IslandPath Analysis: Methanococcus aeolicus Nankai-3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.15   STD DEV: 3.81
Methanococcus aeolicus Nankai-3, complete genome - 1..1569500
1490 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 25.06	-1	196..1440	+	414	150400440	-	Maeo_0001	-	hypothetical protein
2	 27.63	0	1476..2579	+	367	150400441	-	Maeo_0002	-	hypothetical protein
3	 30.08	0	2672..3625	+	317	150400442	-	Maeo_0003	-	magnesium and cobalt transport protein CorA
4	 25.64	-1	3705..3977	+	90	150400443	-	Maeo_0004	-	ribonucleoprotein complex SRP, Srp19 component
5	 28.64	0	4296..5723	-	475	150400444	-	Maeo_0005	-	ADP-specific phosphofructokinase
6	 29.73	0	5810..7114	-	434	150400445	-	Maeo_0006	-	glucose-6-phosphate isomerase
7	 33.14	0	7231..8811	-	526	150400446	-	Maeo_0007	-	glycosyl transferase group 1
8	 34.95	0	9171..10343	+	390	150400447	-	Maeo_0008	-	glycosyl transferase group 1
9	 26.94	-1	10383..10601	+	72	150400448	-	Maeo_0009	-	hypothetical protein
10	 29.99	0	10806..12689	+	627	150400449	-	Maeo_0010	-	glycoside hydrolase 15-related
11	 26.74	-1	12767..14509	+	580	150400450	-	Maeo_0011	-	Alpha-amylase
12	 28.80	0	14521..15204	+	227	150400451	-	Maeo_0012	-	GTP-binding protein
13	 32.95	0	15586..16107	+	173	150400452	rpl10e	Maeo_0013	-	50S ribosomal protein L10e
14	 32.94	0	16197..17474	-	425	150400453	-	Maeo_0014	-	UbiD family decarboxylase
15	 33.33	0	17573..18211	-	212	150400454	cbiC	Maeo_0015	-	precorrin-8X methylmutase
16	 28.69	0	18343..19161	-	272	150400455	-	Maeo_0016	-	hypothetical protein
17	 28.44	0	19421..19747	+	108	150400456	-	Maeo_0017	-	hypothetical protein
18	 24.64	-1	19798..20844	+	348	150400457	-	Maeo_0018	-	hypothetical protein
19	 31.28	0	20867..21694	+	275	150400458	-	Maeo_0019	-	helix-turn-helix domain-containing protein
20	 38.01	+1	21796..22842	+	348	150400459	-	Maeo_0020	-	hypothetical protein
21	 37.81	+1	22945..24129	+	394	150400460	-	Maeo_0021	-	acetyl-CoA acetyltransferase
22	 22.40	-2	24318..24509	+	63	150400461	-	Maeo_0022	-	hypothetical protein
23	 32.82	0	24552..24944	+	130	150400462	-	Maeo_0023	-	hypothetical protein
24	 31.45	0	25119..25490	+	123	150400463	-	Maeo_0024	-	hydrogenase nickel insertion protein HypA
25	 33.10	0	25552..26850	-	432	150400464	-	Maeo_0025	-	beta-lactamase domain-containing protein
26	 33.14	0	27044..29605	+	853	150400465	-	Maeo_0026	-	DNA topoisomerase I
27	 31.76	0	29701..30714	+	337	150400466	-	Maeo_0027	-	aIF-2BI family translation initiation factor
28	 34.40	0	30801..32117	+	438	150400467	aspC	Maeo_0028	-	aspartyl-tRNA synthetase
29	 32.01	0	32203..32505	+	100	150400468	-	Maeo_0029	-	hypothetical protein
30	 29.28	0	32749..34005	+	418	150400469	hisS	Maeo_0030	-	histidyl-tRNA synthetase
31	 31.82	0	34085..34612	-	175	150400470	-	Maeo_0031	-	hypothetical protein
32	 30.45	0	34946..36265	-	439	150400471	-	Maeo_0032	-	phosphomannomutase
33	 36.20	+1	36500..37510	+	336	150400472	-	Maeo_0033	-	adenylosuccinate synthetase
