IslandPath Analysis: Mycobacterium tuberculosis H37Rv



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.39
Mycobacterium tuberculosis H37Rv, complete genome - 1..4411532
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.92	-1	1..1524	+	507	15607143	dnaA	Rv0001	-	chromosomal replication initiation protein
2	 59.97	-1	2052..3260	+	402	15607144	dnaN	Rv0002	-	DNA polymerase III subunit beta
3	 59.93	-1	3280..4437	+	385	15607145	recF	Rv0003	-	recombination protein F
4	 66.13	0	4434..4997	+	187	15607146	-	Rv0004	-	hypothetical protein
5	 60.28	-1	5123..7267	+	714	15607147	gyrB	Rv0005	-	DNA gyrase subunit B
6	 63.89	0	7302..9818	+	838	15607148	gyrA	Rv0006	-	DNA gyrase subunit A
7	 68.20	0	9914..10828	+	304	15607149	-	Rv0007	-	hypothetical protein
8	 70.78	+1	11874..12311	-	145	15607150	-	Rv0008c	-	hypothetical protein
9	 62.48	0	12468..13016	+	182	15607151	ppiA	Rv0009	-	iron-regulated peptidyl-prolyl cis-trans isomerase A
10	 62.44	0	13133..13558	-	141	15607152	-	Rv0010c	-	hypothetical protein
11	 56.38	-2	13714..13995	-	93	15607153	-	Rv0011c	-	putative septation inhibitor protein
12	 64.77	0	14089..14877	+	262	15607154	-	Rv0012	-	hypothetical protein
13	 63.95	0	14914..15612	+	232	57116682	trpG	Rv0013	-	para-aminobenzoate synthase component II
14	 63.26	0	15590..17470	-	626	15607156	pknB	Rv0014c	-	transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B)
15	 67.67	0	17467..18762	-	431	15607157	pknA	Rv0015c	-	transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A)
16	 64.50	0	18759..20234	-	491	15607158	pbpA	Rv0016c	-	penicillin-binding protein PbpA
17	 62.13	0	20231..21640	-	469	15607159	rodA	Rv0017c	-	cell division protein RodA
18	 67.57	0	21637..23181	-	514	15607160	ppp	Rv0018c	-	serine/threonine phosphatase
19	 63.03	0	23270..23737	-	155	15607161	-	Rv0019c	-	hypothetical protein
20	 66.35	0	23861..25444	-	527	15607162	TB39.8	Rv0020c	-	hypothetical protein
21	 66.05	0	25913..26881	-	322	15607163	-	Rv0021c	-	hypothetical protein
22	 68.33	0	27023..27442	-	139	15607164	whiB5	Rv0022c	-	transcriptional regulatory protein WHIB-like WHIB5
23	 67.32	0	27595..28365	+	256	15607165	-	Rv0023	-	transcriptional regulatory protein
24	 69.03	+1	28362..29207	+	281	15607166	-	Rv0024	-	putative secreted protein P60-related protein
25	 65.29	0	29245..29607	+	120	15607167	-	Rv0025	-	hypothetical protein
26	 65.11	0	29722..31068	+	448	15607168	-	Rv0026	-	hypothetical protein
27	 62.89	0	31189..31506	+	105	15607169	-	Rv0027	-	hypothetical protein
28	 63.73	0	31514..31819	+	101	15607170	-	Rv0028	-	hypothetical protein
29	 66.12	0	32057..33154	+	365	15607171	-	Rv0029	-	hypothetical protein
30	 65.45	0	33224..33553	+	109	15607172	-	Rv0030	-	hypothetical protein
31	 66.67	0	33582..33794	+	70	15607173	-	Rv0031	-	remnant of A transposase
