IslandPath Analysis: Synechococcus elongatus PCC 7942



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.84   STD DEV: 4.21
Synechococcus elongatus PCC 7942, complete genome - 1..2695903
2612 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 57.03	0	65..1237	+	390	81298812	-	Synpcc7942_0001	-	DNA polymerase III subunit beta
2	 58.88	0	1262..2134	+	290	81298813	-	Synpcc7942_0002	-	hypothetical protein
3	 59.73	0	2178..4511	+	777	81298814	-	Synpcc7942_0003	-	phosphoribosylformylglycinamidine synthase II
4	 58.30	0	4596..6077	+	493	81298815	-	Synpcc7942_0004	-	amidophosphoribosyltransferase
5	 56.20	0	6111..7706	-	531	81298816	-	Synpcc7942_0005	-	hypothetical protein
6	 56.76	0	7779..8192	-	137	81298817	-	Synpcc7942_0006	-	hypothetical protein
7	 60.68	+1	8189..8539	-	116	81298818	-	Synpcc7942_0007	-	hypothetical protein
8	 59.88	0	8536..8859	-	107	81298819	-	Synpcc7942_0008	-	hypothetical protein
9	 56.69	0	8964..10166	+	400	81298820	-	Synpcc7942_0009	-	argininosuccinate synthase
10	 58.05	0	10252..10878	-	208	81298821	-	Synpcc7942_0010	-	hypothetical protein
11	 53.67	0	10998..11474	-	158	81298822	-	Synpcc7942_0011	-	hypothetical protein
12	 55.25	0	11641..11964	-	107	81298823	rpsF	Synpcc7942_0012	-	30S ribosomal protein S6
13	 52.54	0	12321..13028	+	235	81298824	-	Synpcc7942_0013	-	hypothetical protein
14	 45.22	-2	13067..13411	-	114	81298825	-	Synpcc7942_0014	-	hypothetical protein
15	 54.61	0	13577..14248	-	223	81298826	-	Synpcc7942_0015	-	putative hydroxylase
16	 49.06	-1	15020..15604	+	194	81298827	-	Synpcc7942_0016	-	hypothetical protein
17	 56.21	0	15630..16193	-	187	81298828	-	Synpcc7942_0017	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
18	 58.34	0	16206..18392	-	728	81298829	glyS	Synpcc7942_0018	-	glycyl-tRNA synthetase subunit beta
19	 57.60	0	18615..20489	+	624	81298830	-	Synpcc7942_0019	-	sulfite reductase subunit beta
20	 59.20	0	20490..21092	+	200	81298831	-	Synpcc7942_0020	-	hypothetical protein
21	 54.39	0	21134..21874	-	246	81298832	-	Synpcc7942_0021	-	cobalt-precorrin-6x reductase
22	 58.29	0	21880..23049	-	389	81298833	-	Synpcc7942_0022	-	hypothetical protein
23	 56.34	0	23057..24121	-	354	81298834	-	Synpcc7942_0023	-	calcium/proton exchanger
24	 58.27	0	24181..25371	-	396	81298835	-	Synpcc7942_0024	-	hypothetical protein
25	 59.58	0	25416..27122	+	568	81298836	-	Synpcc7942_0025	-	hypothetical protein
26	 58.69	0	27082..28059	-	325	81298837	-	Synpcc7942_0026	-	hypothetical protein
27	 59.64	0	28184..29350	+	388	81298838	-	Synpcc7942_0027	-	8-amino-7-oxononanoate synthase
28	 59.34	0	29347..30015	+	222	81298839	-	Synpcc7942_0028	-	hypothetical protein
29	 57.79	0	30012..30833	+	273	81298840	-	Synpcc7942_0029	-	hypothetical protein
30	 57.66	0	30839..31471	+	210	81298841	-	Synpcc7942_0030	-	dethiobiotin synthase
31	 54.98	0	31464..32738	+	424	81298842	-	Synpcc7942_0031	-	aminotransferase
32	 43.22	-2	32849..33202	-	117	81298843	-	Synpcc7942_0032	-	hypothetical protein
