IslandPath Analysis: Halorhodospira halophila SL1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.91   STD DEV: 4.09
Halorhodospira halophila SL1, complete genome - 1..2678452
2407 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 69.05	0	35..664	-	209	121996811	-	Hhal_0001	-	methyltransferase GidB
2	 70.14	0	654..2555	-	633	121996812	-	Hhal_0002	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3	 67.36	0	2616..3773	+	385	121996813	-	Hhal_0003	-	beta-ketoacyl synthase
4	 66.67	0	3787..4653	+	288	121996814	-	Hhal_0004	-	aminotransferase, class IV
5	 67.48	0	4692..5675	+	327	121996815	-	Hhal_0005	-	aminodeoxychorismate lyase
6	 67.75	0	5672..6319	+	215	121996816	-	Hhal_0006	-	dTMP kinase
7	 72.06	+1	6316..7371	+	351	121996817	-	Hhal_0007	-	DNA polymerase III, delta prime subunit
8	 67.73	0	7347..8477	-	376	121996818	-	Hhal_0008	-	aminotransferase, class V
9	 64.73	0	8712..9485	-	257	121996819	-	Hhal_0009	-	short-chain dehydrogenase/reductase SDR
10	 68.10	0	9578..10555	-	325	121996820	-	Hhal_0010	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
11	 66.03	0	10658..11284	+	208	121996821	-	Hhal_0011	-	molybdopterin-guanine dinucleotide biosynthesis protein B
12	 64.99	0	11435..13339	+	634	121996822	-	Hhal_0012	-	AMP-dependent synthetase and ligase
13	 67.07	0	13400..14152	-	250	121996823	-	Hhal_0013	-	hypothetical protein
14	 68.50	0	14225..15424	+	399	121996824	-	Hhal_0014	-	TraB family protein
15	 62.81	-1	15439..16992	-	517	121996825	-	Hhal_0015	-	peptide chain release factor 3
16	 62.02	-1	17214..17708	+	164	121996826	-	Hhal_0016	-	hypothetical protein
17	 60.57	-1	17877..18401	+	174	121996827	-	Hhal_0017	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
18	 65.02	0	18440..19657	+	405	121996828	-	Hhal_0018	-	beta-ketoacyl synthase
19	 62.15	-1	19722..21116	+	464	121996829	-	Hhal_0019	-	oxygen-independent coproporphyrinogen III oxidase
20	 63.53	-1	21085..22296	+	403	121996830	-	Hhal_0020	-	hypothetical protein
21	 65.40	0	22730..23281	-	183	121996831	-	Hhal_0021	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
22	 64.44	0	23291..25132	-	613	121996832	-	Hhal_0022	-	excinuclease ABC, C subunit
23	 63.90	0	25340..25990	-	216	121996833	-	Hhal_0023	-	two component LuxR family transcriptional regulator
24	 64.65	0	26080..26922	+	280	121996834	-	Hhal_0024	-	pyrimidine reductase, riboflavin biosynthesis, RibD
25	 67.74	0	26958..28355	-	465	121996835	-	Hhal_0025	-	fumarate lyase
26	 66.30	0	28460..29827	+	455	121996836	-	Hhal_0026	-	adenylosuccinate lyase
27	 67.91	0	29899..30540	-	213	121996837	-	Hhal_0027	-	NUDIX hydrolase
28	 68.35	0	30558..31862	-	434	121996838	rumA	Hhal_0028	-	23S rRNA 5-methyluridine methyltransferase
29	 66.41	0	31870..32643	-	257	121996839	-	Hhal_0029	-	hypothetical protein
30	 69.29	0	32662..33042	-	126	121996840	-	Hhal_0030	-	holo-acyl-carrier-protein synthase
31	 67.89	0	33039..33773	-	244	121996841	-	Hhal_0031	-	pyridoxal phosphate biosynthetic protein PdxJ
32	 68.79	0	33797..34501	-	234	121996842	-	Hhal_0032	-	DNA repair protein RecO
