IslandPath Analysis: Xanthomonas oryzae pv. oryzae PXO99A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.70   STD DEV: 3.77
Xanthomonas oryzae pv. oryzae PXO99A, complete genome - 1..5240075
4988 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.71	0	45..1373	+	442	188574271	dnaA	PXO_03483	-	chromosomal replication initiator protein DnaA
2	 61.67	0	1651..2751	+	366	188574272	dnaN	PXO_03482	-	DNA polymerase III, beta subunit
3	 64.48	0	4013..5110	+	365	188574273	-	PXO_03481	-	DNA replication and repair RecF protein
4	 64.42	0	5226..7670	+	814	188574274	gyrB	PXO_03480	-	DNA gyrase, B subunit
5	 66.55	0	7738..8574	+	278	188574275	-	PXO_03479	-	caax amino terminal protease family
6	 64.06	0	8761..9567	+	268	188574276	ste24p	PXO_03478	-	peptidase M48, Ste24p
7	 59.88	-1	9844..11037	+	397	188574277	-	PXO_03477	-	tetratricopeptide repeat domain protein
8	 65.95	0	11308..11862	+	184	188574278	-	PXO_03476	-	TonB protein
9	 64.04	0	11947..12708	+	253	188574279	-	PXO_03475	-	biopolymer transport ExbB protein
10	 58.97	-1	12788..13177	+	129	188574280	-	PXO_03474	-	biopolymer transport ExbD1 protein
11	 60.37	0	13214..13594	+	126	188574281	-	PXO_03473	-	biopolymer transport ExbD2 protein
12	 64.97	0	13890..14657	-	255	188574282	pdxJ	PXO_03472	-	pyridoxal phosphate biosynthesis protein PdxJ
13	 68.27	+1	14668..14916	-	82	188574283	-	PXO_03471	-	hypothetical protein
14	 66.53	0	15012..16472	-	486	188574284	-	PXO_03470	-	cardiolipin synthetase
15	 65.08	0	17119..18129	-	336	188574285	fbp	PXO_03469	-	fructose-1,6-bisphosphatase
16	 65.50	0	18401..19603	-	400	188574286	-	PXO_03468	-	aspartate aminotransferase
17	 68.12	+1	19745..21883	+	712	188574287	-	PXO_03467	-	TonB-dependent outer membrane Receptor
18	 65.99	0	22094..22387	+	97	188574288	-	PXO_03466	-	hypothetical protein
19	 63.68	0	22419..22652	-	77	188574289	-	PXO_03465	-	hypothetical protein
20	 62.28	0	23163..24143	-	326	188574290	-	PXO_03464	-	ISXoo7 transposase
21	 66.84	0	24191..25357	-	388	188574291	-	PXO_03463	-	L-lactate dehydrogenase
22	 65.20	0	25504..25776	-	90	188574292	-	PXO_03462	-	isoprenylcysteine carboxyl methyltransferase (icmt) family
23	 67.15	0	26212..26829	-	205	188574293	-	PXO_03461	-	transcriptional regulator
24	 67.42	0	27070..27201	-	43	188574294	-	PXO_03459	-	transcriptional regulator
25	 64.04	0	27546..28763	+	405	188574295	-	PXO_03458	-	trans-2-enoyl-CoA reductase
26	 58.77	-1	28787..28900	-	37	188574296	-	PXO_03457	-	hypothetical protein
27	 60.38	0	29030..29188	-	52	188574297	-	PXO_03456	-	hypothetical protein
28	 67.55	+1	29384..30406	-	340	188574298	-	PXO_03455	-	2-keto-3-deoxygluconate kinase
29	 65.02	0	30732..30974	+	80	188574299	-	PXO_03454	-	TonB-dependent receptor
30	 58.70	-1	32636..33112	+	158	188574300	-	PXO_03450	-	transposase (IS4 family)
