IslandPath Analysis: Staphylococcus aureus subsp. aureus str. Newman



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.06   STD DEV: 3.31
Staphylococcus aureus subsp. aureus str. Newman, complete genome - 1..2878897
2614 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.89	0	517..1878	+	453	151220213	dnaA	NWMN_0001	-	chromosomal replication initiation protein
2	 32.80	0	2163..3296	+	377	151220214	dnaN	NWMN_0002	-	DNA polymerase III subunit beta
3	 33.78	0	3919..5031	+	370	151220215	recF	NWMN_0003	-	recombination protein F
4	 37.00	+1	5041..6975	+	644	151220216	gyrB	NWMN_0004	-	DNA gyrase B subunit
5	 36.95	+1	6994..9675	+	893	151220217	gyrA	NWMN_0005	-	DNA gyrase A subunit
6	 37.06	+1	9762..10592	-	276	151220218	-	NWMN_0006	-	hypothetical protein
7	 36.90	+1	10900..12414	+	504	151220219	hutH	NWMN_0007	-	histidine ammonia-lyase
8	 34.58	0	12793..14079	+	428	151220220	serS	NWMN_0008	-	seryl-tRNA synthetase
9	 36.93	+1	14729..15424	+	231	151220221	-	NWMN_0009	-	hypothetical protein
10	 34.24	0	15421..15750	+	109	151220222	-	NWMN_0010	-	hypothetical protein
11	 35.71	0	16113..17081	+	322	151220223	-	NWMN_0011	-	hypothetical protein
12	 32.32	0	17324..18310	+	328	151220224	-	NWMN_0012	-	hypothetical protein
13	 35.77	0	18325..20292	+	655	151220225	-	NWMN_0013	-	hypothetical protein
14	 31.77	0	20289..20735	+	148	151220226	rplI	NWMN_0014	-	50S ribosomal protein L9
15	 38.33	+1	20767..22167	+	466	151220227	dnaB	NWMN_0015	-	replicative DNA helicase
16	 36.37	0	22445..23728	+	427	151220228	purA	NWMN_0016	-	adenylosuccinate synthetase
17	 36.44	+1	24926..25633	+	235	151220229	vicR	NWMN_0017	-	response regulator protein
18	 34.81	0	25646..27472	+	608	151220230	vicK	NWMN_0018	-	sensor kinase protein
19	 35.02	0	27438..28799	+	453	151220231	-	NWMN_0019	-	hypothetical protein
20	 32.45	0	28800..29588	+	262	151220232	-	NWMN_0020	-	hypothetical protein
21	 35.83	0	29978..30778	+	266	151220233	-	NWMN_0021	-	metallo-beta-lactamase superfamily protein
22	 38.68	+1	31006..33324	+	772	151220234	-	NWMN_0022	-	hypothetical protein
23	 39.79	+2	33692..34171	+	159	151220235	orfX	NWMN_0023	-	cassette chromosome attachment site ORF
24	 25.54	-2	34713..36458	+	581	151220236	-	NWMN_0024	-	hypothetical protein
25	 35.32	0	36552..37004	-	150	151220237	-	NWMN_0025	-	hypothetical protein
26	 31.61	0	37219..37974	-	251	151220238	-	NWMN_0026	-	hypothetical protein
27	 31.84	0	38371..39438	+	355	151220239	-	NWMN_0027	-	hypothetical protein
28	 33.56	0	39469..40803	+	444	151220240	-	NWMN_0028	-	metallo-beta-lactamase superfamily protein
29	 32.59	0	40813..42015	+	400	151220241	-	NWMN_0029	-	hypothetical protein
30	 38.91	+1	42682..43668	-	328	151220242	-	NWMN_0030	-	hypothetical protein
31	 31.65	0	44229..44525	+	98	151220243	-	NWMN_0031	-	hypothetical protein
32	 28.99	-1	44597..45817	-	406	151220244	-	NWMN_0032	-	hypothetical protein
33	 30.36	0	45582..45884	+	100	151220245	-	NWMN_0033	-	hypothetical protein
