IslandPath Analysis: Anabaena variabilis ATCC 29413



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.19   STD DEV: 4.00
Anabaena variabilis ATCC 29413, complete genome - 1..6365727
5043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.29	0	119..1501	+	460	75906226	dnaA	Ava_0001	-	chromosomal replication initiation protein
2	 42.70	0	1919..3082	+	387	75906227	-	Ava_0002	-	DNA polymerase III subunit beta
3	 44.59	0	3177..4118	-	313	75906228	-	Ava_0003	-	binding-protein dependent transport system inner membrane protein
4	 36.24	-1	4122..5084	-	320	75906229	-	Ava_0004	-	binding-protein dependent transport system inner membrane protein
5	 43.41	0	5435..6238	-	267	75906230	-	Ava_0005	-	methyltransferase
6	 39.51	0	6463..6915	+	150	75906231	-	Ava_0006	-	hypothetical protein
7	 36.57	-1	6923..7354	+	143	75906232	-	Ava_0007	-	NUDIX hydrolase
8	 36.73	-1	7568..7861	+	97	75906233	-	Ava_0008	-	hypothetical protein
9	 39.63	0	8217..8645	-	142	75906234	-	Ava_0009	-	hypothetical protein
10	 39.17	0	8850..9500	+	216	75906235	-	Ava_0010	-	PadR family transcriptional regulator
11	 38.46	0	9853..10281	+	142	75906236	-	Ava_0011	-	hypothetical protein
12	 39.35	0	10376..11389	-	337	75906237	-	Ava_0012	-	Serine/threonine protein kinase
13	 47.07	+1	11732..12634	-	300	75906238	-	Ava_0013	-	Alpha/beta hydrolase fold
14	 43.49	0	12845..13366	+	173	75906239	-	Ava_0014	-	hypothetical protein
15	 35.32	-1	13677..13877	+	66	75906240	-	Ava_0015	-	hypothetical protein
16	 47.02	+1	13928..15118	+	396	75906241	-	Ava_0016	-	Iron-containing alcohol dehydrogenase
17	 48.68	+1	15115..16326	+	403	75906242	-	Ava_0017	-	aspartate aminotransferase
18	 40.67	0	16356..16682	+	108	75906243	-	Ava_0018	-	ArsR family transcriptional regulator
19	 41.10	0	17049..17357	-	102	75906244	-	Ava_0019	-	hypothetical protein
20	 41.76	0	17810..18580	+	256	75906245	-	Ava_0020	-	TPR repeat-containing protein
21	 42.24	0	18581..19231	+	216	75906246	-	Ava_0021	-	TenA family transcription regulator
22	 42.70	0	19248..20486	-	412	75906247	-	Ava_0022	-	glycosyl transferase family protein
23	 46.39	+1	20934..22625	+	563	75906248	-	Ava_0023	-	dihydroxy-acid dehydratase
24	 36.74	-1	23031..24203	-	390	75906249	-	Ava_0024	-	periplasmic sensor Signal transduction histidine kinase
25	 35.23	-1	24781..25518	+	245	75906250	-	Ava_0025	-	hypothetical protein
26	 41.00	0	25498..26658	-	386	75906251	-	Ava_0026	-	FAD dependent oxidoreductase
27	 46.67	+1	26778..27077	-	99	75906252	-	Ava_0027	-	RNA-binding region RNP-1
28	 45.40	0	27274..27447	-	57	75906253	-	Ava_0028	-	hypothetical protein
29	 42.82	0	27463..27873	-	136	75906254	-	Ava_0029	-	hypothetical protein
30	 48.22	+1	28254..30899	+	881	75906255	-	Ava_0030	-	DNA topoisomerase I
31	 47.10	+1	31205..31342	+	45	75906256	-	Ava_0031	-	hypothetical protein
32	 44.22	0	31362..31811	+	149	75906257	-	Ava_0032	-	3-dehydroquinate dehydratase
33	 41.24	0	31992..32927	+	311	75906258	-	Ava_0033	-	hypothetical protein
