IslandPath Analysis: Shewanella baltica OS195



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.87   STD DEV: 3.90
Shewanella baltica OS195, complete genome - 1..5347283
4499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.56	0	382..1770	+	462	160873127	-	Sbal195_0001	-	chromosomal replication initiation protein
2	 44.60	0	1790..2890	+	366	160873128	-	Sbal195_0002	-	DNA polymerase III, beta subunit
3	 45.24	0	3092..4174	+	360	160873129	-	Sbal195_0003	-	DNA replication and repair protein RecF
4	 46.53	0	4191..6608	+	805	160873130	-	Sbal195_0004	-	DNA gyrase, B subunit
5	 48.72	0	6721..7383	-	220	160873131	-	Sbal195_0005	-	glutathione S-transferase domain-containing protein
6	 46.53	0	7624..7926	+	100	160873132	-	Sbal195_0006	-	monoheme cytochrome c
7	 47.43	0	7928..9154	+	408	160873133	-	Sbal195_0007	-	oxidoreductase molybdopterin binding
8	 45.31	0	9154..9537	+	127	160873134	-	Sbal195_0008	-	monoheme cytochrome c, putative
9	 44.64	0	9534..9869	+	111	160873135	-	Sbal195_0009	-	monoheme cytochrome c
10	 48.53	0	9960..10880	-	306	160873136	-	Sbal195_0010	-	urea amidolyase related protein
11	 44.86	0	11214..12254	+	346	160873137	-	Sbal195_0011	-	putative signal transduction protein
12	 47.49	0	12342..14411	-	689	160873138	-	Sbal195_0012	-	glycyl-tRNA synthetase subunit beta
13	 49.23	0	14422..15327	-	301	160873139	-	Sbal195_0013	-	glycyl-tRNA synthetase subunit alpha
14	 46.10	0	15445..16047	+	200	160873140	-	Sbal195_0014	-	DNA-3-methyladenine glycosylase I
15	 46.28	0	16248..19436	-	1062	160873141	-	Sbal195_0015	-	amidohydrolase
16	 48.32	0	19698..20144	-	148	160873142	-	Sbal195_0016	-	hypothetical protein
17	 47.56	0	20192..20437	-	81	160873143	-	Sbal195_0017	-	SirA family protein
18	 44.67	0	20608..21771	-	387	160873144	-	Sbal195_0018	-	diguanylate cyclase
19	 49.83	0	22014..23177	-	387	160873145	-	Sbal195_0019	-	3-ketoacyl-CoA thiolase
20	 47.93	0	23200..25350	-	716	160873146	-	Sbal195_0020	-	multifunctional fatty acid oxidation complex subunit alpha
21	 46.86	0	25841..27163	+	440	160873147	-	Sbal195_0021	-	proline dipeptidase
22	 49.76	0	27191..27805	+	204	160873148	-	Sbal195_0022	-	hypothetical protein
23	 47.67	0	27883..29340	+	485	160873149	-	Sbal195_0023	-	TrkH family potassium uptake protein
24	 44.19	0	29343..29867	+	174	160873150	-	Sbal195_0024	-	protoporphyrinogen oxidase
25	 44.66	0	29931..30239	-	102	160873151	-	Sbal195_0025	-	ArsR family transcriptional regulator
26	 46.92	0	30440..30991	+	183	160873152	-	Sbal195_0026	-	protoporphyrinogen oxidase
27	 49.76	0	31062..32504	-	480	160873153	-	Sbal195_0027	-	TrkH family potassium uptake protein
28	 50.64	0	32525..33934	-	469	160873154	-	Sbal195_0028	-	potassium transporter peripheral membrane component
29	 50.89	+1	33950..35236	-	428	160873155	-	Sbal195_0029	-	sun protein
30	 50.99	+1	35238..36194	-	318	160873156	-	Sbal195_0030	-	methionyl-tRNA formyltransferase
31	 43.27	0	36203..36715	-	170	160873157	-	Sbal195_0031	-	peptide deformylase
32	 47.48	0	36841..37971	+	376	160873158	-	Sbal195_0032	-	peptidoglycan-binding LysM
