IslandPath Analysis: Escherichia coli O157:H7 EDL933



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.38   STD DEV: 5.88
Escherichia coli O157:H7 EDL933, complete genome - 1..5528445
5312 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.19	0	190..273	+	27	15799681	thrL	Z0001	-	thr operon leader peptide
2	 52.82	0	354..2816	+	820	15799682	thrA	Z0002	-	bifunctional aspartokinase I/homeserine dehydrogenase I
3	 56.27	+1	2818..3750	+	310	15799683	thrB	Z0003	-	homoserine kinase
4	 53.15	0	3751..5037	+	428	15799684	thrC	Z0004	-	threonine synthase
5	 53.87	0	5251..5547	+	98	15799685	-	Z0005	-	hypothetical protein
6	 48.91	0	5700..6476	-	258	15799686	yaaA	Z0006	-	hypothetical protein
7	 52.97	0	6546..7976	-	476	15799687	yaaJ	Z0007	-	inner membrane transport protein
8	 51.68	0	8255..9208	+	317	15799688	talB	Z0008	-	transaldolase B
9	 53.91	0	9323..9910	+	195	15799689	mogA	Z0009	-	molybdenum cofactor biosynthesis protein
10	 52.73	0	9945..10511	-	188	15799690	yaaH	Z0010	-	hypothetical protein
11	 50.98	0	10660..11373	-	237	15799691	-	Z0011	-	hypothetical protein
12	 48.89	0	11399..11803	-	134	15799693	yaaI	Z0013	-	hypothetical protein
13	 51.38	0	12180..14096	+	638	15799694	dnaK	Z0014	-	molecular chaperone DnaK
14	 55.08	0	14185..15315	+	376	15799695	dnaJ	Z0015	-	chaperone protein DnaJ
15	 50.48	0	15419..15628	-	69	15799696	gef	Z0016	-	Gef protein interferes with membrane function when in excess
16	 51.33	0	16157..17323	+	388	15799697	nhaA	Z0018	-	pH-dependent sodium/proton antiporter
17	 47.57	0	17383..18288	+	301	15799698	nhaR	Z0019	-	transcriptional activator NhaR
18	 37.34	-2	18326..18949	-	207	15799699	-	Z0020	-	hypothetical protein
19	 37.00	-2	18960..19286	-	108	15799700	-	Z0021	-	hypothetical protein
20	 41.00	-1	19299..21749	-	816	15799701	-	Z0022	-	putative usher protein
21	 36.55	-2	21762..22445	-	227	15799702	-	Z0023	-	putative chaperone protein
22	 39.14	-1	22495..23028	-	177	15799703	-	Z0024	-	putative type-1 fimbrial protein
23	 32.28	-2	23330..24751	-	473	15799704	-	Z0025	-	hypothetical protein
24	 46.59	0	25221..25484	-	87	15799705	rpsT	Z0027	-	30S ribosomal protein S20
25	 48.00	0	25587..25811	+	74	15799706	-	Z0028	-	hypothetical protein
26	 53.50	0	25819..26760	+	313	15799707	ribF	Z0029	-	bifunctional riboflavin kinase/FMN adenylyltransferase
27	 55.70	0	26803..29619	+	938	15799708	ileS	Z0030	-	isoleucyl-tRNA synthetase
28	 53.33	0	29619..30113	+	164	15799709	lspA	Z0031	-	lipoprotein signal peptidase
29	 55.33	0	30201..30650	+	149	15799710	slpA	Z0033	-	FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a rotamase)
30	 55.21	0	30652..31602	+	316	15799711	ispH	Z0034	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
31	 55.63	0	31668..32582	+	304	15799712	yaaF	Z0035	-	ribonucleoside hydrolase RihC
32	 52.92	0	32749..33570	+	273	15799713	dapB	Z0036	-	dihydrodipicolinate reductase
33	 53.44	0	34026..35174	+	382	15799714	carA	Z0037	-	carbamoyl phosphate synthase small subunit
