IslandPath Analysis: Polaromonas sp. JS666



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.60   STD DEV: 4.16
Polaromonas sp. JS666, complete genome - 1..5200264
4817 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.92	0	40..1434	+	464	91785914	-	Bpro_0001	-	chromosomal replication initiator protein DnaA
2	 60.34	0	1723..2829	+	368	91785915	-	Bpro_0002	-	DNA polymerase III, beta subunit
3	 62.59	0	2944..5568	+	874	91785916	-	Bpro_0003	-	DNA gyrase subunit B
4	 51.99	-2	5583..7565	+	660	91785917	-	Bpro_0004	-	hypothetical protein
5	 55.56	-1	7574..8014	-	146	91785918	-	Bpro_0005	-	hypothetical protein
6	 47.00	-2	8077..8559	+	160	91785919	-	Bpro_0006	-	hypothetical protein
7	 62.92	0	8675..8914	+	79	91785920	-	Bpro_0007	-	hypothetical protein
8	 67.18	+1	9217..9795	+	192	91785921	-	Bpro_0008	-	NnrU
9	 67.48	+1	9806..10417	+	203	91785922	-	Bpro_0009	-	DNA polymerase III, epsilon subunit
10	 61.62	0	10619..10816	+	65	91785923	-	Bpro_0010	-	hypothetical protein
11	 61.49	0	10874..12052	-	392	91785924	-	Bpro_0011	-	ATPase
12	 61.17	0	12199..12507	+	102	91785925	-	Bpro_0012	-	prevent-host-death protein
13	 64.07	0	12504..12926	+	140	91785926	-	Bpro_0013	-	PilT protein-like
14	 66.50	0	13100..14320	+	406	91785927	-	Bpro_0014	-	filamentation induced by cAMP protein Fic
15	 64.65	0	14503..15492	-	329	91785928	-	Bpro_0015	-	hypothetical protein
16	 70.47	+1	15672..16328	+	218	91785929	-	Bpro_0016	-	hypothetical protein
17	 68.58	+1	16482..18260	-	592	91785930	-	Bpro_0017	-	2-octaprenylphenol hydroxylase
18	 59.77	0	18471..18731	-	86	91785931	-	Bpro_0018	-	cell division topological specificity factor MinE
19	 63.13	0	18736..19554	-	272	91785932	-	Bpro_0019	-	septum site-determining protein MinD
20	 69.55	+1	19602..20399	-	265	91785933	-	Bpro_0020	-	septum site-determining protein MinC
21	 68.47	+1	20761..21927	+	388	91785934	-	Bpro_0021	-	metallophosphoesterase
22	 58.43	-1	22027..22536	-	169	91785935	-	Bpro_0022	-	hypothetical protein
23	 70.34	+1	22740..23120	+	126	91785936	-	Bpro_0023	-	hypothetical protein
24	 65.78	0	23414..24430	-	338	91785937	-	Bpro_0024	-	hypothetical protein
25	 67.43	+1	24438..25748	-	436	91785938	-	Bpro_0025	-	cardiolipin synthase 2
26	 65.30	0	25975..26778	-	267	91785939	-	Bpro_0026	-	endonuclease/exonuclease/phosphatase
27	 68.64	+1	27556..28011	+	151	91785940	-	Bpro_0027	-	60S ribosomal protein L19
28	 66.48	0	28114..29184	-	356	91785941	-	Bpro_0028	-	NADPH-dependent FMN reductase
29	 68.96	+1	29716..30282	-	188	91785942	-	Bpro_0029	-	hypothetical protein
30	 64.72	0	30702..31676	+	324	91785943	rdgC	Bpro_0030	-	recombination associated protein
31	 70.96	+2	31696..33045	-	449	91785944	-	Bpro_0031	-	type III effector Hrp-dependent outers
32	 69.62	+1	33048..34334	-	428	91785945	-	Bpro_0032	-	ribulose 1,5-bisphosphate carboxylase large subunit
33	 62.59	0	34346..34885	-	179	91785946	-	Bpro_0033	-	hypothetical protein
34	 66.19	0	34935..36818	-	627	91785947	-	Bpro_0034	-	TRAP C4-dicarboxylate transport system permease DctM subunit