33	 47.89	0	38055..39071	+	338	160873159	-	Sbal195_0033	-	DNA protecting protein DprA
34	 40.30	-1	39074..39547	+	157	160873160	-	Sbal195_0034	-	hypothetical protein
35	 46.32	0	39661..40230	+	189	160873161	-	Sbal195_0035	-	DNA topoisomerase type IA Zn finger domain-containing protein
36	 47.27	0	40357..40923	+	188	160873162	-	Sbal195_0036	-	Sua5/YciO/YrdC/YwlC family protein
37	 49.69	0	40886..41857	+	323	160873163	-	Sbal195_0037	-	coproporphyrinogen III oxidase
38	 45.21	0	41892..42329	-	145	160873164	-	Sbal195_0038	-	globin
39	 51.59	+1	42483..43331	+	282	160873165	-	Sbal195_0039	-	shikimate 5-dehydrogenase
40	 46.74	0	43337..43612	+	91	160873166	-	Sbal195_0040	-	hypothetical protein
41	 46.81	0	43732..44280	-	182	160873167	-	Sbal195_0041	-	carbonic anhydrase
42	 48.15	0	50388..50576	+	62	160873168	-	Sbal195_0042	-	hypothetical protein
43	 44.52	0	50599..51054	+	151	160873169	-	Sbal195_0043	-	BadM/Rrf2 family transcriptional regulator
44	 46.30	0	51029..51784	-	251	160873170	-	Sbal195_0044	-	protein of unknown function DUF610 YibQ
45	 47.35	0	51797..53002	-	401	160873171	-	Sbal195_0045	-	carboxyl-terminal protease
46	 47.20	0	53035..54123	-	362	160873172	-	Sbal195_0046	-	peptidase M23B
47	 50.49	0	54182..55726	-	514	160873173	-	Sbal195_0047	-	phosphoglyceromutase
48	 40.67	-1	55979..56428	+	149	160873174	-	Sbal195_0048	-	rhodanese domain-containing protein
49	 46.91	0	56724..57209	+	161	160873175	-	Sbal195_0049	-	preprotein translocase subunit SecB
50	 51.33	+1	57214..58230	+	338	160873176	-	Sbal195_0050	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
51	 52.24	+1	58424..59608	+	394	160873177	-	Sbal195_0051	-	hypothetical protein
52	 44.94	0	60140..61207	-	355	160873178	-	Sbal195_0052	-	hypothetical protein
53	 45.14	0	61204..61872	-	222	160873179	-	Sbal195_0053	-	hypothetical protein
54	 49.63	0	62524..63885	-	453	160873180	-	Sbal195_0054	-	TrkH family potassium uptake protein
55	 47.07	0	63887..64585	-	232	160873181	-	Sbal195_0055	-	TrkA domain-containing protein
56	 49.71	0	64633..65322	-	229	160873182	-	Sbal195_0056	-	two component transcriptional regulator
57	 50.62	0	65323..66369	-	348	160873183	-	Sbal195_0057	-	integral membrane sensor signal transduction histidine kinase
58	 53.90	+1	66640..67563	-	307	160873184	-	Sbal195_0058	-	pirin domain-containing protein
59	 49.28	0	68089..69762	+	557	160873185	-	Sbal195_0059	-	signal transduction histidine kinase, LytS
60	 48.09	0	69756..70487	+	243	160873186	-	Sbal195_0060	-	LytTR family two component transcriptional regulator
61	 49.40	0	70595..71839	+	414	160873187	-	Sbal195_0061	-	major facilitator transporter
62	 46.61	0	71974..72711	+	245	160873188	-	Sbal195_0062	-	hypothetical protein
63	 50.10	0	72818..73312	+	164	160873189	-	Sbal195_0063	-	NLP/P60 protein
64	 52.66	+1	73371..74834	+	487	160873190	-	Sbal195_0064	-	major facilitator transporter
65	 49.13	0	74927..75958	+	343	160873191	-	Sbal195_0065	-	LacI family transcription regulator
66	 49.56	0	76079..77557	-	492	160873192	-	Sbal195_0066	-	sucrose phosphorylase
67	 48.57	0	77829..79049	+	406	160873193	-	Sbal195_0067	-	major facilitator transporter
