IslandPath Analysis: Marinomonas sp. MWYL1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.05   STD DEV: 3.35
Marinomonas sp. MWYL1, complete genome - 1..5100344
4439 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.29	0	262..1812	+	516	152994044	-	Mmwyl1_0001	-	chromosomal replication initiator protein DnaA
2	 43.81	0	1845..2942	+	365	152994045	-	Mmwyl1_0002	-	DNA polymerase III subunit beta
3	 44.99	0	3044..4150	+	368	152994046	-	Mmwyl1_0003	-	recombination protein F
4	 45.71	0	4151..6574	+	807	152994047	-	Mmwyl1_0004	-	DNA gyrase, B subunit
5	 48.35	+1	6658..7503	-	281	152994048	-	Mmwyl1_0005	-	NmrA family protein
6	 43.00	0	7587..8000	+	137	152994049	-	Mmwyl1_0006	-	HxlR family transcriptional regulator
7	 44.73	0	8078..8779	-	233	152994050	-	Mmwyl1_0007	-	hypothetical protein
8	 43.65	0	8876..11017	-	713	152994051	-	Mmwyl1_0008	-	TonB-dependent siderophore receptor
9	 41.80	0	11157..12077	-	306	152994052	-	Mmwyl1_0009	-	helix-turn-helix domain-containing protein
10	 45.53	0	12252..13382	+	376	152994053	-	Mmwyl1_0010	-	major facilitator transporter
11	 46.06	0	13459..14016	-	185	152994054	-	Mmwyl1_0011	-	histidinol-phosphate phosphatase family protein
12	 45.99	0	14078..14551	-	157	152994055	-	Mmwyl1_0012	-	ybaK/ebsC protein
13	 43.82	0	14591..16039	-	482	152994056	-	Mmwyl1_0013	-	TrkH family potassium uptake protein
14	 45.05	0	16144..17517	-	457	152994057	-	Mmwyl1_0014	-	TrkA domain-containing protein
15	 43.20	0	17921..19309	-	462	152994058	-	Mmwyl1_0015	-	sun protein
16	 47.35	+1	19306..20304	-	332	152994059	-	Mmwyl1_0016	-	methionyl-tRNA formyltransferase
17	 40.48	0	20390..20935	-	181	152994060	-	Mmwyl1_0017	-	peptide deformylase
18	 43.94	0	21139..22467	+	442	152994061	-	Mmwyl1_0018	-	DNA protecting protein DprA
19	 45.08	0	22549..22965	-	138	152994062	-	Mmwyl1_0019	-	RNA-binding S4 domain-containing protein
20	 46.92	+1	23010..23870	+	286	152994063	-	Mmwyl1_0020	-	3'(2'),5'-bisphosphate nucleotidase
21	 40.36	0	24000..25592	-	530	152994064	-	Mmwyl1_0021	-	alpha amylase catalytic region
22	 43.15	0	25594..26622	-	342	152994065	-	Mmwyl1_0022	-	ABC transporter related
23	 44.36	0	26635..27468	-	277	152994066	-	Mmwyl1_0023	-	binding-protein-dependent transport systems inner membrane component
24	 42.68	0	27465..28427	-	320	152994067	-	Mmwyl1_0024	-	binding-protein-dependent transport systems inner membrane component
25	 42.16	0	28499..29767	-	422	152994068	-	Mmwyl1_0025	-	extracellular solute-binding protein
26	 41.30	0	30008..30973	+	321	152994069	-	Mmwyl1_0026	-	regulatory protein LacI
27	 43.85	0	31137..31916	+	259	152994070	-	Mmwyl1_0027	-	hypothetical protein
28	 44.67	0	31916..32965	+	349	152994071	-	Mmwyl1_0028	-	oxidoreductase domain-containing protein
29	 43.32	0	32992..34113	+	373	152994072	-	Mmwyl1_0029	-	oxidoreductase domain-containing protein
30	 44.84	0	34144..34734	-	196	152994073	-	Mmwyl1_0030	-	TetR family transcriptional regulator
31	 50.99	+2	34864..36132	+	422	152994074	-	Mmwyl1_0031	-	Beta-ketoacyl synthase
32	 46.18	0	36221..37543	-	440	152994075	-	Mmwyl1_0032	-	TRAP dicarboxylate transporter, DctM subunit