33	 38.14	-2	33174..33506	-	110	81298844	-	Synpcc7942_0033	-	hypothetical protein
34	 47.37	-2	33685..33798	+	37	81298845	-	Synpcc7942_0034	-	N-acetylornithine aminotransferase
35	 48.09	-1	34357..35115	-	252	81298846	-	Synpcc7942_0035	-	hypothetical protein
36	 56.62	0	35341..36126	+	261	81298847	-	Synpcc7942_0036	-	hypothetical protein
37	 48.53	-1	36123..36326	-	67	81298848	-	Synpcc7942_0037	-	hypothetical protein
38	 56.39	0	36479..36955	+	158	81298849	-	Synpcc7942_0038	-	mutator MutT protein
39	 56.85	0	37130..38545	+	471	81298850	-	Synpcc7942_0039	-	6-phosphogluconate dehydrogenase
40	 58.73	0	38630..39007	+	125	81298851	-	Synpcc7942_0040	-	dihydroneopterin aldolase dihydroneopterin aldolase
41	 58.47	0	39441..40745	+	434	81298852	-	Synpcc7942_0041	-	transport protein
42	 56.12	0	40855..41091	-	78	81298853	rpmB	Synpcc7942_0042	-	50S ribosomal protein L28
43	 59.02	0	41131..41496	-	121	81298854	-	Synpcc7942_0043	-	hypothetical protein
44	 57.74	0	41495..43477	+	660	81298855	-	Synpcc7942_0044	-	hypothetical protein
45	 52.80	0	43572..44927	+	451	81298856	-	Synpcc7942_0045	-	TPR repeat-containing protein
46	 51.64	0	45164..46507	+	447	81298857	-	Synpcc7942_0046	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
47	 51.29	-1	46515..48881	+	788	81298858	-	Synpcc7942_0047	-	TPR repeat-containing protein
48	 48.05	-1	48927..49361	-	144	81298859	-	Synpcc7942_0048	-	pilin polypeptide PilA-like
49	 46.44	-2	49550..49984	-	144	81298860	-	Synpcc7942_0049	-	pilin polypeptide PilA-like
50	 41.58	-2	50070..52616	+	848	81298861	-	Synpcc7942_0050	-	hypothetical protein
51	 36.17	-2	52606..54507	-	633	81298862	-	Synpcc7942_0051	-	TPR repeat-containing protein
52	 40.08	-2	54512..55030	-	172	81298863	-	Synpcc7942_0052	-	hypothetical protein
53	 34.81	-2	55204..56352	-	382	81298864	-	Synpcc7942_0053	-	hypothetical protein
54	 43.36	-2	56423..57190	-	255	81298865	-	Synpcc7942_0054	-	hypothetical protein
55	 36.26	-2	57223..57906	-	227	81298866	-	Synpcc7942_0055	-	hypothetical protein
56	 42.91	-2	57941..59068	-	375	81298867	-	Synpcc7942_0056	-	perosamine synthetase
57	 48.58	-1	59072..60304	-	410	81298868	-	Synpcc7942_0057	-	putative C-3 methyl transferase
58	 52.75	0	60301..60846	-	181	81298869	-	Synpcc7942_0058	-	dTDP-4-dehydrorhamnose 3,5-epimerase
59	 47.56	-1	60867..61112	-	81	81298870	-	Synpcc7942_0059	-	hypothetical protein
60	 50.18	-1	61091..61369	-	92	81298871	-	Synpcc7942_0060	-	hypothetical protein
61	 54.11	0	61366..62472	-	368	81298872	-	Synpcc7942_0061	-	CDP-glucose 4,6-dehydratase
62	 43.93	-2	62469..63242	-	257	81298873	-	Synpcc7942_0062	-	glucose-1-phosphate cytidylyltransferase
63	 52.38	0	64266..64706	-	146	81298874	-	Synpcc7942_0063	-	dual specificity protein phosphatase
64	 54.17	0	64703..64870	-	55	81298875	-	Synpcc7942_0064	-	hypothetical protein
65	 53.15	0	64987..65541	-	184	81298876	infC	Synpcc7942_0065	-	translation initiation factor IF-3
66	 59.08	0	65658..67172	-	504	81298877	-	Synpcc7942_0066	-	hypothetical protein