68	 48.31	0	79328..81724	+	798	160873194	-	Sbal195_0068	-	TonB-dependent receptor
69	 52.81	+1	81844..82803	+	319	160873195	-	Sbal195_0069	-	ribokinase-like domain-containing protein
70	 51.69	+1	83059..83592	+	177	160873196	-	Sbal195_0070	-	molybdenum cofactor biosynthesis protein
71	 49.55	0	83800..89418	+	1872	160873197	-	Sbal195_0071	-	alpha-2-macroglobulin domain-containing protein
72	 50.15	0	89415..91697	+	760	160873198	-	Sbal195_0072	-	penicillin-binding protein 1C
73	 42.06	-1	91719..91970	-	83	160873199	-	Sbal195_0073	-	hypothetical protein
74	 49.65	0	92078..93217	-	379	160873200	-	Sbal195_0074	-	transport protein, putative
75	 51.16	+1	93312..94046	-	244	160873201	-	Sbal195_0075	-	ABC transporter related
76	 52.36	+1	94050..95699	-	549	160873202	-	Sbal195_0076	-	TAP domain-containing protein
77	 52.96	+1	95793..96164	+	123	160873203	-	Sbal195_0077	-	GntR family transcriptional regulator
78	 49.65	0	96218..97081	+	287	160873204	-	Sbal195_0078	-	ABC transporter related
79	 49.28	0	97078..98388	+	436	160873205	-	Sbal195_0079	-	hypothetical protein
80	 49.72	0	98517..100322	+	601	160873206	-	Sbal195_0080	-	AMP-dependent synthetase and ligase
81	 46.59	0	100466..102916	+	816	160873207	-	Sbal195_0081	-	MORN repeat-containing protein
82	 47.69	0	103044..103454	+	136	160873208	-	Sbal195_0082	-	thioesterase superfamily protein
83	 51.37	+1	103578..104126	+	182	160873209	-	Sbal195_0083	-	HPP family protein?
84	 45.60	0	104193..104885	-	230	160873210	-	Sbal195_0084	-	hypothetical protein
85	 43.45	0	104931..105197	-	88	160873211	-	Sbal195_0085	-	hypothetical protein
86	 47.46	0	105260..105712	-	150	160873212	-	Sbal195_0086	-	thioesterase superfamily protein
87	 49.24	0	105845..106240	+	131	160873213	-	Sbal195_0087	-	glutathione-dependent formaldehyde-activating GFA
88	 49.58	0	106244..106600	+	118	160873214	-	Sbal195_0088	-	MerR family transcriptional regulator
89	 48.84	0	106794..107180	+	128	160873215	-	Sbal195_0089	-	carboxymuconolactone decarboxylase
90	 47.74	0	107476..108558	+	360	160873216	-	Sbal195_0090	-	hypothetical protein
91	 45.81	0	108669..109349	-	226	160873217	-	Sbal195_0091	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
92	 43.91	0	109733..110167	+	144	160873218	-	Sbal195_0092	-	hypothetical protein
93	 44.58	0	110264..111277	+	337	160873219	-	Sbal195_0093	-	hypothetical protein
94	 49.40	0	111613..111780	+	55	160873220	-	Sbal195_0094	-	hypothetical protein
95	 49.01	0	111793..113616	-	607	160873221	-	Sbal195_0095	-	glycerophosphoryl diester phosphodiesterase
96	 46.76	0	113834..114451	-	205	160873222	-	Sbal195_0096	-	FMN-binding negative transcriptional regulator
97	 46.63	0	114808..116484	-	558	160873223	-	Sbal195_0097	-	endonuclease I
98	 48.13	0	117152..117712	+	186	160873224	-	Sbal195_0098	-	MarR family transcriptional regulator
99	 48.48	0	117705..118463	+	252	160873225	-	Sbal195_0099	-	siderophore-interacting protein
100	 50.94	+1	118575..119801	-	408	160873226	-	Sbal195_0100	-	imidazolonepropionase
46.87	MEAN

3.90	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.