IslandPath Analysis: Deinococcus geothermalis DSM 11300



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.82   STD DEV: 3.70
Deinococcus geothermalis DSM 11300, complete genome - 1..2467205
2335 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.67	-2	222..1634	+	470	94984110	-	Dgeo_0001	-	chromosomal replication initiator protein DnaA
2	 43.75	-2	1599..1838	-	79	94984111	-	Dgeo_0002	-	hypothetical protein
3	 62.05	-1	2025..3107	+	360	94984112	-	Dgeo_0003	-	DNA polymerase III, beta subunit
4	 64.38	0	3245..4513	+	422	94984113	-	Dgeo_0004	-	phosphopyruvate hydratase
5	 62.87	-1	4600..6048	+	482	94984114	-	Dgeo_0005	-	pyruvate kinase
6	 65.14	0	6295..7536	-	413	94984115	-	Dgeo_0006	-	tyrosyl-tRNA synthetase
7	 69.40	0	7665..8285	+	206	94984116	-	Dgeo_0007	-	MOSC domain-containing protein
8	 64.31	0	8301..8852	+	183	94984117	-	Dgeo_0008	-	hypothetical protein
9	 69.17	0	8833..9510	+	225	94984118	-	Dgeo_0009	-	hypothetical protein
10	 63.70	0	9612..11432	-	606	94984119	-	Dgeo_0010	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
11	 69.07	0	11803..13008	-	401	94984120	-	Dgeo_0011	-	methionine gamma-lyase
12	 67.59	0	13036..13686	-	216	94984121	-	Dgeo_0012	-	hypothetical protein
13	 61.75	-1	13862..14044	+	60	94984122	rpmF	Dgeo_0013	-	50S ribosomal protein L32
14	 72.14	+1	14304..15089	+	261	94984123	-	Dgeo_0014	-	response regulator receiver/SARP domain-containing protein
15	 69.26	0	15138..15407	+	89	94984124	-	Dgeo_0015	-	hypothetical protein
16	 65.95	0	15559..16119	+	186	94984125	-	Dgeo_0016	-	cytochrome c oxidase, subunit II
17	 64.57	0	16130..17893	+	587	94984126	-	Dgeo_0017	-	cytochrome c oxidase, subunit I
18	 69.78	0	17893..18309	+	138	94984127	-	Dgeo_0018	-	cytochrome c, class I
19	 72.97	+1	18407..19438	+	343	94984128	-	Dgeo_0019	-	A/G-specific adenine glycosylase
20	 66.19	0	19494..20324	+	276	94984129	-	Dgeo_0020	-	undecaprenyl diphosphate synthase
21	 71.61	+1	20373..22334	+	653	94984130	-	Dgeo_0021	-	HRDC
22	 66.67	0	22331..22666	-	111	94984131	-	Dgeo_0022	-	hypothetical protein
23	 70.19	0	22666..23487	-	273	94984132	-	Dgeo_0023	-	ABC transporter related
24	 71.08	+1	23480..24499	-	339	94984133	-	Dgeo_0024	-	transport system permease protein
25	 65.98	0	24503..25372	-	289	94984134	-	Dgeo_0025	-	periplasmic binding protein
26	 67.29	0	25679..26323	-	214	94984135	-	Dgeo_0026	-	phospholipid/glycerol acyltransferase
27	 68.25	0	26392..26643	-	83	94984136	-	Dgeo_0027	-	hypothetical protein
28	 67.51	0	27484..27840	-	118	94984137	-	Dgeo_0029	-	hypothetical protein
29	 70.37	0	27906..28526	-	206	94984138	-	Dgeo_0030	-	hypothetical protein
30	 69.77	0	28523..29392	-	289	94984139	-	Dgeo_0031	-	hypothetical protein
31	 71.42	+1	29584..30993	+	469	94984140	-	Dgeo_0032	-	ribonuclease II
32	 63.92	0	31038..31328	+	96	94984141	-	Dgeo_0033	-	hypothetical protein
33	 66.28	0	31472..32503	+	343	94984142	-	Dgeo_0034	-	peptidyl-arginine deiminase
