IslandPath Analysis: Pseudoalteromonas haloplanktis TAC125



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.89   STD DEV: 3.43
Pseudoalteromonas haloplanktis TAC125 chromosome II, complete sequence - 1..635328
546 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.88	0	160..1398	+	412	77361924	-	PSHAb0001	-	putative ATPase involved in chromosome partitioning (parA family protein)
2	 41.64	0	1414..2376	+	320	77361925	-	PSHAb0002	-	putative transcriptional regulator for chromosome partitioning (parB family protein)
3	 36.86	0	2802..5948	+	1048	77361926	-	PSHAb0003	-	DNA helicase
4	 43.08	0	6786..8252	+	488	77361927	-	PSHAb0004	-	DNA recombination protein rmuC
5	 42.12	0	8452..10785	+	777	77361928	-	PSHAb0005	-	dipeptidyl-peptidase IV
6	 40.72	0	10912..11439	-	175	77361929	-	PSHAb0006	-	putative metal-binding protein
7	 39.47	0	11450..11938	-	162	77361930	-	PSHAb0007	-	putative orphan protein
8	 38.54	0	11961..12863	-	300	77361931	-	PSHAb0008	-	putative copper export protein
9	 39.51	0	12875..13279	-	134	77361932	-	PSHAb0009	-	putative copper resistance (CopC-like)
10	 42.92	0	13302..14177	-	291	77361933	copB	PSHAb0010	-	copper resistance protein B [precursor] (CPx-type copper ATPase)
11	 44.37	+1	14174..16012	-	612	77361934	copA	PSHAb0011	-	copper resistance protein A (CPx-type copper ATPase); putative laccase
12	 42.94	0	16187..16873	+	228	77361935	cusR	PSHAb0012	-	transcriptional activator of copper resistance (two-component regulatory system with CusS)
13	 39.94	0	16896..18257	+	453	77361936	cusS	PSHAb0013	-	sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions
14	 41.12	0	18444..19355	-	303	77361937	-	PSHAb0014	-	LysR family transcriptional regulator
15	 41.64	0	19630..20532	-	300	77361938	-	PSHAb0015	-	LysR family transcriptional regulator
16	 35.88	-1	20725..21156	+	143	77361939	-	PSHAb0016	-	hypothetical protein
17	 43.11	0	21484..22158	+	224	77361940	-	PSHAb0017	-	putative glutathione S-transferase family protein
18	 44.50	+1	22227..23354	+	375	77361941	-	PSHAb0018	-	putative Zn-dependent enzyme
19	 38.13	0	23506..24297	-	263	77361942	-	PSHAb0019	-	putative dinucleotide-utilizing enzyme
20	 38.37	0	24357..25229	-	290	77361943	-	PSHAb0020	-	hypothetical protein
21	 32.12	-2	26105..28075	+	656	77361944	-	PSHAb0021	-	putative orphan protein
22	 35.03	-1	28272..28919	-	215	77361945	-	PSHAb0022	-	putative orphan protein
23	 45.32	+1	29277..30794	-	505	77361946	-	PSHAb0023	-	hypothetical protein
24	 43.33	+1	31399..32268	+	289	77361947	-	PSHAb0024	-	putative metal-dependent protein hydrolase
25	 40.00	0	32390..32839	-	149	77361948	-	PSHAb0025	-	putative orphan protein
26	 37.32	0	32988..33263	-	91	77361949	-	PSHAb0026	-	putative transposase IS200-like
27	 37.26	0	33532..34575	+	347	77361950	-	PSHAb0027	-	Peyer's patch-specific virulence factor GipA (transposase)
28	 40.68	0	34766..35554	-	262	77361951	-	PSHAb0028	-	LysR family transcriptional regulator
29	 39.72	0	35740..36240	+	166	77361952	-	PSHAb0029	-	putative enzyme protein
30	 39.84	0	36438..37298	-	286	77361953	-	PSHAb0030	-	putative AraC-like transcription regulator