67	 58.02	0	67177..67986	-	269	81298878	-	Synpcc7942_0067	-	ABC transporter permease
68	 59.19	0	67991..68980	-	329	81298879	-	Synpcc7942_0068	-	ATPase
69	 59.93	0	69079..69375	+	98	81298880	-	Synpcc7942_0069	-	hypothetical protein
70	 59.18	0	69378..69938	-	186	81298881	-	Synpcc7942_0070	-	hypothetical protein
71	 59.58	0	69940..71139	-	399	81298882	-	Synpcc7942_0071	-	pleiotropic regulatory protein-like
72	 59.48	0	71307..71960	-	217	81298883	-	Synpcc7942_0072	-	hypothetical protein
73	 56.14	0	72000..73196	-	398	81298884	-	Synpcc7942_0073	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
74	 56.50	0	73306..73659	-	117	81298885	-	Synpcc7942_0074	-	hypothetical protein
75	 59.06	0	73775..75088	+	437	81298886	-	Synpcc7942_0075	-	aminopeptidase P
76	 51.44	-1	75091..75852	+	253	81298887	-	Synpcc7942_0076	-	extracellular solute-binding protein
77	 53.77	0	75928..76617	+	229	81298888	-	Synpcc7942_0077	-	XRE family transcriptional regulator
78	 57.11	0	76614..77063	-	149	81298889	-	Synpcc7942_0078	-	hypothetical protein
79	 57.72	0	77138..77584	-	148	81298890	-	Synpcc7942_0079	-	hypothetical protein
80	 58.74	0	77648..78871	-	407	81298891	-	Synpcc7942_0080	-	ABC transporter permease
81	 56.67	0	78987..79196	-	69	81298892	-	Synpcc7942_0081	-	RNA-binding S4
82	 56.89	0	79265..81013	+	582	81298893	-	Synpcc7942_0082	-	ATPase
83	 58.08	0	81023..81220	+	65	81298894	-	Synpcc7942_0083	-	hypothetical protein
84	 59.40	0	81217..81918	+	233	81298895	-	Synpcc7942_0084	-	hypothetical protein
85	 52.55	0	82179..82865	-	228	81298896	-	Synpcc7942_0085	-	HAD family hydrolase
86	 55.92	0	82871..84955	-	694	81298897	-	Synpcc7942_0086	-	isoamylase
87	 57.54	0	84964..86475	-	503	81298898	-	Synpcc7942_0087	-	hypothetical protein
88	 57.95	0	86547..87269	+	240	81298899	-	Synpcc7942_0088	-	hypothetical protein
89	 57.41	0	87881..88615	-	244	81298900	-	Synpcc7942_0089	-	carboxymethylenebutenolidase
90	 56.30	0	88735..89718	+	327	81298901	-	Synpcc7942_0090	-	GntR family transcriptional regulator
91	 60.78	+1	89715..90326	-	203	81298902	-	Synpcc7942_0091	-	hypothetical protein
92	 48.56	-1	90583..90930	-	115	81298903	-	Synpcc7942_0092	-	hypothetical protein
93	 60.19	+1	91029..91676	+	215	81298904	-	Synpcc7942_0093	-	thymidylate kinase
94	 58.23	0	91676..92611	+	311	81298905	-	Synpcc7942_0094	-	DNA polymerase III subunit delta'
95	 57.33	0	92590..93339	-	249	81298906	-	Synpcc7942_0095	-	two component transcriptional regulator
96	 53.26	0	93764..94285	-	173	81298907	-	Synpcc7942_0096	-	hypothetical protein
97	 52.35	0	94375..98166	-	1263	81298908	cobN	Synpcc7942_0097	-	cobaltochelatase
98	 57.98	0	98302..100086	-	594	81298909	-	Synpcc7942_0098	-	pyruvate kinase
99	 59.39	0	100202..100531	+	109	81298910	-	Synpcc7942_0099	-	hypothetical protein
100	 57.12	0	100528..101082	-	184	81298911	-	Synpcc7942_0100	-	hypothetical protein
55.84	MEAN

4.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.