32	 62.05	-1	34295..36610	+	771	15607174	bioF2	Rv0032	-	8-amino-7-oxononanoate synthase BioF2
33	 56.82	-2	36607..36870	+	87	15607175	acpA	Rv0033	-	acyl carrier protein AcpA
34	 65.66	0	36867..37262	+	131	15607176	-	Rv0034	-	hypothetical protein
35	 63.59	0	37259..38947	+	562	57116683	fadD34	Rv0035	-	fatty-acid-CoA ligase
36	 68.73	0	39056..39829	-	257	15607178	-	Rv0036c	-	hypothetical protein
37	 67.72	0	39877..41202	-	441	15607179	-	Rv0037c	-	integral membrane protein
38	 65.35	0	41304..41912	+	202	15607180	-	Rv0038	-	hypothetical protein
39	 71.84	+1	42004..42351	-	115	15607181	-	Rv0039c	-	transmembrane protein
40	 67.52	0	42433..43365	-	310	57116684	mtc28	Rv0040c	-	secreted proline rich protein MTC28 (proline rich 28 kDa antigen)
41	 62.96	0	43562..46471	+	969	15607183	leuS	Rv0041	-	leucyl-tRNA synthetase
42	 63.80	0	46581..47207	-	208	15607184	-	Rv0042c	-	MarR family transcriptional regulator
43	 63.67	0	47366..48100	-	244	15607185	-	Rv0043c	-	GntR family transcriptional regulator
44	 66.54	0	48233..49027	-	264	15607186	-	Rv0044c	-	oxidoreductase
45	 67.11	0	49043..49939	-	298	15607187	-	Rv0045c	-	hydrolase
46	 63.95	0	50021..51124	-	367	15607188	ino1	Rv0046c	-	myo-inositol-1-phosphate synthase INO1 (inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (glucose 6-phosphate cyclase) (glucocycloaldolase)
47	 66.48	0	51185..51727	-	180	15607189	-	Rv0047c	-	hypothetical protein
48	 65.86	0	51828..52697	-	289	15607190	-	Rv0048c	-	hypothetical protein
49	 66.67	0	52831..53244	+	137	15607191	-	Rv0049	-	hypothetical protein
50	 63.33	0	53663..55699	+	678	57116685	ponA1	Rv0050	-	bifunctional penicillin-binding protein 1A/1B
51	 64.53	0	55696..57378	+	560	15607193	-	Rv0051	-	transmembrane protein
52	 65.96	0	57410..57973	+	187	15607194	-	Rv0052	-	hypothetical protein
53	 60.14	-1	58192..58482	+	96	15607195	rpsF	Rv0053	-	30S ribosomal protein S6
54	 66.67	0	58586..59080	+	164	15607196	ssb	Rv0054	-	single-strand DNA-binding protein
55	 64.71	0	59122..59376	+	84	57116686	rpsR	Rv0055	-	30S ribosomal protein S18
56	 62.09	0	59409..59867	+	152	15607198	rplI	Rv0056	-	50S ribosomal protein L9
57	 60.73	-1	59896..60417	+	173	15607199	-	Rv0057	-	hypothetical protein
58	 62.82	0	60396..63020	+	874	15607200	dnaB	Rv0058	-	replicative DNA helicase
59	 61.90	-1	63200..63892	+	230	15607201	-	Rv0059	-	hypothetical protein
60	 60.06	-1	63909..64967	+	352	15607202	-	Rv0060	-	hypothetical protein
61	 61.74	-1	64991..65416	+	141	15607203	-	Rv0061	-	hypothetical protein
62	 68.24	0	65552..66694	+	380	57116687	celA1	Rv0062	-	endo-1,4-beta-glucanase
63	 67.22	0	66923..68362	+	479	15607205	-	Rv0063	-	oxidoreductase
64	 63.67	0	68620..71559	+	979	15607206	-	Rv0064	-	hypothetical protein
65	 62.44	0	71821..72222	+	133	15607207	-	Rv0065	-	hypothetical protein
