IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.67	-1	608..832	+	74	162145847	-	GDI0002	-	hypothetical protein
2	 58.79	-1	864..2780	+	638	162145848	-	GDI0003	-	hypothetical protein
3	 58.83	-1	2777..4333	+	518	162145849	-	GDI0004	-	hypothetical protein
4	 60.10	-1	7082..7918	-	278	162145850	-	GDI0007	-	putative transposase
5	 63.39	0	8862..9410	+	182	162145851	-	GDI0009	-	putative transposase
6	 60.10	-1	9488..10324	-	278	162145852	-	GDI0010	-	putative transposase
7	 54.09	-2	10431..10589	+	52	162145853	-	GDI0011	-	hypothetical protein
8	 61.78	0	10636..11433	+	265	162145854	-	GDI0012	-	putative transposase
9	 54.63	-1	11683..12762	-	359	162145855	-	GDI0013	-	putative transposase
10	 71.27	0	13191..14342	-	383	162145856	-	GDI0014	-	hypothetical protein
11	 65.50	0	14515..15372	+	285	162145857	-	GDI0015	-	putative shikimate dehydrogenase
12	 66.24	0	15489..16889	+	466	162145858	-	GDI0016	-	putative sugar transporter protein
13	 69.53	0	16892..17695	-	267	162145859	-	GDI0017	-	putative inorganic polyphosphate/ATP-NAD kinase
14	 70.04	0	17745..18575	-	276	162145860	-	GDI0018	-	Nitrilase/cyanide hydratase
15	 66.49	0	18821..19945	+	374	162145861	-	GDI0019	-	putative cation transporter protein
16	 70.35	0	19932..20828	-	298	162145862	serB	GDI0020	-	phosphoserine phosphatase
17	 72.77	+1	20859..21857	+	332	162145863	miaA	GDI0021	-	putative tRNA delta(2)-isopentenylpyrophosphate transferase
18	 68.31	0	21930..23756	+	608	162145864	ilvI	GDI0022	-	putative acetolactate synthase isozyme III large subunit
19	 67.64	0	23862..24377	+	171	162145865	ilvH	GDI0023	-	acetolactate synthase 3 regulatory subunit
20	 65.00	0	24420..25439	+	339	162145866	ilvC	GDI0024	-	ketol-acid reductoisomerase
21	 63.76	0	27606..28808	+	400	162145867	-	GDI0028	-	putative transposase
22	 60.59	0	29679..31751	-	690	162145868	-	GDI0029	-	putative transposase
23	 63.65	0	31748..32443	-	231	162145869	-	GDI0030	-	hypothetical protein
24	 71.63	0	32596..33099	-	167	162145870	-	GDI0031	-	hypothetical protein
25	 67.67	0	33169..33765	+	198	162145871	-	GDI0032	-	hypothetical protein
26	 65.06	0	34170..34793	+	207	162145872	btuR	GDI0033	-	putative cob(I)yrinic acid a,c-diamide adenosyltransferase
27	 71.53	0	34793..36271	+	492	162145873	cobQ	GDI0034	-	putative cobyric acid synthase
28	 71.58	0	36407..37423	+	338	162145874	cobD	GDI0035	-	putative threonine-phosphate decarboxylase
29	 71.67	0	37420..37959	+	179	162145875	-	GDI0036	-	putative phosphoglycerate mutase
30	 68.68	0	38238..39530	+	430	162145876	-	GDI0037	-	putative sugar transporter protein
31	 68.51	0	39551..41560	-	669	162145877	-	GDI0038	-	putative fusaric acid resistance protein
32	 71.48	0	41637..42653	+	338	162145878	-	GDI0039	-	hypothetical protein
33	 68.43	0	42702..43607	-	301	162145879	-	GDI0040	-	LysR family transcriptional regulator
34	 69.29	0	43636..44778	-	380	162145880	-	GDI0041	-	Outer membrane protein
35	 74.93	+1	44991..45329	-	112	162145881	-	GDI0042	-	hypothetical protein
36	 72.25	+1	45348..47138	-	596	162145882	-	GDI0043	-	carboxy-terminal processing protease
37	 73.27	+1	47138..49483	-	781	162145883	rnr	GDI0044	-	ribonuclease R
38	 69.62	0	49486..52260	-	924	162145884	topA	GDI0045	-	DNA topoisomerase I
39	 72.73	+1	52282..53469	-	395	162145885	dprA	GDI0046	-	putative DNA processing chain A
40	 72.46	+1	53466..54104	-	212	162145886	-	GDI0047	-	hypothetical protein
41	 74.48	+1	54101..55393	-	430	162145887	pyrC	GDI0048	-	putative dihydro-orotase protein
42	 69.46	0	55390..56355	-	321	162145888	pyrB	GDI0049	-	aspartate carbamoyltransferase catalytic subunit
43	 70.31	0	56352..57752	-	466	162145889	gltX	GDI0050	-	glutamyl-tRNA synthetase I
44	 76.37	+1	57935..60058	+	707	162145890	-	GDI0051	-	putative DNA uptake protein
45	 70.37	0	60062..60709	-	215	162145891	nth	GDI0052	-	putative endonuclease III
46	 70.26	0	60972..62837	+	621	162145892	-	GDI0053	-	putative ABC transporter
47	 61.38	0	62830..63453	+	207	162145893	-	GDI0054	-	hypothetical protein
48	 64.41	0	63515..63913	+	132	162145894	-	GDI0055	-	hypothetical protein
49	 58.45	-1	64320..64976	+	218	162145895	-	GDI0057	-	hypothetical protein
50	 60.48	0	65082..65372	-	96	162145896	-	GDI0058	-	hypothetical protein