35	 64.41	0	37198..38217	-	339	91785948	-	Bpro_0035	-	TRAP dicarboxylate transporter, DctP subunit
36	 65.35	0	38331..39395	+	354	91785949	-	Bpro_0036	-	LacI family transcription regulator
37	 63.17	0	39663..41579	+	638	91785950	-	Bpro_0037	-	thiamine biosynthesis protein ThiC
38	 70.34	+1	41740..42801	+	353	91785951	-	Bpro_0038	-	FAD dependent oxidoreductase
39	 63.05	0	42777..43025	-	82	91785952	-	Bpro_0039	-	hypothetical protein
40	 69.49	+1	43149..43964	+	271	91785953	thiG	Bpro_0040	-	thiazole synthase
41	 69.91	+1	44115..44762	+	215	91785954	-	Bpro_0041	-	thiamine-phosphate pyrophosphorylase
42	 61.64	0	44836..45432	+	198	91785955	-	Bpro_0042	-	hemerythrin HHE cation binding region
43	 60.21	0	45480..45866	-	128	91785956	-	Bpro_0043	-	hypothetical protein
44	 67.10	+1	46179..47336	-	385	91785957	-	Bpro_0044	-	peptidase M20D, amidohydrolase
45	 63.43	0	47348..48058	-	236	91785958	-	Bpro_0045	-	HAD family hydrolase
46	 66.16	0	48118..48513	-	131	91785959	-	Bpro_0046	-	AraC family transcriptional regulator
47	 63.33	0	48710..49069	+	119	91785960	-	Bpro_0047	-	protein of unknown function DUF861, cupin_3
48	 64.37	0	49129..50259	-	376	91785961	-	Bpro_0048	-	FAD dependent oxidoreductase
49	 67.61	+1	50256..51632	-	458	91785962	-	Bpro_0049	-	BFD-like (2Fe-2S)-binding region
50	 67.89	+1	51629..51955	-	108	91785963	-	Bpro_0050	-	hypothetical protein
51	 55.15	-1	51994..52488	-	164	91785964	-	Bpro_0051	-	AsnC family transcriptional regulator
52	 64.50	0	52521..53906	-	461	91785965	-	Bpro_0052	-	hypothetical protein
53	 65.16	0	54049..54975	-	308	91785966	-	Bpro_0053	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
54	 67.24	+1	55004..55879	-	291	91785967	-	Bpro_0054	-	GCN5-related N-acetyltransferase
55	 64.93	0	56105..57601	+	498	91785968	-	Bpro_0055	-	betaine-aldehyde dehydrogenase
56	 59.31	0	57853..58518	+	221	91785969	-	Bpro_0056	-	haloacid dehalogenase, type II
57	 64.57	0	58536..59825	+	429	91785970	-	Bpro_0057	-	FAD dependent oxidoreductase
58	 63.33	0	59868..61487	+	539	91785971	-	Bpro_0058	-	extracellular solute-binding protein
59	 64.26	0	61678..62634	+	318	91785972	-	Bpro_0059	-	binding-protein-dependent transport systems inner membrane component
60	 67.24	+1	62631..63506	+	291	91785973	-	Bpro_0060	-	binding-protein-dependent transport systems inner membrane component
61	 66.34	0	63506..65332	+	608	91785974	-	Bpro_0061	-	ABC transporter related
62	 65.04	0	65371..66849	+	492	91785975	-	Bpro_0062	-	succinate semialdehyde dehydrogenase
63	 68.39	+1	66905..68005	-	366	91785976	-	Bpro_0063	-	NADH:flavin oxidoreductase/NADH oxidase
64	 57.17	-1	68339..68812	+	157	91785977	-	Bpro_0064	-	cytochrome c family protein, putative
65	 70.56	+1	69250..70635	+	461	91785978	-	Bpro_0065	-	hypothetical protein
66	 58.06	-1	70905..71090	+	61	91785979	-	Bpro_0066	-	hypothetical protein
67	 67.41	+1	71091..71492	+	133	91785980	-	Bpro_0067	-	hypothetical protein
68	 62.88	0	71565..72410	+	281	91785981	-	Bpro_0068	-	transglutaminase-like
