IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.10	0	102..1463	+	453	22536186	dnaA	SAG0001	-	chromosomal replication initiation protein
2	 33.60	0	1618..2754	+	378	22536187	dnaN	SAG0002	-	DNA polymerase III subunit beta
3	 31.07	-1	2824..3705	+	293	22536188	-	SAG0003	-	diacylglycerol kinase catalytic subunit
4	 33.33	0	3715..3912	+	65	22536189	-	SAG0004	-	hypothetical protein
5	 25.00	-2	4114..4317	+	67	22536190	-	SAG0005	-	hypothetical protein
6	 36.29	0	4477..5592	+	371	22536191	ychF	SAG0006	-	translation-associated GTPase
7	 30.38	-1	5676..6251	+	191	22536192	pth	SAG0007	-	peptidyl-tRNA hydrolase
8	 33.68	0	6248..9745	+	1165	22536193	mfd	SAG0008	-	transcription-repair coupling factor
9	 23.96	-2	9906..10001	+	31	22536194	-	SAG0009	-	hypothetical protein
10	 35.53	0	10036..10308	+	90	22536195	-	SAG0010	-	S4 domain-containing protein
11	 31.99	0	10295..10666	+	123	22536196	-	SAG0011	-	hypothetical protein
12	 29.63	-1	10669..10803	+	44	22536197	-	SAG0012	-	hypothetical protein
13	 32.01	0	10803..12089	+	428	22536198	-	SAG0013	-	hypothetical protein
14	 31.84	0	12091..13365	+	424	22536199	-	SAG0014	-	MesJ/Ycf62 family protein
15	 32.23	0	13370..13912	+	180	22536200	hpt	SAG0015	-	hypoxanthine-guanine phosphoribosyltransferase
16	 37.89	0	13935..15911	+	658	22536201	ftsH	SAG0016	-	cell division protein FtsH
17	 40.85	+1	28902..30245	+	447	22536202	pscB	SAG0017	-	PcsB protein
18	 37.87	0	30369..31337	+	322	22536203	prsA-1	SAG0018	-	ribose-phosphate pyrophosphokinase
19	 35.12	0	31445..32620	+	391	22536204	-	SAG0019	-	aromatic amino acid aminotransferase
20	 30.31	-1	32610..33371	+	253	22536205	recO	SAG0020	-	DNA repair protein RecO
21	 30.05	-1	33461..34312	+	283	22536206	-	SAG0021	-	protease, putative
22	 37.26	0	34390..35382	+	330	22536207	plsX	SAG0022	-	putative glycerol-3-phosphate acyltransferase PlsX
23	 35.83	0	35393..35632	+	79	22536208	acpP-1	SAG0023	-	acyl carrier protein
24	 37.16	0	35756..36460	+	234	22536209	purC	SAG0024	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
25	 44.63	+2	36583..40308	+	1241	22536210	-	SAG0025	-	phosphoribosylformylglycinamidine synthase, putative
26	 37.80	0	40720..42174	+	484	22536211	purF	SAG0026	-	amidophosphoribosyltransferase
27	 45.26	+2	42202..43224	+	340	22536212	purM	SAG0027	-	phosphoribosylaminoimidazole synthetase
28	 46.63	+2	43392..43940	+	182	22536213	purN	SAG0028	-	phosphoribosylglycinamide formyltransferase
29	 35.59	0	43963..44715	+	250	22536214	-	SAG0029	-	acetyltransferase
30	 47.09	+2	44735..46282	+	515	22536215	purH	SAG0030	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
31	 40.89	+1	46475..47374	+	299	22536216	-	SAG0031	-	M24/M37 family peptidase
32	 40.77	+1	47521..48825	+	434	22536217	-	SAG0032	-	group B streptococcal surface immunogenic protein
33	 38.77	0	49072..49770	+	232	22536218	-	SAG0033	-	N-acetylmannosamine-6-phosphate 2-epimerase
34	 35.00	0	49817..51133	+	438	22536219	-	SAG0034	-	sugar ABC transporter, sugar-binding protein
35	 34.35	0	51221..52108	+	295	22536220	-	SAG0035	-	sugar ABC transporter, permease protein
36	 35.98	0	52118..52948	+	276	22536221	-	SAG0036	-	sugar ABC transporter, permease protein
37	 31.98	0	52961..53404	+	147	22536222	-	SAG0037	-	hypothetical protein
38	 31.98	0	53424..54086	+	220	22536223	-	SAG0038	-	hypothetical protein
39	 35.51	0	54083..55000	+	305	22536224	-	SAG0039	-	N-acetylneuraminate lyase, putative
40	 38.21	0	55017..55898	+	293	22536225	-	SAG0040	-	ROK family protein
41	 35.58	0	55906..56883	+	325	22536226	-	SAG0041	-	acetyl xylan esterase, putative
42	 35.45	0	56906..57709	-	267	22536227	-	SAG0042	-	RpiR family phosphosugar-binding transcriptional regulator
43	 49.92	+2	57991..59256	+	421	22536228	purD	SAG0043	-	phosphoribosylamine--glycine ligase
44	 50.10	+2	59537..60025	+	162	22536229	purE	SAG0044	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
45	 50.00	+2	60012..61103	+	363	22536230	purK	SAG0045	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
46	 23.71	-2	61157..62548	+	463	22536231	-	SAG0046	-	hypothetical protein
