IslandPath Analysis: Pseudomonas aeruginosa PA7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.39   STD DEV: 5.05
Pseudomonas aeruginosa PA7, complete genome - 1..6588339
6286 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.64	0	488..2026	+	512	152989598	dnaA	PSPA7_0001	-	chromosomal replication initiation protein
2	 63.50	0	2055..3158	+	367	152987905	dnaN	PSPA7_0002	-	DNA polymerase III subunit beta
3	 61.89	0	3168..4277	+	369	152985186	recF	PSPA7_0003	-	recombination protein F
4	 63.11	0	4274..6694	+	806	152984068	gyrB	PSPA7_0004	-	DNA gyrase subunit B
5	 66.41	0	7025..7798	-	257	152984031	-	PSPA7_0005	-	acyltransferase
6	 63.96	0	7810..8364	-	184	152987801	-	PSPA7_0006	-	D,D-heptose 1,7-bisphosphate phosphatase
7	 65.20	0	8363..8635	+	90	152989281	-	PSPA7_0007	-	hypothetical protein
8	 67.83	0	8691..10748	-	685	152989471	glyS	PSPA7_0008	-	glycyl-tRNA synthetase subunit beta
9	 64.24	0	10745..11692	-	315	152988775	glyQ	PSPA7_0009	-	glycyl-tRNA synthetase subunit alpha
10	 63.59	0	11797..12348	+	183	152986267	tag	PSPA7_0010	-	DNA-3-methyladenine glycosidase I
11	 62.39	0	12625..13512	+	295	152985637	-	PSPA7_0011	-	lipid A biosynthesis lauroyl acyltransferase
12	 59.93	-1	13589..13855	+	88	152987598	-	PSPA7_0012	-	hypothetical protein
13	 62.40	0	13999..14655	+	218	152986844	-	PSPA7_0013	-	hypothetical protein
14	 65.56	0	14713..14982	-	89	152987489	-	PSPA7_0014	-	hypothetical protein
15	 66.67	0	15288..15602	-	104	152985082	-	PSPA7_0015	-	TPR domain-containing protein
16	 66.05	0	15657..17108	-	483	152986997	trkH2	PSPA7_0016	-	potassium uptake protein TrkH
17	 65.94	0	17245..18618	-	457	152988900	trkA	PSPA7_0017	-	potassium transporter peripheral membrane component
18	 70.96	0	18646..19950	-	434	152985582	sun	PSPA7_0018	-	ribosomal RNA small subunit methyltransferase B
19	 71.92	+1	19947..20879	-	310	152989066	fmt	PSPA7_0019	-	methionyl-tRNA formyltransferase
20	 62.13	0	20944..21450	-	168	152988653	def2	PSPA7_0020	-	peptide deformylase
21	 66.96	0	21589..22614	+	341	152985066	-	PSPA7_0021	-	hypothetical protein
22	 74.66	+1	22749..23837	+	362	152989517	-	PSPA7_0022	-	protein smf (DNA-processing chain A)
23	 70.25	0	23877..24434	+	185	152988004	-	PSPA7_0023	-	hypothetical protein
24	 68.20	0	24445..25422	-	325	152987374	qor	PSPA7_0024	-	quinone oxidoreductase
25	 68.19	0	25614..26531	+	305	152983988	hemF	PSPA7_0025	-	coproporphyrinogen III oxidase
26	 72.36	+1	26589..27413	+	274	152984179	aroE	PSPA7_0026	-	shikimate 5-dehydrogenase
27	 66.16	0	27525..28511	+	328	152986177	-	PSPA7_0027	-	phospholipase C, PlcB
28	 69.93	0	28492..29778	+	428	152988040	-	PSPA7_0028	-	putative lipoprotein
29	 74.13	+1	29775..30377	+	200	152983800	-	PSPA7_0029	-	hypothetical protein
30	 70.59	0	30381..31934	-	517	152988087	-	PSPA7_0030	-	putative sulfate transporter
31	 69.59	0	31939..32862	-	307	152988567	-	PSPA7_0031	-	hypothetical protein
32	 68.65	0	32880..34391	-	503	152989262	betC	PSPA7_0032	-	choline sulfatase