69	 64.46	0	72477..73247	-	256	91785982	-	Bpro_0069	-	class II aldolase/adducin-like
70	 69.47	+1	73407..74297	-	296	91785983	-	Bpro_0070	-	LysR family transcriptional regulator
71	 69.38	+1	74624..74881	-	85	91785984	-	Bpro_0071	-	hypothetical protein
72	 66.49	0	74984..75562	-	192	91785985	-	Bpro_0072	-	NADPH-dependent FMN reductase
73	 62.76	0	75959..77980	+	673	91785986	-	Bpro_0073	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
74	 62.70	0	77980..78660	+	226	91785987	-	Bpro_0074	-	methyltransferase GidB
75	 60.45	0	78774..79400	+	208	91785988	-	Bpro_0075	-	lysine exporter protein LysE/YggA
76	 62.39	0	79516..80286	+	256	91785989	-	Bpro_0076	-	chromosome segregation ATPase
77	 67.96	+1	80382..80921	+	179	91785990	-	Bpro_0077	-	hypothetical protein
78	 65.38	0	81003..81938	+	311	91785991	-	Bpro_0078	-	chromosome segregation DNA-binding protein
79	 61.71	0	82151..82816	+	221	91785992	-	Bpro_0079	-	glutathione S-transferase-like
80	 69.90	+1	83292..84251	+	319	91785993	-	Bpro_0080	-	indigoidine synthase A like protein
81	 73.27	+2	84470..85696	+	408	91785994	-	Bpro_0081	-	tetratricopeptide TPR_4
82	 68.16	+1	85761..86429	+	222	91785995	-	Bpro_0082	-	hypothetical protein
83	 63.03	0	86568..87365	+	265	91785996	-	Bpro_0083	-	protein of unknown function DUF899, thioredoxin-like
84	 72.45	+2	87391..87978	+	195	91785997	-	Bpro_0084	-	hypothetical protein
85	 60.82	0	88293..88634	+	113	91785998	-	Bpro_0085	-	alkylphosphonate utilization operon protein PhnA
86	 67.19	+1	88826..90343	+	505	91785999	-	Bpro_0086	-	2,5-dioxopentanoate dehydrogenase (NAD+)
87	 65.10	0	90837..91667	+	276	91786000	-	Bpro_0087	-	hypothetical protein
88	 62.45	0	91762..92757	+	331	91786001	-	Bpro_0088	-	TRAP dicarboxylate transporter, DctP subunit
89	 68.61	+1	92760..93326	+	188	91786002	-	Bpro_0089	-	tripartite ATP-independent periplasmic transporter DctQ
90	 65.10	0	93350..94690	+	446	91786003	-	Bpro_0090	-	TRAP dicarboxylate transporter- DctM subunit
91	 69.22	+1	94731..96179	+	482	91786004	-	Bpro_0091	-	betaine-aldehyde dehydrogenase
92	 67.45	+1	96213..96974	+	253	91786005	-	Bpro_0092	-	3-ketoacyl-(acyl-carrier-protein) reductase
93	 69.89	+1	97094..98335	+	413	91786006	-	Bpro_0093	-	ribulose 1,5-bisphosphate carboxylase large subunit
94	 72.05	+2	98341..99714	+	457	91786007	-	Bpro_0094	-	type III effector Hrp-dependent outers
95	 69.33	+1	99774..100487	+	237	91786008	-	Bpro_0095	-	transcriptional regulator NanR
96	 62.61	0	100735..101523	+	262	91786009	-	Bpro_0097	-	short-chain dehydrogenase/reductase SDR
97	 63.43	0	101791..102594	-	267	91786010	-	Bpro_0098	-	hypothetical protein
98	 60.53	0	102896..103237	+	113	91786011	-	Bpro_0099	-	alkylphosphonate utilization operon protein PhnA
99	 69.21	+1	103719..104111	+	130	91786012	-	Bpro_0100	-	TraR/DksA family transcriptional regulator
100	 63.40	0	104975..105679	-	234	91786013	-	Bpro_0101	-	short chain dehydrogenase
62.60	MEAN

4.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.