31	 60.48	0	34518..34727	-	69	188574301	-	PXO_03449	-	transposase
32	 64.86	0	34958..35620	-	220	188574302	-	PXO_03448	-	hypothetical protein
33	 68.81	+1	35774..36568	-	264	188574303	lasA	PXO_03447	-	LasA
34	 63.25	0	36546..36662	-	38	188574304	-	PXO_03446	-	hypothetical protein
35	 65.23	0	36724..37209	+	161	188574305	-	PXO_03445	-	hypothetical protein
36	 62.33	0	37568..38212	-	214	188574306	-	PXO_03444	-	proline-betaine transporter
37	 64.58	0	38213..38788	-	191	188574307	-	PXO_03443	-	proline/betaine transporter
38	 61.52	0	39435..40523	-	362	188574308	-	PXO_03442	-	ISXo2 putative transposase
39	 65.57	0	40591..40863	-	90	188574309	-	PXO_03441	-	thioredoxin
40	 63.16	0	40884..41282	-	132	188574310	atsE	PXO_03440	-	AtsE
41	 67.24	0	41374..42066	-	230	188574311	-	PXO_03439	-	hypothetical protein
42	 69.33	+1	42236..42685	-	149	188574312	mutT	PXO_03438	-	MutT-nudix family protein
43	 63.84	0	42822..42998	+	58	188574313	-	PXO_03437	-	hypothetical protein
44	 64.10	0	43461..44084	+	207	188574314	-	PXO_03436	-	neutral protease A
45	 66.67	0	44057..44176	+	39	188574315	-	PXO_03435	-	hypothetical protein
46	 67.10	0	44254..44484	+	76	188574316	-	PXO_03434	-	hypothetical protein
47	 59.70	-1	44739..45686	-	315	188574317	-	PXO_03433	-	ISXoo15 transposase
48	 63.61	0	45827..46873	-	348	188574318	-	PXO_03432	-	ISXoo2 transposase
49	 58.62	-1	47120..47293	+	57	188574319	-	PXO_03431	-	hypothetical protein
50	 61.30	0	47346..47606	+	86	188574320	-	PXO_03430	-	hypothetical protein
51	 62.90	0	47698..47883	+	61	188574321	-	PXO_03429	-	putative secreted protein
52	 61.89	0	47997..48959	-	320	188574322	-	PXO_03428	-	ISXoo6 transposase
53	 62.91	0	49028..49453	+	141	188574323	-	PXO_03427	-	hypothetical protein
54	 68.36	+1	49654..50541	+	295	188574324	-	PXO_03426	-	cell division inhibitor
55	 60.83	0	51290..51409	-	39	188574325	-	PXO_05414	-	hypothetical protein
56	 62.79	0	51624..52475	-	283	188574326	-	PXO_03425	-	histone H1
57	 65.48	0	52717..54153	+	478	188574327	-	PXO_03424	-	protease do
58	 66.94	0	54270..54632	+	120	188574328	-	PXO_03423	-	hypothetical protein
59	 65.23	0	54636..55121	+	161	188574329	-	PXO_03422	-	hypothetical protein
60	 63.27	0	55208..55501	+	97	188574330	-	PXO_03421	-	hypothetical protein
61	 63.05	0	56059..57495	-	478	188574331	hpaF	PXO_03420	-	HpaF leucine rich hrp associated protein
62	 54.35	-2	58067..58204	-	45	188574332	-	PXO_03419	-	hypothetical protein
63	 59.83	-1	58413..58529	-	38	188574333	-	PXO_03418	-	hypothetical protein
64	 59.07	-1	58563..60971	-	802	188574334	hrpF	PXO_03417	-	HrpF/NolX/HrpK
65	 52.73	-2	61493..61657	+	54	188574335	-	PXO_03416	-	transposase
66	 63.61	0	61663..62874	+	403	188574336	isXo8	PXO_03415	-	ISXo8 transposase
67	 64.17	0	63109..63549	+	146	188574337	hpa3	PXO_03414	-	Hpa3