34	 67.35	0	32488..33663	+	391	94984143	-	Dgeo_0035	-	hypothetical protein
35	 64.86	0	33677..34561	+	294	94984144	-	Dgeo_0036	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
36	 69.91	0	34598..35398	-	266	94984145	-	Dgeo_0037	-	tRNA pseudouridine synthase A
37	 68.88	0	35401..36393	+	330	94984146	-	Dgeo_0038	-	peptidase M23B
38	 70.18	0	36398..36625	+	75	94984147	-	Dgeo_0039	-	hypothetical protein
39	 69.34	0	36626..37411	-	261	94984148	-	Dgeo_0040	-	stationary-phase survival protein SurE
40	 66.34	0	37477..38694	-	405	94984149	-	Dgeo_0041	-	alcohol dehydrogenase GroES-like protein
41	 68.84	0	38691..39425	-	244	94984150	-	Dgeo_0042	-	cyclase/dehydrase
42	 61.38	-1	39684..40118	+	144	94984151	-	Dgeo_0043	-	response regulator receiver protein
43	 67.28	0	40286..40609	+	107	94984152	-	Dgeo_0044	-	multisubunit Na+/H+ antiporter MnhE subunit-like protein
44	 61.66	-1	40596..41294	-	232	94984153	-	Dgeo_0045	-	hypothetical protein
45	 67.34	0	41414..42151	+	245	94984154	-	Dgeo_0046	-	polysaccharide deacetylase
46	 68.60	0	42215..42886	-	223	94984155	-	Dgeo_0047	-	hypothetical protein
47	 68.65	0	43033..44091	+	352	94984156	-	Dgeo_0048	-	permease YjgP/YjgQ
48	 68.66	0	44102..45205	+	367	94984157	-	Dgeo_0049	-	permease YjgP/YjgQ
49	 68.36	0	45266..46681	+	471	94984158	-	Dgeo_0050	-	cyclopropane-fatty-acyl-phospholipid synthase
50	 68.51	0	46701..48812	-	703	94984159	-	Dgeo_0051	-	phosphate acetyltransferase
51	 69.44	0	48809..49996	-	395	94984160	-	Dgeo_0052	-	acetate kinase
52	 69.78	0	50064..50513	-	149	94984161	-	Dgeo_0053	-	hypothetical protein
53	 70.85	+1	50524..52458	-	644	94984162	-	Dgeo_0054	-	hypothetical protein
54	 70.25	0	52487..54076	-	529	94984163	-	Dgeo_0055	-	hypothetical protein
55	 66.81	0	54073..54783	-	236	94984164	-	Dgeo_0056	-	roadblock/LC7 domain-contain protein
56	 66.92	0	54859..56049	+	396	94984165	-	Dgeo_0057	-	pyridoxal phosphate-dependent acyltransferase, putative
57	 68.06	0	56125..56844	+	239	94984166	-	Dgeo_0058	-	ubiquinone/menaquinone biosynthesis methyltransferases
58	 68.41	0	57092..58465	+	457	94984167	-	Dgeo_0059	-	Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
59	 71.97	+1	58462..59178	+	238	94984168	-	Dgeo_0060	-	HAD family hydrolase
60	 61.32	-1	59257..59499	+	80	94984169	-	Dgeo_0061	-	hypothetical protein
61	 69.07	0	59640..60263	+	207	94984170	-	Dgeo_0062	-	phosphoglycerate mutase
62	 67.58	0	60394..61812	-	472	94984171	-	Dgeo_0063	-	amidophosphoribosyltransferase
63	 68.36	0	61809..64049	-	746	94984172	-	Dgeo_0064	-	phosphoribosylformylglycinamidine synthase II
64	 66.67	0	64046..64714	-	222	94984173	-	Dgeo_0065	-	phosphoribosylformylglycinamidine synthase I
65	 61.63	-1	64711..64968	-	85	94984174	-	Dgeo_0066	-	phosphoribosylformylglycinamidine synthetase PurS
66	 64.05	0	65028..65753	-	241	94984175	-	Dgeo_0067	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
67	 72.07	+1	66048..66899	-	283	94984176	-	Dgeo_0068	-	HemK family modification methylase