31	 37.55	0	37447..37707	+	86	77361954	grxC	PSHAb0031	-	glutaredoxin 3 (Grx3)
32	 41.67	0	37762..38277	+	171	77361955	-	PSHAb0032	-	hypothetical protein
33	 40.74	0	38578..39198	+	206	77361956	-	PSHAb0033	-	hypothetical protein
34	 36.08	-1	39191..40099	+	302	77361957	-	PSHAb0034	-	putative spermine/spermidine synthase protein
35	 39.63	0	40331..40822	+	163	77361958	-	PSHAb0035	-	MarR family transcriptional regulator
36	 42.98	0	40812..41879	+	355	77361959	-	PSHAb0036	-	putative efflux pump or secretion protein
37	 41.33	0	41890..42939	+	349	77361960	-	PSHAb0037	-	hypothetical protein
38	 41.30	0	43165..43578	-	137	77361961	-	PSHAb0038	-	hypothetical protein
39	 40.93	0	43759..47814	+	1351	77361962	-	PSHAb0039	-	helicase domain-containing protein
40	 43.78	+1	48095..48697	-	200	77361963	-	PSHAb0040	-	putative uracil-DNA glycosylase family protein
41	 41.18	0	48824..49180	-	118	77361964	-	PSHAb0041	-	putative enzyme protein
42	 35.88	-1	49385..49738	+	117	77361965	-	PSHAb0042	-	hypothetical protein
43	 40.14	0	49735..51336	+	533	77361966	-	PSHAb0043	-	putative uncharacterized iron-regulated membrane protein
44	 35.05	-1	51833..52357	-	174	77361967	blc	PSHAb0044	-	outer membrane lipoprotein (lipocalin)
45	 46.49	+1	52477..52932	+	151	77361968	-	PSHAb0045	-	hypothetical protein
46	 40.07	0	52934..53497	+	187	77361969	-	PSHAb0046	-	putative orphan protein
47	 40.20	0	53537..53929	+	130	77361970	-	PSHAb0047	-	hypothetical protein
48	 41.87	0	54305..54550	+	81	77361971	-	PSHAb0049	-	putative orphan protein
49	 43.05	0	54614..55591	+	325	77361972	-	PSHAb0050	-	hypothetical protein
50	 38.45	0	56000..56644	-	214	77361973	-	PSHAb0051	-	putative amino acid efflux protein
51	 40.84	0	56749..57201	+	150	77361974	-	PSHAb0052	-	AsnC family transcriptional regulator
52	 40.30	0	57305..57964	-	219	77361975	-	PSHAb0053	-	putative orphan protein
53	 40.64	0	58038..61691	-	1217	77361976	sbcC	PSHAb0054	-	exonuclease sbcCD subunit C
54	 42.79	0	61688..62935	-	415	77361977	sbcD	PSHAb0055	-	exonuclease sbcCD subunit D
55	 35.39	-1	63028..63270	-	80	77361978	-	PSHAb0056	-	hypothetical protein
56	 41.41	0	63742..66192	+	816	77361979	-	PSHAb0057	-	putative Zn-dependent aminopeptidase
57	 37.78	0	66192..66686	+	164	77361980	-	PSHAb0058	-	putative orphan protein
58	 39.38	0	67117..67728	+	203	77361981	-	PSHAb0059	-	putative hydrolase/phosphatase protein
59	 39.12	0	67860..68585	+	241	77361982	-	PSHAb0060	-	hypothetical protein
60	 43.13	0	68810..70993	-	727	77361983	glcB	PSHAb0061	-	malate synthase G
61	 43.01	0	71232..72833	+	533	77361984	aceA	PSHAb0062	-	isocitrate lyase
62	 42.40	0	73931..75949	-	672	77361985	-	PSHAb0063	-	putative peptidase
63	 42.39	0	76102..76830	-	242	77361986	-	PSHAb0064	-	hypothetical protein
64	 41.39	0	76842..78641	-	599	77361987	nagZ	PSHAb0065	-	beta-hexosaminidase A
65	 41.73	0	78838..79623	-	261	77361988	hmuV	PSHAb0066	-	putative hemin ABC transport system ATP-binding protein hmuV
66	 40.53	0	79624..80679	-	351	77361989	hmuU	PSHAb0067	-	hemin ABC-transport system permease