34	 30.86	0	45810..46295	-	161	151220246	-	NWMN_0034	-	hypothetical protein
35	 27.64	-1	46473..47333	+	286	151220247	-	NWMN_0035	-	LysR family regulatory protein
36	 26.22	-2	47688..48221	-	177	151220248	-	NWMN_0036	-	hypothetical protein
37	 26.21	-2	48312..49055	+	247	151220249	-	NWMN_0037	-	hypothetical protein
38	 30.18	0	49489..50091	+	200	151220250	-	NWMN_0038	-	hypothetical protein
39	 31.34	0	50358..53510	+	1050	151220251	-	NWMN_0039	-	hypothetical protein
40	 32.09	0	53567..54049	+	160	151220252	-	NWMN_0040	-	hypothetical protein
41	 33.33	0	54254..55240	+	328	151220253	-	NWMN_0041	-	hypothetical protein
42	 29.57	-1	55461..56231	+	256	151220254	-	NWMN_0042	-	hypothetical protein
43	 28.15	-1	56283..57053	+	256	151220255	-	NWMN_0043	-	hypothetical protein
44	 29.96	0	57117..57887	+	256	151220256	-	NWMN_0044	-	hypothetical protein
45	 31.12	0	57954..58721	+	255	151220257	-	NWMN_0045	-	hypothetical protein
46	 33.69	0	58815..61052	+	745	151220258	-	NWMN_0046	-	hypothetical protein
47	 37.12	+1	61194..62381	+	395	151220259	-	NWMN_0047	-	hypothetical protein
48	 36.79	+1	62383..63771	+	462	151220260	-	NWMN_0048	-	hypothetical protein
49	 36.09	0	64264..65931	-	555	151220261	-	NWMN_0049	-	hypothetical protein
50	 35.53	0	66251..68026	-	591	151220262	-	NWMN_0050	-	67 kDa Myosin-crossreactive streptococcal antigen-like protein
51	 30.81	0	68200..69072	-	290	151220263	-	NWMN_0051	-	hypothetical protein
52	 29.04	-1	69185..70582	+	465	151220264	-	NWMN_0052	-	transcriptional regulator GntR family protein
53	 29.96	0	70772..71245	+	157	151220265	-	NWMN_0053	-	hypothetical protein
54	 34.59	0	71507..73099	+	530	151220266	lctP	NWMN_0054	-	L-lactate permease
55	 37.94	+1	73428..74990	-	520	151220267	spa	NWMN_0055	-	immunoglobulin G binding protein A precursor (protein A)
56	 27.67	-1	75375..76151	-	258	151220268	sarH1	NWMN_0056	-	accessory regulator A-like protein
57	 36.74	+1	76496..77494	-	332	151220269	sirC	NWMN_0057	-	siderophore compound ABC transporter permease protein SirC
58	 38.55	+1	77491..78486	-	331	151220270	sirB	NWMN_0058	-	siderophore compound ABC transporter permease protein SirB
59	 32.23	0	78502..79494	-	330	151220271	sirA	NWMN_0059	-	siderophore compound ABC transporter binding protein
60	 36.80	+1	79725..80705	+	326	151220272	sbnA	NWMN_0060	-	O-Acetyl serine sulfhydrylase
61	 37.39	+1	80702..81712	+	336	151220273	sbnB	NWMN_0061	-	ornithine cyclodeaminase
62	 35.90	0	81733..83487	+	584	151220274	sbnC	NWMN_0062	-	siderophore biosynthesis IucC family protein
63	 39.14	+1	83480..84736	+	418	151220275	sbnD	NWMN_0063	-	membrane transporter protein
64	 36.61	+1	84726..86462	+	578	151220276	sbnE	NWMN_0064	-	siderophore biosynthesis IucA family protein
65	 35.93	0	86371..88221	+	616	151220277	sbnF	NWMN_0065	-	siderophore biosynthesis IucC family protein
66	 40.13	+2	88193..88972	+	259	151220278	sbnG	NWMN_0066	-	2-dehydro-3-deoxyglucarate aldolase
67	 36.66	+1	88972..90174	+	400	151220279	sbnH	NWMN_0067	-	diaminopimelate decarboxylase