51	 63.40	0	65376..66416	-	346	162145897	-	GDI0059	-	hypothetical protein
52	 64.38	0	66416..67072	-	218	162145898	-	GDI0060	-	hypothetical protein
53	 61.02	0	67081..68001	-	306	162145899	-	GDI0061	-	hypothetical protein
54	 65.08	0	68012..69835	-	607	162145900	-	GDI0062	-	hypothetical protein
55	 65.18	0	69832..70503	-	223	162145901	-	GDI0063	-	hypothetical protein
56	 64.89	0	70757..70981	+	74	162145902	-	GDI0064	-	putative virulence-associated protein
57	 63.75	0	70981..71391	+	136	162145903	-	GDI0065	-	hypothetical protein
58	 64.88	0	71552..73900	-	782	162145904	-	GDI0066	-	putative helicase protein
59	 66.15	0	73931..74317	-	128	162145905	-	GDI0067	-	putative histidine triad (HIT) protein
60	 67.80	0	74335..74862	-	175	162145906	hisE	GDI0068	-	putative phosphoribosyl-ATP pyrophosphatase
61	 70.27	0	74904..75680	-	258	162145907	hisF	GDI0069	-	putative imidazole glycerol phosphate synthase subunit hisF
62	 70.28	0	75680..77035	-	451	162145908	hisA	GDI0070	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
63	 70.09	0	77032..77703	-	223	162145909	hisH	GDI0071	-	imidazole glycerol phosphate synthase subunit HisH
64	 72.92	+1	77706..78089	-	127	162145910	-	GDI0072	-	hypothetical protein
65	 66.83	0	78086..78682	-	198	162145911	hisB	GDI0073	-	putative imidazoleglycerol-phosphate dehydratase
66	 67.91	0	78856..79497	+	213	162145912	-	GDI0074	-	putative nitroreductase family protein
67	 69.04	0	79521..80699	+	392	162145913	-	GDI0075	-	hypothetical protein
68	 66.05	0	88090..88251	-	53	162145914	-	GDI0077	-	hypothetical protein
69	 60.07	-1	90932..92401	-	489	162145915	katA	GDI0079	-	catalase
70	 63.53	0	92457..93890	-	477	162145916	calB	GDI0080	-	putative coniferyl aldehyde dehydrogenase
71	 63.80	0	93970..94806	-	278	162145917	cpo	GDI0081	-	alpha/beta hydrolase, chloride peroxidase
72	 62.36	0	94859..95764	-	301	162145918	-	GDI0082	-	hypothetical protein
73	 67.13	0	95770..97077	-	435	162145919	-	GDI0083	-	putative flavin oxidoreductase
74	 64.98	0	97178..97711	+	177	162145920	-	GDI0084	-	MerR family transcriptional regulator
75	 62.43	0	97697..98380	-	227	162145921	-	GDI0085	-	DJ-1/PfpI family protein
76	 61.26	0	98673..99875	+	400	162145922	-	GDI0086	-	hypothetical protein
77	 60.84	0	99959..100387	+	142	162145923	-	GDI0087	-	hypothetical protein
78	 69.25	0	100387..101433	+	348	162145924	-	GDI0088	-	hypothetical protein
79	 65.59	0	101756..102682	+	308	162145925	-	GDI0089	-	hypothetical protein
80	 60.95	0	102692..102901	-	69	162145926	-	GDI0090	-	hypothetical protein
81	 64.33	0	102994..103506	+	170	162145927	-	GDI0091	-	hypothetical protein
82	 65.41	0	103540..104097	-	185	162145928	-	GDI0092	-	hypothetical protein
83	 65.61	0	104094..104660	-	188	162145929	-	GDI0093	-	hypothetical protein
84	 57.93	-1	104786..105094	-	102	162145930	-	GDI0094	-	hypothetical protein
85	 62.46	0	105087..105371	+	94	162145931	-	GDI0095	-	hypothetical protein
86	 69.89	0	105383..105661	+	92	162145932	-	GDI0096	-	hypothetical protein
87	 66.40	0	105725..106093	+	122	162145933	-	GDI0097	-	hypothetical protein
88	 66.20	0	106131..106559	+	142	162145934	-	GDI0098	-	hypothetical protein
89	 65.00	0	106570..107229	-	219	162145935	-	GDI0099	-	hypothetical protein
90	 64.72	0	107266..107676	-	136	162145936	-	GDI0100	-	hypothetical protein
91	 64.03	0	107699..108001	+	100	162145937	-	GDI0101	-	hypothetical protein
92	 71.39	0	108067..108828	+	253	162145938	-	GDI0102	-	hypothetical protein
93	 68.53	0	108872..110266	+	464	162145939	-	GDI0103	-	putative DNA polymerase protein
94	 64.08	0	110263..113427	+	1054	162145940	dnaE	GDI0104	-	putative DNA polymerase III alpha subunit
95	 66.67	0	113597..113890	+	97	162145941	-	GDI0105	-	putative transcriptor regulator
96	 61.50	0	113890..114954	+	354	162145942	-	GDI0106	-	putative replication protein
97	 72.35	+1	114957..115589	+	210	162145943	-	GDI0107	-	putative cobyrinic acid a,c-diamide synthase
98	 65.99	0	115586..116329	+	247	162145944	-	GDI0108	-	putative DNA methylase N-4/N-6
99	 64.30	0	116565..117029	+	154	162145945	-	GDI0109	-	hypothetical protein
100	 66.67	0	117026..117568	+	180	162145946	traF	GDI0110	-	putative conjugal transfer protein traF
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.