67	 39.65	0	80685..81602	-	305	77361990	hmuT	PSHAb0068	-	putative hemin-binding periplasmic ABC-transport system protein
68	 36.42	-1	81613..82422	+	269	77361991	-	PSHAb0069	-	TonB domain-containing protein
69	 38.22	0	82437..82988	+	183	77361992	-	PSHAb0070	-	biopolymer transport protein
70	 37.20	0	82981..83394	+	137	77361993	-	PSHAb0071	-	biopolymer transport protein
71	 39.66	0	83541..85628	+	695	77361994	hmuR	PSHAb0072	-	putative hemin receptor protein HmuR
72	 38.08	0	85674..86726	+	350	77361995	hmuS	PSHAb0073	-	putative hemin transport protein hmuS
73	 37.08	0	87081..87320	+	79	77361996	-	PSHAb0074	-	hypothetical protein
74	 42.28	0	87563..87886	+	107	77361997	-	PSHAb0075	-	putative orphan protein
75	 47.96	+2	87906..89081	+	391	77361998	-	PSHAb0076	-	hypothetical protein
76	 38.29	0	89124..89648	+	174	77361999	-	PSHAb0077	-	GGDEF domain-containing protein
77	 40.00	0	89904..90113	+	69	77362000	cspX	PSHAb0078	-	cold shock protein
78	 41.91	0	91100..92323	-	407	77362001	nupX	PSHAb0079	-	putative Na+ dependent nucleoside transporter
79	 38.10	0	92341..92970	-	209	77362002	udk	PSHAb0080	-	uridine kinase
80	 43.51	+1	93162..94379	+	405	77362003	deoB	PSHAb0081	-	phosphopentomutase
81	 41.45	0	94393..95094	+	233	77362004	deoD	PSHAb0082	-	purine nucleoside phosphorylase (inosine phosphorylase) (PNP)
82	 44.09	+1	95741..96484	+	247	77362005	fpr	PSHAb0083	-	ferredoxin--NADP reductase
83	 36.84	0	96699..97439	+	246	77362006	-	PSHAb0084	-	hypothetical protein
84	 40.19	0	97467..97787	+	106	77362007	-	PSHAb0085	-	putative orphan protein
85	 39.26	0	97777..98670	-	297	77362008	-	PSHAb0086	-	TPR repeat-containing protein
86	 42.32	0	99429..101030	-	533	77362009	-	PSHAb0087	-	putative ATP-binding cassette (ABC) transporter
87	 33.33	-1	101629..103221	+	530	77362010	-	PSHAb0089	-	hypothetical protein
88	 35.24	-1	103223..104533	+	436	77362011	-	PSHAb0090	-	putative orphan protein
89	 37.42	0	104514..109577	+	1687	77362012	-	PSHAb0091	-	cell divisionFtsK/SpoIIIE domain-containing protein
90	 33.04	-2	109602..111299	+	565	77362013	-	PSHAb0092	-	acetate/butyrate kinase domain-containing protein
91	 32.30	-2	111331..111717	+	128	77362014	-	PSHAb0093	-	putative orphan protein
92	 32.99	-2	111838..112701	-	287	77362015	-	PSHAb0094	-	putative orphan protein
93	 40.59	0	112702..113073	-	123	77362016	-	PSHAb0095	-	hypothetical protein
94	 37.06	0	113073..115031	-	652	77362017	-	PSHAb0096	-	putative ABC transporter ATP-binding protein
95	 39.45	0	115021..116688	-	555	77362018	-	PSHAb0097	-	hypothetical protein
96	 35.35	-1	116678..117769	-	363	77362019	-	PSHAb0098	-	thiol (cysteine) protease domain-containing protein
97	 37.68	0	117905..119032	+	375	77362020	iscS	PSHAb0099	-	cysteine desulfurase
98	 38.01	0	119440..120444	-	334	77362021	-	PSHAb0100	-	putative orphan protein
99	 37.09	0	120752..121150	+	132	77362022	-	PSHAb0101	-	hypothetical protein
100	 35.44	-1	121188..122090	+	300	77362023	-	PSHAb0102	-	hypothetical protein
39.89	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.