68	 36.73	+1	90178..90942	+	254	151220280	sbnI	NWMN_0068	-	hypothetical protein
69	 29.66	-1	91138..91545	+	135	151220281	-	NWMN_0069	-	hypothetical protein
70	 31.58	0	91595..92221	+	208	151220282	-	NWMN_0070	-	hypothetical protein
71	 40.93	+2	92433..93209	+	258	151220283	-	NWMN_0071	-	acetoin reductase
72	 31.77	0	93566..94525	+	319	151220284	-	NWMN_0072	-	NAD dependent epimerase/dehydratase family protein
73	 34.78	0	94488..95180	+	230	151220285	-	NWMN_0073	-	hypothetical protein
74	 33.25	0	95390..96556	+	388	151220286	-	NWMN_0074	-	glycosyl transferase, group 1 family protein
75	 30.51	0	96537..97775	+	412	151220287	-	NWMN_0075	-	hypothetical protein
76	 31.38	0	97765..99195	+	476	151220288	-	NWMN_0076	-	polysaccharide extrusion protein
77	 35.67	0	99463..100062	+	199	151220289	sodM	NWMN_0077	-	superoxide dismutase
78	 35.40	0	100430..101155	+	241	151220290	-	NWMN_0078	-	hypothetical protein
79	 35.71	0	101347..102102	-	251	151220291	-	NWMN_0079	-	hypothetical protein
80	 37.57	+1	102338..103045	+	235	151220292	pnp	NWMN_0080	-	purine nucleoside phosphorylase
81	 32.00	0	103052..104404	+	450	151220293	-	NWMN_0081	-	hypothetical protein
82	 39.97	+2	104485..105147	+	220	151220294	dra	NWMN_0082	-	deoxyribose-phosphate aldolase
83	 36.81	+1	105175..106353	+	392	151220295	-	NWMN_0083	-	phosphopentomutase
84	 37.01	+1	106484..107299	-	271	151220296	-	NWMN_0084	-	phosphonates ABC transporter permease
85	 34.33	0	107296..108096	-	266	151220297	-	NWMN_0085	-	phosphonates ABC transporter permease
86	 34.88	0	108098..108871	-	257	151220298	-	NWMN_0086	-	ABC transport ATP-binding protein
87	 36.83	+1	110270..111814	+	514	151220299	-	NWMN_0087	-	hypothetical protein
88	 36.45	+1	111859..113400	+	513	151220300	-	NWMN_0088	-	hypothetical protein
89	 22.55	-2	113484..113687	+	67	151220301	-	NWMN_0089	-	hypothetical protein
90	 30.40	0	114000..114545	+	181	151220302	-	NWMN_0090	-	hypothetical protein
91	 27.15	-1	114530..114820	+	96	151220303	-	NWMN_0091	-	hypothetical protein
92	 21.30	-2	114976..115191	+	71	151220304	-	NWMN_0092	-	hypothetical protein
93	 26.58	-1	115844..116065	+	73	151220305	-	NWMN_0093	-	truncated IS200 transposase family protein
94	 36.13	0	116515..119124	+	869	151220306	adhE	NWMN_0094	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
95	 29.90	0	119469..120137	+	222	151220307	capA	NWMN_0095	-	capsular polysaccharide synthesis enzyme CapA
96	 33.62	0	120144..120839	+	231	151220308	capB	NWMN_0096	-	capsular polysaccharide synthesis enzyme CapB
97	 31.76	0	120842..121606	+	254	151220309	capC	NWMN_0097	-	capsular polysaccharide synthesis enzyme CapC
98	 35.08	0	121614..123449	+	611	151220310	capD	NWMN_0098	-	polysaccharide biosynthesis protein CapD
99	 34.01	0	123439..124467	+	342	151220311	capE	NWMN_0099	-	capsular polysaccharide biosynthesis protein CapE
100	 34.77	0	124480..125589	+	369	151220312	capF	NWMN_0100	-	capsular polysaccharide synthesis enzyme CapF
33.06	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.