68	 62.73	0	63828..65531	+	567	188574338	xopF1	PXO_03413	-	XopF1 effector
69	 55.73	-2	65947..66138	-	63	188574339	hpaB	PXO_03412	-	HpaB
70	 54.09	-2	66472..66630	-	52	188574340	hrpE	PXO_03411	-	HrpE type III pilin
71	 60.49	0	66834..67076	-	80	188574341	hrpD6	PXO_03410	-	HrpD6
72	 64.16	0	67086..67844	-	252	188574342	-	PXO_03409	-	HrpD5
73	 63.41	0	68021..68848	-	275	188574343	hpaA	PXO_03408	-	HpaA
74	 65.20	0	68845..69048	-	67	188574344	hrcS	PXO_03407	-	HrcS
75	 58.76	-1	69110..69754	-	214	188574345	epaP	PXO_03406	-	type III secretion apparatus protein, YscR/HrcR family
76	 63.02	0	69741..70562	-	273	188574346	hrpD1	PXO_03405	-	type III secretion apparatus protein, YscQ/HrcQ family
77	 62.25	0	70919..71167	+	82	188574347	-	PXO_03404	-	hypothetical protein
78	 61.74	0	71428..73314	-	628	188574348	hrcV	PXO_03403	-	HrcV
79	 59.07	-1	73359..74438	-	359	188574349	hrcU	PXO_03402	-	HrcU
80	 63.15	0	74683..75108	+	141	188574350	-	PXO_03401	-	type III secretion protein HrpB1/HrpK
81	 61.07	0	75142..75534	+	130	188574351	-	PXO_03400	-	type III secretion protein HrpB2
82	 61.40	0	75557..76297	+	246	188574352	-	PXO_03399	-	type III secretion apparatus lipoprotein, YscJ/HrcJ family
83	 67.71	+1	76362..76934	+	190	188574353	-	PXO_03398	-	type III secretion protein HrpB4
84	 68.80	+1	76919..77620	+	233	188574354	-	PXO_03397	-	type III secretion apparatus protein, HrpE/YscL family
85	 65.46	0	77610..78938	+	442	188574355	-	PXO_03396	-	type III secretion apparatus H+-transporting two-sector ATPase
86	 65.69	0	78931..79440	+	169	188574356	-	PXO_03395	-	type III secretion protein HrpB7
87	 64.00	0	78966..79115	-	49	188574357	-	PXO_05802	-	hypothetical protein
88	 61.49	0	79437..80267	+	276	188574358	epaR	PXO_03394	-	type III secretion apparatus protein SpaR/YscT/HrcT
89	 62.50	0	80392..82167	+	591	188574359	hrpA1	PXO_03393	-	HrpA type III secretion outer membrane pore, YscC/HrcC family
90	 60.24	0	82906..83325	-	139	188574360	hpa1	PXO_03392	-	Hpa1
91	 59.02	-1	83705..83887	-	60	188574361	-	PXO_05803	-	hypothetical protein
92	 53.52	-2	83938..84264	+	108	188574362	hpa2	PXO_03391	-	Hpa2
93	 61.64	0	84728..85642	-	304	188574363	-	PXO_03390	-	hypothetical protein
94	 62.50	0	85667..85882	+	71	188574364	-	PXO_03389	-	hypothetical protein
95	 63.84	0	86278..86454	-	58	188574365	-	PXO_05417	-	hypothetical protein
96	 64.10	0	87379..87612	-	77	188574366	-	PXO_03388	-	ISXoo2 transposase
97	 66.27	0	87649..88146	-	165	188574367	-	PXO_03387	-	transposase
98	 63.29	0	88146..88352	-	68	188574368	-	PXO_03386	-	putative transposase
99	 66.37	0	88496..88837	-	113	188574369	-	PXO_03385	-	hypothetical protein
100	 64.10	0	89169..91580	+	803	188574370	-	PXO_03384	-	small-conductance mechanosensitive channel
63.70	MEAN

3.77	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.