34	 31.28	0	37628..39772	+	714	150400473	-	Maeo_0034	-	acetyl coenzyme A synthetase subunit alpha
35	 25.86	-1	39805..40473	-	222	150400474	-	Maeo_0035	-	metallophosphoesterase
36	 25.76	-1	40670..41659	+	329	150400475	-	Maeo_0036	-	cobalamin (vitamin B12) biosynthesis CbiG protein
37	 26.36	-1	41741..42514	-	257	150400476	-	Maeo_0037	-	ExsB family protein
38	 44.78	+2	42590..42886	-	98	150400477	-	Maeo_0038	-	transposase IS605 OrfB
39	 29.55	0	44144..45280	+	378	150400478	cbiD	Maeo_0040	-	cobalt-precorrin-6A synthase
40	 24.70	-1	45578..46168	+	196	150400479	-	Maeo_0041	-	phospholipase D/transphosphatidylase
41	 27.35	0	46301..46768	+	155	150400480	-	Maeo_0042	-	aspartate carbamoyltransferase regulatory subunit
42	 32.04	0	47244..48326	+	360	150400481	-	Maeo_0043	-	succinyl-CoA synthetase, beta subunit
43	 35.56	+1	48701..50140	+	479	150400482	-	Maeo_0044	-	carbamoyl-phosphate synthase L chain ATP-binding
44	 34.05	0	50244..52058	+	604	150400483	-	Maeo_0045	-	carbamoyl-phosphate synthase L chain ATP-binding
45	 31.75	0	52089..53165	+	358	150400484	-	Maeo_0046	-	radical SAM domain-containing protein
46	 32.21	0	53257..53703	-	148	150400485	-	Maeo_0047	-	heat shock protein Hsp20
47	 32.47	0	53921..55072	+	383	150400486	-	Maeo_0048	-	signal recognition particle-docking protein FtsY
48	 33.81	0	55173..57080	-	635	150400487	-	Maeo_0049	-	beta-lactamase domain-containing protein
49	 34.56	0	57525..58178	-	217	150400488	-	Maeo_0050	-	proteasome endopeptidase complex
50	 28.24	0	58723..59115	-	130	150400489	-	Maeo_0051	-	phosphoribosyl-AMP cyclohydrolase
51	 31.08	0	59127..60278	-	383	150400490	hemA	Maeo_0052	-	glutamyl-tRNA reductase
52	 23.81	-1	60356..61279	-	307	150400491	-	Maeo_0053	-	siroheme synthase
53	 26.03	-1	61344..62438	-	364	150400492	-	Maeo_0054	-	glycosyl transferase group 1
54	 30.71	0	62540..63148	-	202	150400493	-	Maeo_0055	-	hypothetical protein
55	 29.01	0	63599..63922	-	107	150400494	-	Maeo_0056	-	RNA polymerase Rpb4
56	 35.03	+1	64090..64383	-	97	150400495	-	Maeo_0057	-	50S ribosomal protein L21e
57	 30.78	0	64813..65322	+	169	150400496	-	Maeo_0058	-	hypothetical protein
58	 29.45	0	65720..66028	+	102	150400497	-	Maeo_0059	-	ATPase A1A0 subunit H
59	 33.97	0	66069..68111	+	680	150400498	-	Maeo_0060	-	V-type ATP synthase subunit I
60	 41.67	+2	68189..68860	+	223	150400499	-	Maeo_0061	-	V-type ATP synthase subunit K
61	 30.23	0	68955..69566	+	203	150400500	-	Maeo_0062	-	H+transporting two-sector ATPase E subunit
62	 30.73	0	69599..70750	+	383	150400501	-	Maeo_0063	-	V-type ATP synthase subunit C
63	 36.00	+1	70834..71133	+	99	150400502	-	Maeo_0064	-	V-type ATP synthase subunit F
64	 38.05	+1	71153..72913	+	586	150400503	-	Maeo_0065	-	V-type ATP synthase subunit A
65	 37.13	+1	73035..74429	+	464	150400504	-	Maeo_0066	-	V-type ATP synthase subunit B
66	 33.33	0	74794..75432	+	212	150400505	-	Maeo_0067	-	V-type ATP synthase subunit D
67	 30.08	0	75573..75941	+	122	150400506	-	Maeo_0068	-	hypothetical protein