33	 64.38	0	34498..35415	-	305	121996843	-	Hhal_0033	-	GTP-binding protein Era
34	 65.96	0	35408..36112	-	234	121996844	-	Hhal_0034	-	ribonuclease III
35	 64.30	0	36117..36878	-	253	121996845	-	Hhal_0035	-	signal peptidase I
36	 63.17	-1	36888..38687	-	599	121996846	-	Hhal_0036	-	GTP-binding protein LepA
37	 67.41	0	38779..40248	-	489	121996847	-	Hhal_0037	-	protease Do
38	 68.38	0	40313..41302	-	329	121996848	-	Hhal_0038	-	sigma E regulatory protein, MucB/RseB
39	 70.78	0	41289..41969	-	226	121996849	-	Hhal_0039	-	anti sigma-E protein, RseA
40	 62.74	-1	41999..42583	-	194	121996850	-	Hhal_0040	-	RNA polymerase sigma factor RpoE
41	 67.67	0	42714..44405	+	563	121996851	-	Hhal_0041	-	L-aspartate oxidase
42	 64.75	0	44798..45058	-	86	121996852	-	Hhal_0042	-	hypothetical protein
43	 62.61	-1	45076..45864	-	262	121996853	sdhB	Hhal_0043	-	succinate dehydrogenase iron-sulfur subunit
44	 65.72	0	45884..47674	-	596	121996854	sdhA	Hhal_0044	-	succinate dehydrogenase flavoprotein subunit
45	 65.36	0	47682..48065	-	127	121996855	-	Hhal_0045	-	succinate dehydrogenase, cytochrome b subunit
46	 63.85	0	48068..48457	-	129	121996856	-	Hhal_0046	-	succinate dehydrogenase, cytochrome b subunit
47	 72.10	+1	48718..49674	+	318	121996857	-	Hhal_0047	-	glycine cleavage T protein (aminomethyl transferase)
48	 65.32	0	49687..51174	-	495	121996858	-	Hhal_0048	-	lysyl-tRNA synthetase
49	 65.18	0	51210..52085	-	291	121996859	-	Hhal_0049	-	peptide chain release factor 2
50	 67.93	0	52475..53740	+	421	121996860	-	Hhal_0050	-	adenosylhomocysteinase
51	 65.06	0	53839..54336	+	165	121996861	-	Hhal_0051	-	hypothetical protein
52	 69.36	0	54365..57076	-	903	121996862	-	Hhal_0052	-	AMP-dependent synthetase and ligase
53	 65.89	0	57173..61033	+	1286	121996863	-	Hhal_0053	-	FAD linked oxidase domain-containing protein
54	 64.88	0	61061..61396	+	111	121996864	-	Hhal_0054	-	hypothetical protein
55	 67.53	0	61435..62016	+	193	121996865	-	Hhal_0055	-	NnrU family protein
56	 70.37	0	62060..63517	-	485	121996866	-	Hhal_0056	-	Fmu (Sun) domain-containing protein
57	 65.91	0	63692..66202	+	836	121996867	-	Hhal_0057	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
58	 66.85	0	66163..67236	-	357	121996868	-	Hhal_0058	-	diguanylate phosphodiesterase
59	 67.47	0	67406..70006	+	866	121996869	-	Hhal_0059	-	phosphoenolpyruvate synthase
60	 63.93	0	70003..71352	-	449	121996870	-	Hhal_0060	-	glutamate dehydrogenase
61	 62.37	-1	72023..72604	-	193	121996871	-	Hhal_0061	-	RnfA-Nqr electron transport subunit
62	 64.55	0	72594..73253	-	219	121996872	-	Hhal_0062	-	electron transport complex, RnfABCDGE type, E subunit
63	 66.67	0	73253..73945	-	230	121996873	-	Hhal_0063	-	FMN-binding domain-containing protein
64	 66.57	0	73945..74961	-	338	121996874	-	Hhal_0064	-	electron transport complex, RnfABCDGE type, D subunit
65	 66.96	0	74961..76307	-	448	121996875	-	Hhal_0065	-	electron transport complex, RnfABCDGE type, C subunit
66	 66.02	0	76310..81277	-	1655	121996876	-	Hhal_0066	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
67	 64.74	0	81420..82301	-	293	121996877	-	Hhal_0067	-	Fe-S cluster domain-containing protein