33	 70.44	0	34520..35419	+	299	152988427	-	PSPA7_0033	-	putative transcriptional regulator
34	 67.20	0	35430..35807	+	125	152986299	-	PSPA7_0035	-	dopa 4,5-dioxygenase
35	 68.85	0	35786..36151	-	121	152985466	-	PSPA7_0034	-	hypothetical protein
36	 62.98	0	36159..36782	-	207	152985987	-	PSPA7_0036	-	putative two-component response regulator
37	 71.00	0	36967..37773	-	268	152983685	trpA	PSPA7_0037	-	tryptophan synthase subunit alpha
38	 67.91	0	37770..38978	-	402	152988472	trpB	PSPA7_0038	-	tryptophan synthase subunit beta
39	 72.82	+1	39076..39969	+	297	152985690	trpI	PSPA7_0039	-	transcriptional regulator TrpI
40	 60.19	-1	40071..40286	+	71	152987643	-	PSPA7_0040	-	hypothetical protein
41	 57.89	-1	40398..40625	+	75	152985189	-	PSPA7_0041	-	hypothetical protein
42	 69.51	0	40918..42606	+	562	152988960	-	PSPA7_0042	-	hypothetical protein
43	 71.43	0	42719..44503	+	594	152984928	-	PSPA7_0043	-	adhesin/hemagglutinin
44	 68.23	0	44500..53214	+	2904	152983920	-	PSPA7_0044	-	filamentous hemagglutinin
45	 32.44	-2	53311..53757	+	148	152984053	-	PSPA7_0045	-	hypothetical protein
46	 33.07	-2	53972..54355	+	127	152986393	-	PSPA7_0046	-	hypothetical protein
47	 71.77	+1	57148..58401	-	417	152988275	-	PSPA7_0047	-	hypothetical protein
48	 65.21	0	58884..59570	+	228	152988492	-	PSPA7_0048	-	putative lipoprotein
49	 64.41	0	59601..59954	+	117	152985080	-	PSPA7_0049	-	putative lipoprotein
50	 68.77	0	59951..60616	+	221	152984316	-	PSPA7_0050	-	putative lipoprotein
51	 71.22	0	60631..61047	-	138	152985027	-	PSPA7_0051	-	putative transcriptional regulator
52	 71.66	+1	61423..63084	-	553	152987632	-	PSPA7_0052	-	hypothetical protein
53	 70.63	0	63619..64047	-	142	152987299	-	PSPA7_0053	-	hypothetical protein
54	 72.50	+1	64300..64848	-	182	152985877	-	PSPA7_0054	-	RNA 2'-phosphotransferase-like protein
55	 65.29	0	64887..65393	-	168	152988210	-	PSPA7_0055	-	hypothetical protein
56	 71.77	+1	65459..66379	-	306	152986508	-	PSPA7_0056	-	putative transcriptional regulator
57	 68.47	0	66487..67374	+	295	152983789	-	PSPA7_0057	-	hypothetical protein
58	 70.51	0	67437..68138	+	233	152984241	-	PSPA7_0058	-	hypothetical protein
59	 65.96	0	68252..68677	+	141	152985750	osmC	PSPA7_0059	-	osmotically inducible protein OsmC
60	 60.68	-1	68788..69021	+	77	152986213	-	PSPA7_0060	-	hypothetical protein
61	 70.78	0	69034..69471	-	145	152985842	-	PSPA7_0061	-	putative lipoprotein
62	 68.59	0	69528..69944	-	138	152989159	-	PSPA7_0062	-	putative lipoprotein
63	 69.63	0	70153..71163	+	336	152984816	-	PSPA7_0063	-	hypothetical protein
64	 71.23	0	71173..72159	-	328	152989166	-	PSPA7_0064	-	hypothetical protein
65	 67.12	0	72192..72857	-	221	152985822	-	PSPA7_0065	-	hypothetical protein
66	 66.67	0	72850..73392	-	180	152985640	-	PSPA7_0066	-	hypothetical protein
67	 68.28	0	73470..75515	+	681	152988920	prlC	PSPA7_0067	-	oligopeptidase A
68	 65.22	0	75512..75787	+	91	152989128	-	PSPA7_0068	-	hypothetical protein