68	 25.45	-1	76158..76550	+	130	150400507	-	Maeo_0069	-	hypothetical protein
69	 29.96	0	76813..77079	+	88	150400508	-	Maeo_0070	-	hypothetical protein
70	 29.31	0	77106..77801	-	231	150400509	-	Maeo_0071	-	RNA methyltransferase
71	 30.52	0	77915..78625	-	236	150400510	-	Maeo_0072	-	hypothetical protein
72	 34.39	0	78993..79652	+	219	150400511	-	Maeo_0073	-	orotidine 5'-phosphate decarboxylase
73	 28.52	0	79672..79941	+	89	150400512	-	Maeo_0074	-	hypothetical protein
74	 27.94	0	79961..80701	+	246	150400513	-	Maeo_0075	-	uroporphyrinogen III synthase HEM4
75	 31.07	0	80928..81635	+	235	150400514	-	Maeo_0076	-	hypothetical protein
76	 31.22	0	81684..82061	+	125	150400515	-	Maeo_0077	-	hypothetical protein
77	 34.19	0	82208..82789	+	193	150400516	-	Maeo_0078	-	NADPH-dependent FMN reductase
78	 27.69	0	82990..83184	-	64	150400517	-	Maeo_0079	-	ribosomal protein L24E
79	 37.72	+1	83195..83422	-	75	150400518	rps28e	Maeo_0080	-	30S ribosomal protein S28e
80	 33.05	0	83435..83788	-	117	150400519	rpl7ae	Maeo_0081	-	50S ribosomal protein L7Ae
81	 32.31	0	84164..84748	+	194	150400520	-	Maeo_0082	-	formylmethanofuran dehydrogenase subunit E region
82	 35.79	+1	84860..86653	+	597	150400521	-	Maeo_0083	-	amidohydrolase 3
83	 36.23	+1	86655..87932	+	425	150400522	-	Maeo_0084	-	formylmethanofuran dehydrogenase
84	 37.28	+1	87937..89280	+	447	150400523	-	Maeo_0085	-	molybdopterin oxidoreductase
85	 29.42	0	89713..90861	-	382	150400524	-	Maeo_0086	-	molybdenum cofactor synthesis domain-containing protein
86	 34.92	0	91149..92033	+	294	150400525	-	Maeo_0087	-	AIR synthase-like protein
87	 27.67	0	92424..93200	-	258	150400526	-	Maeo_0088	-	cobalt ABC transporter, inner membrane subunit CbiQ
88	 34.98	+1	93654..93956	-	100	150400527	-	Maeo_0089	-	cobalt transport protein CbiN
89	 37.28	+1	93949..94581	-	210	150400528	-	Maeo_0090	-	cobalt transport protein CbiM
90	 31.75	0	94937..98734	+	1265	150400529	-	Maeo_0091	-	DEAD/DEAH box helicase domain-containing protein
91	 28.93	0	98738..99487	-	249	150400530	-	Maeo_0092	-	regulatory protein ArsR
92	 38.75	+1	99602..99841	+	79	150400531	-	Maeo_0093	-	MTH865-like family protein
93	 36.87	+1	99904..100581	+	225	150400532	-	Maeo_0094	-	NADPH-dependent FMN reductase
94	 37.40	+1	100803..102767	-	654	150400533	-	Maeo_0095	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
95	 35.68	+1	102864..104015	-	383	150400534	-	Maeo_0096	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
96	 35.01	+1	104119..105546	-	475	150400535	-	Maeo_0097	-	nickel-dependent hydrogenase large subunit
97	 37.32	+1	105596..106498	-	300	150400536	-	Maeo_0098	-	NADH ubiquinone oxidoreductase 20 kDa subunit
98	 36.15	+1	106564..106989	-	141	150400537	-	Maeo_0099	-	methyl-viologen-reducing hydrogenase delta subunit
99	 38.01	+1	107410..108714	-	434	150400538	-	Maeo_0100	-	molybdopterin oxidoreductase
100	 39.44	+2	108949..109341	-	130	150400539	-	Maeo_0101	-	molydopterin dinucleotide-binding region
31.15	MEAN

3.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.