66	 61.80	-1	72274..74511	-	745	15607208	icd2	Rv0066c	-	isocitrate dehydrogenase [NADP]
67	 65.09	0	74629..75198	-	189	15607209	-	Rv0067c	-	TetR family transcriptional regulator
68	 65.79	0	75301..76212	+	303	15607210	-	Rv0068	-	short chain dehydrogenase
69	 65.08	0	76237..77622	-	461	15607211	sdaA	Rv0069c	-	L-serine dehydratase SdaA
70	 66.12	0	77619..78896	-	425	15607212	glyA2	Rv0070c	-	serine hydroxymethyltransferase
71	 64.69	0	79486..80193	+	235	15607213	-	Rv0071	-	maturase
72	 61.71	-1	80624..81673	+	349	15607214	-	Rv0072	-	glutamine-transport transmembrane protein ABC transporter
73	 62.64	0	81676..82668	+	330	15607215	-	Rv0073	-	glutamine-transport ATP-binding protein ABC transporter
74	 66.02	0	82748..83983	+	411	15607216	-	Rv0074	-	hypothetical protein
75	 64.11	0	83996..85168	+	390	15607217	-	Rv0075	-	aminotransferase
76	 62.31	0	85183..85572	-	129	15607218	-	Rv0076c	-	hypothetical protein
77	 66.19	0	85636..86466	-	276	15607219	-	Rv0077c	-	oxidoreductase
78	 67.99	0	86528..87133	+	201	15607220	-	Rv0078	-	transcriptional regulatory protein
79	 61.11	-1	87208..87801	-	197	57116688	-	Rv0078A	-	hypothetical protein
80	 68.13	0	88204..89025	+	273	15607221	-	Rv0079	-	hypothetical protein
81	 68.85	0	89022..89480	+	152	15607222	-	Rv0080	-	hypothetical protein
82	 65.51	0	89575..89919	+	114	15607223	-	Rv0081	-	transcriptional regulatory protein
83	 69.58	+1	89924..90403	+	159	15607224	-	Rv0082	-	oxidoreductase
84	 71.14	+1	90400..92322	+	640	15607225	-	Rv0083	-	oxidoreductase
85	 68.56	0	92328..93278	+	316	15607226	hycD	Rv0084	-	formate hydrogenlyase HYCD
86	 68.93	+1	93289..93951	+	220	15607227	hycP	Rv0085	-	hydrogenase HycP
87	 68.92	+1	93951..95417	+	488	15607228	hycQ	Rv0086	-	hydrogenase HycQ
88	 66.80	0	95414..96892	+	492	15607229	hycE	Rv0087	-	formate hydrogenase HycE
89	 61.78	-1	96927..97601	+	224	15607230	-	Rv0088	-	hypothetical protein
90	 67.00	0	97758..98351	+	197	15607231	-	Rv0089	-	methyltransferase/methylase
91	 65.63	0	98480..99250	+	256	15607232	-	Rv0090	-	hypothetical protein
92	 65.10	0	99684..100451	+	255	15607233	mtn	Rv0091	-	bifunctional 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase
93	 67.54	0	100583..102868	+	761	15607234	ctpA	Rv0092	-	cation transporter P-type ATPase A
94	 67.61	0	102815..103663	-	282	15607235	-	Rv0093c	-	hypothetical protein
95	 67.51	0	103710..104663	-	317	15607236	-	Rv0094c	-	hypothetical protein
96	 61.56	-1	104805..105215	-	136	15607237	-	Rv0095c	-	hypothetical protein
97	 65.09	0	105324..106715	+	463	57116689	PPE1	Rv0096	-	PPE family protein
98	 58.85	-1	106734..107603	+	289	15607239	-	Rv0097	-	oxidoreductase
99	 59.06	-1	107600..108151	+	183	15607240	-	Rv0098	-	hypothetical protein
100	 62.66	0	108156..109778	+	540	15607241	fadD10	Rv0099	-	acyl-CoA synthetase
65.47	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.