33	 43.26	0	37540..38103	-	187	152994076	-	Mmwyl1_0033	-	tripartite ATP-independent periplasmic transporter DctQ
34	 46.49	+1	38181..39206	-	341	152994077	-	Mmwyl1_0034	-	TRAP dicarboxylate transporter- DctP subunit
35	 42.71	0	40065..41003	+	312	152994078	-	Mmwyl1_0035	-	LysR family transcriptional regulator
36	 41.54	0	41014..41781	-	255	152994079	-	Mmwyl1_0036	-	GntR domain-containing protein
37	 44.14	0	41953..43164	+	403	152994080	-	Mmwyl1_0037	-	mandelate racemase/muconate lactonizing protein
38	 45.16	0	43171..44193	+	340	152994081	-	Mmwyl1_0038	-	alcohol dehydrogenase
39	 37.80	-1	44291..45253	+	320	152994082	-	Mmwyl1_0039	-	TRAP dicarboxylate transporter, DctP subunit
40	 29.14	-2	45303..45803	+	166	152994083	-	Mmwyl1_0040	-	tripartite ATP-independent periplasmic transporter DctQ
41	 35.91	-2	45805..47085	+	426	152994084	-	Mmwyl1_0041	-	TRAP dicarboxylate transporter, DctM subunit
42	 40.10	0	47089..48138	+	349	152994085	-	Mmwyl1_0042	-	malate/L-lactate dehydrogenase
43	 42.53	0	48273..49229	+	318	152994086	-	Mmwyl1_0043	-	TRAP dicarboxylate transporter, DctP subunit
44	 41.76	0	49315..49860	+	181	152994087	-	Mmwyl1_0044	-	tripartite ATP-independent periplasmic transporter DctQ
45	 42.43	0	49860..51134	+	424	152994088	-	Mmwyl1_0045	-	TRAP dicarboxylate transporter, DctM subunit
46	 42.69	0	51182..52132	-	316	152994089	-	Mmwyl1_0046	-	LysR family transcriptional regulator
47	 46.24	0	52619..53896	-	425	152994090	-	Mmwyl1_0047	-	4-aminobutyrate aminotransferase
48	 48.88	+1	53989..55455	-	488	152994091	-	Mmwyl1_0048	-	succinic semialdehyde dehydrogenase
49	 44.27	0	55940..58051	+	703	152994092	-	Mmwyl1_0049	-	TonB-dependent siderophore receptor
50	 46.34	0	58210..58878	+	222	152994093	-	Mmwyl1_0050	-	GntR family transcriptional regulator
51	 47.01	+1	60296..61231	-	311	152994094	-	Mmwyl1_0052	-	proline racemase
52	 47.75	+1	61222..62199	-	325	152994095	-	Mmwyl1_0053	-	dihydrodipicolinate synthase
53	 43.79	0	62412..62765	+	117	152994096	-	Mmwyl1_0054	-	hypothetical protein
54	 45.53	0	62842..62964	-	40	152994097	-	Mmwyl1_0055	-	hypothetical protein
55	 40.54	0	63018..63239	-	73	152994098	-	Mmwyl1_0056	-	hypothetical protein
56	 36.29	-2	63241..63477	-	78	152994099	-	Mmwyl1_0057	-	hypothetical protein
57	 50.36	+2	63557..64960	-	467	152994100	-	Mmwyl1_0058	-	dihydrolipoamide dehydrogenase
58	 45.63	0	65102..65662	+	186	152994101	-	Mmwyl1_0059	-	TetR family transcriptional regulator
59	 44.09	0	65758..66696	+	312	152994102	-	Mmwyl1_0060	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
60	 46.98	+1	66821..67765	+	314	152994103	-	Mmwyl1_0061	-	coproporphyrinogen III oxidase
61	 46.44	+1	67792..68592	+	266	152994104	-	Mmwyl1_0062	-	shikimate 5-dehydrogenase
62	 46.86	+1	68631..69791	+	386	152994105	-	Mmwyl1_0063	-	hypothetical protein
63	 47.21	+1	69798..70784	-	328	152994106	-	Mmwyl1_0064	-	helix-turn-helix type 11 domain-containing protein
64	 47.04	+1	70965..71606	+	213	152994107	-	Mmwyl1_0065	-	glutathione S-transferase domain-containing protein
65	 44.42	0	71690..72880	-	396	152994108	-	Mmwyl1_0066	-	nitric oxide dioxygenase
66	 46.34	0	73031..74683	+	550	152994109	-	Mmwyl1_0067	-	anaerobic nitric oxide reductase transcription regulator
