655598	hemN	LIC20015	-	coproporphyrinogen III oxidase
14	 39.33	0	15160..16143	+	327	45655599	-	LIC20016	-	hypothetical protein
15	 37.38	0	16251..17534	+	427	45655600	hemG	LIC20017	-	protoporphyrinogen oxidase
16	 35.97	0	18373..19281	-	302	45655601	hemH	LIC20018	-	ferrochelatase
17	 36.93	0	19541..20680	-	379	45655602	-	LIC20019	-	hypothetical protein
18	 38.13	0	20842..21759	+	305	45655603	-	LIC20020	-	hypothetical protein
19	 36.16	0	21752..22459	+	235	45655604	-	LIC20021	-	hypothetical protein
20	 40.46	+1	22559..23161	+	200	45655605	-	LIC20022	-	azoreductase
21	 32.82	-1	23764..24927	-	387	45655606	-	LIC20023	-	intercellular adhesion protein C
22	 38.61	0	25023..25382	+	119	45655608	-	LIC20025	-	cyclic nucleotide binding protein
23	 39.81	+1	25778..26533	+	251	45655609	-	LIC20026	-	short-chain dehydrogenase
24	 36.78	0	26509..27060	+	183	45655610	wzb	LIC20027	-	phosphotyrosine protein phosphatase
25	 40.90	+1	27090..28358	+	422	45655611	ndh	LIC20028	-	NADH dehydrogenase
26	 37.67	0	28376..28813	+	145	45655612	-	LIC20029	-	hypothetical protein
27	 31.86	-1	29256..29864	-	202	45655613	-	LIC20030	-	hypothetical protein
28	 35.88	0	30234..31058	+	274	45655614	-	LIC20031	-	short-chain dehydrogenase
29	 37.59	0	31068..31490	+	140	45655615	-	LIC20032	-	hypothetical protein
30	 39.52	0	31552..31923	+	123	45655616	-	LIC20033	-	hypothetical protein
31	 33.99	0	32250..33320	+	356	45655617	-	LIC20034	-	hypothetical protein
32	 37.72	0	34573..35895	+	440	45655618	-	LIC20035	-	hypothetical protein
33	 36.59	0	37317..37931	+	204	45655619	-	LIC20036	-	hypothetical protein
34	 38.92	0	37992..39065	+	357	45655620	moxR	LIC20037	-	methanol dehydrogenase regulator
35	 34.90	0	39072..39902	+	276	45655621	-	LIC20038	-	hypothetical protein
36	 33.45	0	39899..40768	+	289	45655622	-	LIC20039	-	hypothetical protein
37	 36.45	0	40741..41703	+	320	45655623	batA	LIC20040	-	BatA
38	 35.44	0	41700..42743	+	347	45655624	batB	LIC20041	-	BatB
39	 35.22	0	42740..43429	+	229	45655625	batC	LIC20042	-	BatC
40	 36.62	0	43426..45069	+	547	45655626	batD	LIC20043	-	BatD
41	 37.06	0	45066..46889	+	607	45655627	htpG	LIC20044	-	heat shock protein 90
42	 35.26	0	46907..47476	+	189	45655628	-	LIC20045	-	hypothetical protein
43	 32.32	-1	47457..47948	-	163	45655629	-	LIC20046	-	hypothetical protein
44	 40.34	+1	48178..49776	+	532	45655630	-	LIC20047	-	hypothetical protein
45	 34.78	0	49784..50128	-	114	45655631	-	LIC20048	-	anti-sigma factor antagonist
46	 35.78	0	50125..51144	-	339	45655632	-	LIC20049	-	hypothetical protein
47	 35.18	0	51217..52137	+	306	45655633	-	LIC20050	-	hypothetical protein
48	 33.54	0	52134..52613	+	159	45655634	-	LIC20051	-	hypothetical protein
49	 37.71	0	52991..53812	+	273	45655635	scd	LIC20052	-	fatty acid desaturase
50	 33.93	0	55114..55788	+	224	45655636	-	LIC20053	-	hypothetical protein
51	 37.48	0	57065..57715	+	216	45655637	-	LIC20054	-	hypothetical protein
52	 37.33	0	58042..58917	-	291	45655638	-	LIC20055	-	hypothetical protein
53	 35.01	0	59235..59771	+	178	45655639	-	LIC20056	-	hypothetical protein
54	 40.87	+1	59901..60869	-	322	45655640	argK	LIC20057	-	LAO/AO transport system kinase
55	 41.23	+1	60877..62889	-	670	45655641	mcm2	LIC20058	-	methylmalonyl-CoA mutase
56	 33.48	0	62996..64333	+	445	45655642	-	LIC20059	-	hypothetical protein
57	 33.33	0	65464..66156	+	230	45655643	-	LIC20060	-	hypothetical protein
58	 33.05	-1	66779..67852	-	357	45655644	-	LIC20061	-	thiol-disulfide interchange like protein
59	 38.35	0	67981..68259	+	92	45655645	hisE	LIC20062	-	phosphoribosyl-ATP pyrophosphatase