69	 64.02	0	75876..76139	+	87	152989078	-	PSPA7_0069	-	radical SAM family protein
70	 45.10	-2	76186..78540	+	784	152986166	-	PSPA7_0070	-	site-specific recombinase, phage integrase family protein
71	 42.84	-2	78537..80639	+	700	152983603	-	PSPA7_0071	-	site-specific recombinase, phage integrase family protein
72	 43.45	-2	81409..81576	+	55	152984292	-	PSPA7_0072	-	hypothetical protein
73	 46.79	-2	82100..82255	-	51	152984211	-	PSPA7_0073	-	hypothetical protein
74	 43.25	-2	82403..83269	+	288	152989452	-	PSPA7_0074	-	phage integrase family site specific recombinase
75	 61.81	0	83497..85473	+	658	152988798	-	PSPA7_0075	-	N-6 DNA methylase
76	 49.68	-2	85470..86864	+	464	152984823	-	PSPA7_0076	-	type I restriction-modification system, S subunit
77	 62.20	0	86865..90068	+	1067	152989118	-	PSPA7_0077	-	type I site-specific restriction-modification system, R subunit
78	 58.56	-1	90100..90321	-	73	152989688	-	PSPA7_0078	-	hypothetical protein
79	 57.60	-1	90573..91013	+	146	152987774	-	PSPA7_0079	-	hypothetical protein
80	 57.10	-1	91010..92410	+	466	152986233	-	PSPA7_0080	-	helicase domain-containing protein
81	 54.17	-2	92565..92828	+	87	152983764	-	PSPA7_0081	-	hypothetical protein
82	 53.23	-2	93260..93445	+	61	152987146	-	PSPA7_0082	-	hypothetical protein
83	 54.70	-2	93623..93739	-	38	152989392	-	PSPA7_0083	-	hypothetical protein
84	 49.59	-2	93779..93901	-	40	152986039	-	PSPA7_0084	-	hypothetical protein
85	 58.00	-1	93984..94133	+	49	152985098	-	PSPA7_0085	-	hypothetical protein
86	 69.16	0	95398..96480	-	360	152984582	-	PSPA7_0086	-	ultraviolet light resistance protein B
87	 54.62	-2	98024..100189	-	721	152983696	-	PSPA7_0087	-	phage integrase family site specific recombinase
88	 59.52	-1	101261..101386	-	41	152988461	-	PSPA7_0088	-	protein UmuC
89	 67.06	0	101758..102012	-	84	152987476	-	PSPA7_0089	-	hypothetical protein
90	 65.30	0	102193..103875	-	560	152985903	merA2	PSPA7_0090	-	putative mercuric reductase
91	 63.68	0	103908..104342	-	144	152986621	-	PSPA7_0091	-	putative mercury transport protein MerC
92	 61.59	0	104355..104630	-	91	152984115	merP3	PSPA7_0092	-	mercuric transport protein periplasmic component
93	 58.75	-1	104644..105060	-	138	152984840	-	PSPA7_0093	-	putative mercuric transport protein
94	 60.58	-1	105066..105476	+	136	152989484	merR3	PSPA7_0094	-	Hg(II)-responsive transcriptional regulator
95	 61.20	-1	105619..105801	-	60	152987049	-	PSPA7_0095	-	hypothetical protein
96	 56.03	-2	106040..106180	-	46	152987639	-	PSPA7_0096	-	hypothetical protein
97	 52.10	-2	106465..108318	-	617	152985228	-	PSPA7_0097	-	site-specific recombinase, phage integrase family protein
98	 48.73	-2	108299..109915	-	538	152983668	-	PSPA7_0098	-	hypothetical protein
99	 58.91	-1	111181..111309	-	42	152988752	-	PSPA7_0099	-	ultraviolet light resistance protein B
100	 66.67	0	111309..111752	-	147	152987517	-	PSPA7_0100	-	protein MucA
66.39	MEAN

5.05	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.