34	 55.87	0	35192..38413	+	1073	15799715	carB	Z0038	-	carbamoyl phosphate synthase large subunit
35	 35.62	-2	38421..38639	-	72	15799716	-	Z0039	-	hypothetical protein
36	 45.96	0	38674..39069	+	131	161367661	-	Z0040	-	DNA-binding transcriptional activator CaiF
37	 54.90	0	39188..39799	-	203	15799718	caiE	Z0041	-	carnitine operon protein CaiE
38	 52.46	0	39784..40677	-	297	15799719	caiD	Z0042	-	carnitinyl-CoA dehydratase
39	 50.61	0	40678..42246	-	522	15799720	caiC	Z0043	-	putative crotonobetaine/carnitine-CoA ligase
40	 52.46	0	42305..43522	-	405	15799721	caiB	Z0044	-	crotonobetainyl-CoA:carnitine CoA-transferase
41	 53.81	0	43651..44793	-	380	15799722	caiA	Z0045	-	crotonobetainyl-CoA dehydrogenase
42	 51.68	0	44824..46338	-	504	15799723	caiT	Z0046	-	L-carnitine/gamma-butyrobetaine antiporter
43	 52.14	0	46817..47587	+	256	161367660	fixA	Z0047	-	putative electron transfer flavoprotein FixA
44	 55.94	0	47602..48543	+	313	15799725	fixB	Z0048	-	putative electron transfer flavoprotein FixB
45	 54.78	0	48594..49880	+	428	15799726	fixC	Z0049	-	putative oxidoreductase FixC
46	 56.94	+1	49877..50164	+	95	15799727	fixX	Z0050	-	putative ferredoxin
47	 53.38	0	50222..51553	+	443	15799728	yaaU	Z0051	-	putative transport protein
48	 54.80	0	51661..52191	+	176	15799729	yabF	Z0052	-	glutathione-regulated potassium-efflux system ancillary protein KefF
49	 55.82	0	52184..54046	+	620	15799730	kefC	Z0053	-	glutathione-regulated potassium-efflux system protein KefC
50	 53.33	0	54238..54717	+	159	15799731	folA	Z0055	-	dihydrofolate reductase
51	 48.72	0	54803..55036	+	77	15799732	-	Z0056	-	putative antitoxin of gyrase inhibiting toxin-antitoxin system
52	 45.71	0	55039..55353	+	104	15799733	-	Z0057	-	putative toxin of gyrase inhibiting toxin-antitoxin system
53	 55.95	0	55350..56198	-	282	15799734	apaH	Z0058	-	diadenosine tetraphosphatase
54	 51.85	0	56205..56582	-	125	15799735	apaG	Z0059	-	ApaG
55	 53.16	0	56585..57406	-	273	15799736	ksgA	Z0060	-	dimethyladenosine transferase
56	 56.16	0	57403..58392	-	329	15799737	pdxA	Z0061	-	4-hydroxythreonine-4-phosphate dehydrogenase
57	 53.77	0	58392..59678	-	428	15799738	surA	Z0062	-	peptidyl-prolyl cis-trans isomerase SurA
58	 51.34	0	59731..62085	-	784	15799739	imp	Z0063	-	organic solvent tolerance protein
59	 52.82	0	62340..63155	+	271	15799740	djlA	Z0064	-	DNA-J like membrane chaperone protein
60	 41.83	-1	63450..64202	+	250	15799741	-	Z0065	-	hypothetical protein
61	 54.09	0	64620..65279	-	219	15799742	yabO	Z0066	-	23S rRNA/tRNA pseudouridine synthase A
62	 55.01	0	65291..68197	-	968	15799743	-	Z0067	-	ATP-dependent helicase HepA
63	 55.57	0	68361..70712	-	783	15799744	polB	Z0068	-	DNA polymerase II
64	 54.89	0	70787..71482	-	231	15799745	araD	Z0069	-	L-ribulose-5-phosphate 4-epimerase
65	 55.62	0	71682..73184	-	500	15799746	araA	Z0070	-	L-arabinose isomerase
66	 57.97	+1	73195..74895	-	566	15799747	araB	Z0072	-	ribulokinase
67	 52.90	0	75234..76112	+	292	15799748	araC	Z0073	-	DNA-binding transcriptional regulator AraC
68	 54.38	0	76198..76962	+	254	15799749	yabI	Z0074	-	hypothetical protein