67	 45.29	0	74763..75197	-	144	152994110	-	Mmwyl1_0068	-	globin
68	 46.05	0	75813..77102	+	429	152994111	-	Mmwyl1_0069	-	MATE efflux family protein
69	 45.90	0	77220..78110	+	296	152994112	-	Mmwyl1_0070	-	shikimate 5-dehydrogenase
70	 48.13	+1	78137..78913	-	258	152994113	-	Mmwyl1_0071	-	GntR domain-containing protein
71	 49.03	+1	79167..82046	+	959	152994114	-	Mmwyl1_0072	-	D-lactate dehydrogenase (cytochrome)
72	 46.50	+1	83146..83631	+	161	152994115	-	Mmwyl1_0073	-	Acetyl-CoA C-acetyltransferase
73	 45.63	0	83792..84832	+	346	152994116	-	Mmwyl1_0074	-	delta-aminolevulinic acid dehydratase
74	 42.37	0	84842..85726	+	294	152994117	-	Mmwyl1_0075	-	hypothetical protein
75	 38.00	-1	85792..86520	+	242	152994118	-	Mmwyl1_0076	-	response regulator receiver protein
76	 54.73	+2	86773..87015	+	80	152994119	-	Mmwyl1_0077	-	FAD linked oxidase-like protein
77	 39.61	-1	87149..88678	-	509	152994120	-	Mmwyl1_0078	-	KAP P-loop domain-containing protein
78	 45.72	0	88856..89662	-	268	152994121	-	Mmwyl1_0079	-	hypothetical protein
79	 45.45	0	89743..90633	-	296	152994122	-	Mmwyl1_0080	-	LysR family transcriptional regulator
80	 39.81	0	90785..91000	+	71	152994123	-	Mmwyl1_0081	-	hypothetical protein
81	 45.13	0	91096..92502	-	468	152994124	-	Mmwyl1_0082	-	amino acid carrier protein
82	 45.19	0	92726..93847	-	373	152994125	-	Mmwyl1_0083	-	phenylalanyl-tRNA synthetase, class IIC
83	 40.12	0	94215..95717	-	500	152994126	-	Mmwyl1_0084	-	major facilitator transporter
84	 40.95	0	95936..96802	+	288	152994127	-	Mmwyl1_0085	-	LysR family transcriptional regulator
85	 48.08	+1	96816..97466	-	216	152994128	-	Mmwyl1_0086	-	hypothetical protein
86	 43.73	0	97492..99069	+	525	152994129	-	Mmwyl1_0087	-	GntR family transcriptional regulator
87	 39.25	-1	99223..99678	+	151	152994130	-	Mmwyl1_0088	-	hypothetical protein
88	 41.07	0	99838..100884	+	348	152994131	-	Mmwyl1_0089	-	ubiquinol oxidase, subunit II
89	 44.14	0	100884..102863	+	659	152994132	-	Mmwyl1_0090	-	cytochrome o ubiquinol oxidase subunit I
90	 43.79	0	102866..103477	+	203	152994133	-	Mmwyl1_0091	-	cytochrome o ubiquinol oxidase subunit III
91	 38.27	-1	103477..103800	+	107	152994134	-	Mmwyl1_0092	-	cytochrome o ubiquinol oxidase subunit IV
92	 45.34	0	103872..104762	+	296	152994135	-	Mmwyl1_0093	-	protoheme IX farnesyltransferase
93	 42.30	0	104930..106591	+	553	152994136	-	Mmwyl1_0094	-	tannase and feruloyl esterase
94	 48.40	+1	106603..107352	-	249	152994137	-	Mmwyl1_0095	-	short-chain dehydrogenase/reductase SDR
95	 42.02	0	107555..107980	+	141	152994138	-	Mmwyl1_0096	-	MarR family transcriptional regulator
96	 43.47	0	108005..109069	+	354	152994139	-	Mmwyl1_0097	-	secretion protein HlyD family protein
97	 44.86	0	109080..110606	+	508	152994140	-	Mmwyl1_0098	-	EmrB/QacA family drug resistance transporter
98	 42.69	0	110794..111402	+	202	152994141	-	Mmwyl1_0099	-	hypothetical protein
99	 44.44	0	111392..112453	+	353	152994142	-	Mmwyl1_0100	-	rRNA (guanine-N(2)-)-methyltransferase
100	 39.81	0	112550..113167	-	205	152994143	-	Mmwyl1_0101	-	lysine exporter protein LysE/YggA
43.05	MEAN

3.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.