34	 43.82	0	33198..35723	+	841	75906259	-	Ava_0034	-	metal dependent phosphohydrolase
35	 41.87	0	35758..36249	-	163	75906260	-	Ava_0035	-	hypothetical protein
36	 39.87	0	36622..38565	+	647	75906261	-	Ava_0036	-	UDP-galactopyranose mutase
37	 37.46	-1	38890..39180	-	96	75906262	-	Ava_0037	-	hypothetical protein
38	 40.10	0	39537..39920	+	127	75906263	-	Ava_0038	-	hypothetical protein
39	 43.35	0	40066..45126	-	1686	75906264	-	Ava_0039	-	peptidase C14, caspase catalytic subunit p20
40	 43.67	0	45762..46496	+	244	75906265	-	Ava_0040	-	hypothetical protein
41	 41.64	0	46754..47752	-	332	75906266	-	Ava_0041	-	hypothetical protein
42	 38.04	-1	47745..49103	-	452	75906267	-	Ava_0042	-	radical SAM family protein
43	 42.11	0	49261..49602	-	113	75906268	-	Ava_0043	-	hypothetical protein
44	 39.46	0	50145..51302	+	385	75906269	-	Ava_0044	-	thiosulphate-binding protein
45	 36.03	-1	51352..52353	+	333	75906270	-	Ava_0045	-	phosphate binding protein
46	 39.28	0	52424..53365	+	313	75906271	-	Ava_0046	-	phosphate ABC transporter permease
47	 39.89	0	53372..54271	+	299	75906272	-	Ava_0047	-	phosphate ABC transporter permease
48	 38.77	0	54333..55160	+	275	75906273	-	Ava_0048	-	phosphate ABC transporter permease
49	 43.21	0	55168..58002	-	944	75906274	-	Ava_0049	-	HEAT repeat-containing PBS lyase
50	 37.63	-1	58205..58576	+	123	75906275	-	Ava_0050	-	hypothetical protein
51	 44.37	0	58987..60417	+	476	75906276	-	Ava_0051	-	hypothetical protein
52	 44.61	0	60546..61724	+	392	75906277	-	Ava_0052	-	hypothetical protein
53	 40.27	0	61940..64375	+	811	75906278	-	Ava_0053	-	filamentous haemagglutinin-like
54	 45.11	0	64368..67025	+	885	75906279	-	Ava_0054	-	TPR repeat-containing protein
55	 36.20	-1	67154..68929	+	591	75906280	-	Ava_0055	-	PAS/PAC sensor Signal transduction histidine kinase
56	 37.27	-1	68966..69448	-	160	75906281	-	Ava_0056	-	peptidoglycan binding domain-containing protein
57	 44.34	0	70214..71530	+	438	75906282	-	Ava_0057	-	glutamate-5-semialdehyde dehydrogenase
58	 37.64	-1	72155..73198	+	347	75906283	-	Ava_0058	-	response regulator receiver domain-containing protein
59	 37.30	-1	73215..73592	+	125	75906284	-	Ava_0059	-	response regulator receiver domain-containing protein
60	 33.53	-2	73597..74106	+	169	75906285	-	Ava_0060	-	CheW protein
61	 43.82	0	74149..76407	+	752	75906286	-	Ava_0061	-	chemotaxis sensory transducer
62	 41.54	0	76513..79437	+	974	75906287	-	Ava_0062	-	CheA Signal transduction histidine Kinases (STHK)
63	 41.13	0	79620..80324	-	234	75906288	-	Ava_0063	-	serine/threonine protein kinase
64	 41.87	0	80617..85761	-	1714	75906289	-	Ava_0064	-	Signal transduction histidine kinase
65	 32.66	-2	86470..87060	+	196	75906290	-	Ava_0065	-	response regulator receiver domain-containing protein
66	 39.07	0	87086..88219	+	377	75906291	-	Ava_0066	-	response regulator receiver sensor signal transduction histidine kinase