60	 31.16	-1	68263..70194	+	643	45655646	-	LIC20063	-	hypothetical protein
61	 42.35	+1	70663..71427	+	254	45655647	fabG	LIC20064	-	3-oxoacyl-(acyl-carrier protein) reductase
62	 41.88	+1	71920..72153	+	77	45655648	acpP	LIC20065	-	acyl carrier protein
63	 35.08	0	72207..72950	+	247	45655649	rnC	LIC20066	-	dsRNase III
64	 37.59	0	73327..73914	+	195	45655650	-	LIC20067	-	MutT-like protein
65	 37.11	0	73911..74996	+	361	45655651	aroB	LIC20068	-	3-dehydroquinate synthase
66	 35.71	0	74996..75877	+	293	45655652	-	LIC20069	-	small conductance mechanosensitive ion channel
67	 30.08	-1	76088..76579	+	163	45655653	-	LIC20070	-	hypothetical protein
68	 39.56	0	77095..78651	+	518	45655654	-	LIC20071	-	putative FAD-dependent dehydrogenase
69	 41.67	+1	78701..79240	+	179	45655655	-	LIC20072	-	hypothetical protein
70	 37.23	0	79841..80251	-	136	45655656	-	LIC20073	-	hypothetical protein
71	 36.38	0	80308..82245	-	645	45655657	-	LIC20074	-	long-chain-fatty-acid--CoA ligase
72	 35.54	0	82407..85346	+	979	45655658	-	LIC20075	-	adenylate/guanylate cyclase
73	 39.18	0	85904..86656	-	250	45655659	-	LIC20076	-	putative S-adenosyl methionine dependent methyltransferase like protein
74	 35.01	0	86696..88126	-	476	45655660	-	LIC20077	-	polysaccharide deacetylase
75	 40.31	+1	88319..88834	-	171	45655661	-	LIC20078	-	hypothetical protein
76	 34.69	0	89587..90396	+	269	45655662	nagD	LIC20079	-	haloacid dehalogenase-like protein
77	 34.97	0	90403..90831	-	142	45655663	-	LIC20080	-	4-hydroxybenzoyl-CoA thioesterase
78	 30.40	-1	91097..91675	-	192	45655664	-	LIC20081	-	TetR family transcriptional regulator
79	 43.17	+2	92473..93489	+	338	45655665	-	LIC20082	-	ArsR family transcriptional regulator
80	 41.72	+1	93491..94801	+	436	45655666	ahcY	LIC20083	-	S-adenosyl-L-homocysteine hydrolase
81	 40.33	+1	94874..95173	+	99	45655667	-	LIC20084	-	ferredoxin
82	 40.52	+1	95220..98963	+	1247	45655668	metH	LIC20085	-	B12-dependent methionine synthase
83	 37.46	0	99071..99409	+	112	45655669	-	LIC20086	-	hypothetical protein
84	 35.37	0	99745..100677	-	310	45655670	-	LIC20087	-	outer membrane protein
85	 39.27	0	100789..102084	+	431	45655671	pfp	LIC20088	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
86	 37.17	0	102283..104028	-	581	45655672	-	LIC20089	-	sigma factor regulatory protein
87	 38.98	0	104206..105090	-	294	45655673	argB	LIC20090	-	acetylglutamate kinase
88	 34.68	0	105080..105898	+	272	45655674	-	LIC20091	-	short-chain dehydrogenase
89	 34.65	0	106836..108578	-	580	45655675	-	LIC20092	-	hypothetical protein
90	 37.80	0	108571..109062	-	163	45655676	bcp	LIC20093	-	bacterioferritin comigratory protein
91	 36.22	0	109614..111380	+	588	45655677	-	LIC20094	-	adenylate/guanylate cyclase
92	 38.21	0	112543..112911	+	122	45655678	-	LIC20095	-	hypothetical protein
93	 39.62	0	112958..114055	+	365	45655679	-	LIC20096	-	hypothetical protein
94	 37.64	0	114072..114884	+	270	45655680	-	LIC20097	-	short-chain dehydrogenase
95	 35.67	0	114933..115832	-	299	45655681	-	LIC20098	-	phage-related integrase/recombinase
96	 35.56	0	115948..116487	-	179	45655682	aroK	LIC20099	-	shikimate kinase
97	 37.09	0	116484..117335	-	283	45655683	-	LIC20100	-	hypothetical protein
98	 39.31	0	117341..117892	-	183	45655684	cheD	LIC20101	-	hypothetical protein
99	 37.00	0	118019..119245	+	408	45655685	traB	LIC20102	-	pheromone shutdown protein
100	 33.16	-1	119569..120132	+	187	45655686	-	LIC20103	-	hypothetical protein
36.46	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.