69	 56.94	+1	77049..77747	-	232	15799750	thiQ	Z0075	-	thiamine transporter ATP-binding subunit
70	 58.97	+1	77731..79341	-	536	15799751	thiP	Z0076	-	thiamine transporter membrane protein
71	 52.95	0	79317..80300	-	327	15799752	tbpA	Z0077	-	thiamine transporter substrate binding subunit
72	 43.16	-1	80672..81241	+	189	15799753	-	Z0078	-	hypothetical protein
73	 55.21	0	81470..83128	-	552	15799754	yabN	Z0079	-	transcriptional regulator SgrR
74	 52.31	0	83456..84061	-	201	15799755	leuD	Z0080	-	isopropylmalate isomerase small subunit
75	 55.67	0	84072..85472	-	466	15799756	leuC	Z0081	-	isopropylmalate isomerase large subunit
76	 54.85	0	85475..86566	-	363	161367659	leuB	Z0082	-	3-isopropylmalate dehydrogenase
77	 53.12	0	86566..88137	-	523	15799758	leuA	Z0083	-	2-isopropylmalate synthase
78	 47.13	0	88230..88316	-	28	15799759	leuL	Z0084	-	leu operon leader peptide
79	 45.79	0	88956..89918	+	320	15799760	leuO	Z0086	-	leucine transcriptional activator
80	 52.75	0	90236..91960	+	574	161367658	ilvI	Z0087	-	acetolactate synthase 3 catalytic subunit
81	 49.39	0	91963..92454	+	163	15799762	ilvH	Z0088	-	acetolactate synthase 3 regulatory subunit
82	 44.83	0	92466..92552	+	28	15799763	fruL	Z0089	-	fruR leader peptide
83	 54.83	0	92634..93638	+	334	15799764	fruR	Z0090	-	DNA-binding transcriptional regulator FruR
84	 52.29	0	94240..94698	+	152	15799765	yabB	Z0091	-	cell division protein MraZ
85	 54.88	0	94700..95641	+	313	15799766	mraW	Z0092	-	S-adenosyl-methyltransferase MraW
86	 50.55	0	95638..96003	+	121	15799767	ftsL	Z0093	-	cell division protein FtsL
87	 53.65	0	96019..97785	+	588	15799768	ftsI	Z0094	-	septum formation; penicillin-binding protein 3; peptidoglycan synthetase
88	 56.18	0	97772..99259	+	495	15799769	murE	Z0095	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
89	 54.75	0	99256..100614	+	452	15799770	murF	Z0096	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
90	 53.09	0	100608..101690	+	360	15799771	mraY	Z0097	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
91	 55.20	0	101693..103009	+	438	15799772	murD	Z0098	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
92	 52.85	0	103009..104253	+	414	15799773	ftsW	Z0099	-	cell division protein FtsW
93	 55.99	0	104250..105317	+	355	15799774	murG	Z0100	-	N-acetylglucosaminyl transferase
94	 54.54	0	105371..106846	+	491	15799775	murC	Z0101	-	UDP-N-acetylmuramate--L-alanine ligase
95	 51.68	0	106839..107759	+	306	15799776	ddl	Z0102	-	D-alanine--D-alanine ligase
96	 53.55	0	107761..108591	+	276	15799777	ftsQ	Z0103	-	cell division protein FtsQ
97	 52.26	0	108588..109850	+	420	15799778	ftsA	Z0104	-	cell division protein FtsA
98	 54.25	0	109911..111062	+	383	15799779	ftsZ	Z0105	-	cell division protein FtsZ
99	 51.20	0	111163..112080	+	305	15799780	lpxC	Z0106	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
100	 54.58	0	112311..112823	+	170	161367657	yacA	Z0107	-	SecA regulator SecM
50.38	MEAN

5.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.