67	 33.29	-2	88691..91012	+	773	75906292	-	Ava_0067	-	signal transduction protein
68	 45.87	0	91211..93052	-	613	75906293	-	Ava_0068	-	AAA ATPase, central region
69	 37.47	-1	93095..95002	-	635	75906294	-	Ava_0069	-	anion-transporting ATPase
70	 34.65	-1	95040..95723	-	227	75906295	-	Ava_0070	-	hypothetical protein
71	 36.51	-1	95876..96190	+	104	75906296	-	Ava_0071	-	hypothetical protein
72	 32.80	-2	96315..96692	-	125	75906297	-	Ava_0072	-	gas vesicle G
73	 37.01	-1	96706..97440	-	244	75906298	-	Ava_0073	-	gas vesicle synthesis GvpLGvpF
74	 38.61	0	97546..98019	-	157	75906299	-	Ava_0074	-	gas vesicle protein GVPa
75	 39.82	0	98163..98609	-	148	75906300	-	Ava_0075	-	gas vesicle protein GVPa
76	 42.16	0	98606..99862	-	418	75906301	-	Ava_0076	-	ATPase associated with various cellular activities
77	 42.05	0	100289..100678	-	129	75906302	-	Ava_0077	-	gas vesicle protein GVPc
78	 41.67	0	100886..101101	-	71	75906303	-	Ava_0078	-	gas vesicle synthesis protein GvpA
79	 41.67	0	101206..101421	-	71	75906304	-	Ava_0079	-	gas vesicle synthesis protein GvpA
80	 40.07	0	101885..102151	+	88	75906305	-	Ava_0080	-	hypothetical protein
81	 40.06	0	102908..104155	+	415	75906306	-	Ava_0081	-	hypothetical protein
82	 40.13	0	104299..106608	+	769	75906307	-	Ava_0082	-	hypothetical protein
83	 32.98	-2	106817..112159	+	1780	75906308	-	Ava_0083	-	Serine/threonine protein kinase and Signal transduction histidine kinase (STHK) with GAF sensor
84	 39.54	0	112628..114013	+	461	75906309	-	Ava_0084	-	Serine/threonine protein kinase
85	 36.77	-1	114051..114953	-	300	75906310	-	Ava_0085	-	sensor protein
86	 39.24	0	115396..115920	+	174	75906311	-	Ava_0086	-	hypothetical protein
87	 44.29	0	116031..116459	-	142	75906312	-	Ava_0087	-	hypothetical protein
88	 45.29	0	116511..117380	-	289	75906313	-	Ava_0088	-	HtpX-2 peptidase
89	 42.46	0	118326..119957	+	543	75906314	-	Ava_0089	-	Sodium/hydrogen exchanger
90	 45.47	0	120064..121200	+	378	75906315	-	Ava_0090	-	glycosyl transferase, group 1
91	 40.35	0	121274..123853	+	859	75906316	-	Ava_0091	-	adenylate/guanylate cyclase
92	 40.35	0	124058..124342	-	94	75906317	-	Ava_0092	-	hypothetical protein
93	 42.14	0	125194..125931	+	245	75906318	-	Ava_0093	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
94	 47.72	+1	126211..128727	+	838	75906319	-	Ava_0094	-	surface antigen variable number
95	 46.98	+1	128861..129703	+	280	75906320	lpxC	Ava_0095	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
96	 44.77	0	129780..130295	+	171	75906321	fabZ	Ava_0096	-	(3R)-hydroxymyristoyl-ACP dehydratase
97	 46.52	+1	130544..131362	+	272	75906322	-	Ava_0097	-	UDP-N-acetylglucosamine acyltransferase
98	 44.94	0	131492..132646	+	384	75906323	lpxB	Ava_0098	-	lipid-A-disaccharide synthase
99	 34.67	-1	132913..133137	-	74	75906324	-	Ava_0099	-	hypothetical protein
100	 43.25	0	133254..133838	-	194	75906325	-	Ava_0100	-	hypothetical protein
42.19	MEAN

4.00	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.