68	 71.24	+1	66937..67527	-	196	94984177	-	Dgeo_0069	-	single-stranded nucleic acid binding R3H
69	 66.50	0	67615..68199	-	194	94984178	-	Dgeo_0070	-	peptidylprolyl isomerase
70	 68.88	0	68257..69522	-	421	94984179	-	Dgeo_0071	-	peptidase M29, aminopeptidase II
71	 69.05	0	69773..70234	-	153	94984180	-	Dgeo_0072	-	tRNA/rRNA methyltransferase (SpoU)
72	 68.50	0	70231..70722	-	163	94984181	-	Dgeo_0073	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
73	 70.99	+1	70807..71430	-	207	94984182	-	Dgeo_0074	-	hypothetical protein
74	 69.70	0	71427..72053	-	208	94984183	-	Dgeo_0075	-	NUDIX hydrolase
75	 64.87	0	72291..72848	-	185	94984184	-	Dgeo_0076	-	DinB
76	 69.86	0	72893..73894	-	333	94984185	-	Dgeo_0077	-	dihydrouridine synthase, DuS
77	 69.03	0	74053..74559	+	168	94984186	-	Dgeo_0078	-	GCN5-related N-acetyltransferase
78	 70.13	0	74592..75341	+	249	94984187	-	Dgeo_0079	-	acetylglutamate kinase
79	 69.29	0	75346..75954	-	202	94984188	-	Dgeo_0080	-	ribosomal protein N-acetyltransferase, putative
80	 72.13	+1	75968..77083	-	371	94984189	-	Dgeo_0081	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
81	 70.97	+1	77080..77613	-	177	94984190	-	Dgeo_0082	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
82	 71.11	+1	77636..78850	+	404	94984191	-	Dgeo_0083	-	FolC bifunctional protein
83	 66.67	0	79358..79795	+	145	94984192	-	Dgeo_0084	-	hypothetical protein
84	 65.96	0	80110..80535	-	141	94984193	-	Dgeo_0085	-	hypothetical protein
85	 63.13	0	80725..81318	+	197	94984194	-	Dgeo_0086	-	hypothetical protein
86	 67.26	0	81377..82045	+	222	94984195	-	Dgeo_0087	-	two component transcriptional regulator
87	 67.78	0	82042..83121	+	359	94984196	-	Dgeo_0088	-	periplasmic sensor signal transduction histidine kinase
88	 66.95	0	83147..85648	-	833	94984197	-	Dgeo_0089	-	ATPase, P type cation/copper-transporter
89	 63.47	0	85816..86034	+	72	94984198	-	Dgeo_0090	-	heavy metal transport/detoxification protein
90	 64.06	0	86034..86378	+	114	94984199	-	Dgeo_0091	-	hypothetical protein
91	 69.27	0	86421..87728	-	435	94984200	-	Dgeo_0092	-	hypothetical protein
92	 67.74	0	87831..88760	+	309	94984201	-	Dgeo_0093	-	porphobilinogen deaminase
93	 69.36	0	88951..89916	+	321	94984202	-	Dgeo_0094	-	asparaginase/glutaminase
94	 65.21	0	89945..90562	-	205	94984203	-	Dgeo_0095	-	DedA family protein
95	 69.74	0	90628..91344	+	238	94984204	-	Dgeo_0096	-	HAD family hydrolase
96	 65.17	0	91376..92311	-	311	94984205	-	Dgeo_0097	-	twin-arginine translocation pathway signal
97	 67.55	0	92543..93220	-	225	94984206	-	Dgeo_0098	-	short-chain dehydrogenase/reductase SDR
98	 71.44	+1	93423..94889	-	488	94984207	-	Dgeo_0099	-	UDP-N-acetylmuramyl-tripeptide synthetases
99	 69.53	0	94990..95373	+	127	94984208	-	Dgeo_0100	-	ArsR family transcriptional regulator
100	 61.86	-1	95398..96021	-	207	94984209	-	Dgeo_0101	-	deoxynucleoside kinase
66.82	MEAN

3.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.