68	 69.55	0	82544..84139	+	531	121996878	-	Hhal_0068	-	indolepyruvate ferredoxin oxidoreductase
69	 67.58	0	84136..84681	+	181	121996879	-	Hhal_0069	-	pyruvate ferredoxin/flavodoxin oxidoreductase
70	 66.97	0	84693..86030	+	445	121996880	-	Hhal_0070	-	phenylacetate--CoA ligase
71	 65.53	0	86033..86470	+	145	121996881	-	Hhal_0071	-	amino acid-binding ACT domain-containing protein
72	 68.91	0	86491..87513	-	340	121996882	-	Hhal_0072	-	molybdenum cofactor biosynthesis protein A
73	 66.07	0	87562..88062	-	166	121996883	-	Hhal_0073	-	disulphide bond formation protein DsbB
74	 66.09	0	88297..88644	+	115	121996884	-	Hhal_0074	-	alkylhydroperoxidase
75	 66.82	0	88759..89415	+	218	121996885	-	Hhal_0075	-	rhodanese domain-containing protein
76	 65.31	0	89423..89863	-	146	121996886	-	Hhal_0076	-	choline/carnitine/betaine transporter
77	 67.22	0	89860..91500	-	546	121996887	-	Hhal_0077	-	choline/carnitine/betaine transporter
78	 67.59	0	91497..93020	-	507	121996888	-	Hhal_0078	-	glycerol kinase
79	 70.70	0	93202..94839	+	545	121996889	-	Hhal_0079	-	FAD dependent oxidoreductase
80	 72.22	+1	94836..95159	-	107	121996890	-	Hhal_0080	-	hypothetical protein
81	 65.05	0	95269..95949	-	226	121996891	-	Hhal_0081	-	phosphate uptake regulator, PhoU
82	 66.50	0	95971..97173	-	400	121996892	-	Hhal_0082	-	Na+/Pi-cotransporter
83	 66.21	0	97322..97759	-	145	121996893	-	Hhal_0083	-	hypothetical protein
84	 67.47	0	97972..99594	+	540	121996894	-	Hhal_0084	-	hypothetical protein
85	 63.94	0	99698..100210	+	170	121996895	-	Hhal_0085	-	periplasmic protein thiol--disulphide oxidoreductase DsbE
86	 69.26	0	100258..101337	-	359	121996896	-	Hhal_0086	-	anthranilate phosphoribosyltransferase
87	 69.12	0	101376..102353	-	325	121996897	-	Hhal_0087	-	alcohol dehydrogenase
88	 69.22	0	102396..103454	-	352	121996898	-	Hhal_0088	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
89	 63.12	-1	103596..104891	-	431	121996899	-	Hhal_0089	-	hypothetical protein
90	 68.49	0	105086..105304	+	72	121996900	-	Hhal_0090	-	hypothetical protein
91	 65.74	0	105624..106055	+	143	121996901	-	Hhal_0091	-	protein tyrosine phosphatase
92	 64.10	0	106110..106850	-	246	121996902	-	Hhal_0092	-	phosphate uptake regulator, PhoU
93	 63.98	0	106862..107716	-	284	121996903	-	Hhal_0093	-	phosphate ABC transporter, ATPase subunit
94	 66.49	0	107730..109406	-	558	121996904	-	Hhal_0094	-	phosphate ABC transporter, inner membrane subunit PstA
95	 66.92	0	109426..111753	-	775	121996905	-	Hhal_0095	-	binding-protein-dependent transport systems inner membrane component
96	 64.08	0	111948..112913	-	321	121996906	-	Hhal_0096	-	phosphate binding protein
97	 68.61	0	112981..114321	-	446	121996907	-	Hhal_0097	-	PAS/PAC sensor signal transduction histidine kinase
98	 66.38	0	114343..115032	-	229	121996908	-	Hhal_0098	-	two component transcriptional regulator
99	 69.07	0	116586..117209	+	207	121996909	-	Hhal_0100	-	hypothetical protein
100	 64.97	0	117288..117758	+	156	121996910	-	Hhal_0101	-	redoxin domain-containing protein
67.91	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.