47	 45.11	+2	62573..63871	+	432	22536232	purB	SAG0047	-	adenylosuccinate lyase
48	 29.93	-1	64023..64934	+	303	22536233	-	SAG0048	-	Cro/CI family transcriptional regulator
49	 37.74	0	65231..66229	+	332	22536234	ruvB	SAG0049	-	Holliday junction DNA helicase B
50	 38.13	0	66381..66818	+	145	22536235	-	SAG0050	-	phosphotyrosine protein phosphatase, low molecular weight
51	 33.86	0	66825..67205	+	126	22536236	-	SAG0051	-	MORN motif-containing protein
52	 34.23	0	67202..68980	+	592	22536237	-	SAG0052	-	hypothetical protein
53	 39.01	0	69250..71892	+	880	22536238	adhE	SAG0053	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
54	 42.87	+1	72071..73087	+	338	22536239	adhP	SAG0054	-	alcohol dehydrogenase
55	 35.95	0	73207..74697	+	496	22536240	thrC	SAG0055	-	threonine synthase
56	 36.00	0	74844..76082	+	412	22536241	-	SAG0056	-	MATE efflux family protein
57	 40.78	+1	76288..76596	+	102	22536242	rpsJ	SAG0057	-	30S ribosomal protein S10
58	 41.95	+1	76701..77327	+	208	22536243	rplC	SAG0058	-	50S ribosomal protein L3
59	 42.79	+1	77351..77974	+	207	22536244	rplD	SAG0059	-	50S ribosomal protein L4
60	 36.70	0	77974..78270	+	98	22536245	rplW	SAG0060	-	50S ribosomal protein L23
61	 41.37	+1	78288..79121	+	277	22536246	rplB	SAG0061	-	50S ribosomal protein L2
62	 39.78	+1	79220..79498	+	92	22536247	rpsS	SAG0062	-	30S ribosomal protein S19
63	 39.42	+1	79514..79858	+	114	22536248	rplV	SAG0063	-	50S ribosomal protein L22
64	 40.83	+1	79871..80524	+	217	22536249	rpsC	SAG0064	-	30S ribosomal protein S3
65	 42.75	+1	80528..80941	+	137	22536250	rplP	SAG0065	-	50S ribosomal protein L16
66	 34.78	0	80951..81157	+	68	22536251	rpmC	SAG0066	-	50S ribosomal protein L29
67	 37.93	0	81183..81443	+	86	22536252	rpsQ	SAG0067	-	30S ribosomal protein S17
68	 44.17	+2	81468..81836	+	122	22536253	rplN	SAG0068	-	50S ribosomal protein L14
69	 38.89	0	81916..82221	+	101	22536254	rplX	SAG0069	-	50S ribosomal protein L24
70	 39.04	0	82245..82787	+	180	22536255	rplE	SAG0070	-	50S ribosomal protein L5
71	 43.55	+2	82805..82990	+	61	22536256	rpsN	SAG0071	-	30S ribosomal protein S14
72	 35.09	0	83145..83543	+	132	22536257	rpsH	SAG0072	-	30S ribosomal protein S8
73	 38.92	0	83653..84189	+	178	22536258	rplF	SAG0073	-	50S ribosomal protein L6
74	 44.26	+2	84290..84646	+	118	22536259	rplR	SAG0074	-	50S ribosomal protein L18
75	 43.84	+2	84665..85159	+	164	22536260	rpsE	SAG0075	-	30S ribosomal protein S5
76	 38.33	0	85174..85353	+	59	22536261	rpmD	SAG0076	-	50S ribosomal protein L30
77	 40.59	+1	85478..85918	+	146	22536262	rplO	SAG0077	-	50S ribosomal protein L15
78	 34.94	0	85939..87243	+	434	22536263	secY	SAG0078	-	preprotein translocase subunit SecY
79	 38.34	0	87338..87976	+	212	22536264	adk	SAG0079	-	adenylate kinase
80	 37.90	0	88092..88310	+	72	22536265	infA	SAG0080	-	translation initiation factor IF-1
81	 38.46	0	88336..88452	+	38	22536266	rpmJ	SAG0081	-	50S ribosomal protein L36
82	 40.16	+1	88470..88835	+	121	22536267	rpsM	SAG0082	-	30S ribosomal protein S13
83	 44.01	+2	88853..89236	+	127	161485618	rpsK	SAG0083	-	30S ribosomal protein S11
84	 37.06	0	89286..90224	+	312	22536269	rpoA	SAG0084	-	DNA-directed RNA polymerase subunit alpha
85	 39.79	+1	90239..90625	+	128	22536270	rplQ	SAG0085	-	50S ribosomal protein L17
86	 29.07	-1	97819..98076	+	85	22536271	-	SAG0086	-	putative lipoprotein
87	 36.11	0	98067..98246	+	59	22536272	-	SAG0087	-	hypothetical protein
88	 33.33	0	98316..98486	+	56	22536273	-	SAG0088	-	hypothetical protein
89	 30.62	-1	99401..99952	+	183	22536274	-	SAG0089	-	hypothetical protein
90	 28.33	-1	100172..100591	+	139	22536275	-	SAG0090	-	hypothetical protein
91	 29.66	-1	100836..101270	+	144	22536276	-	SAG0091	-	transcriptional regulator ComX1, putative
92	 39.25	+1	101392..102084	+	230	22536277	-	SAG0092	-	phosphoglycerate mutase family protein
93	 35.86	0	102081..102833	+	250	22536278	-	SAG0093	-	D-alanyl-D-alanine carboxypeptidase family protein
94	 31.94	0	102830..103405	+	191	22536279	-	SAG0094	-	N-acetylmuramoyl-L-alanine amidase
95	 37.78	0	103548..104582	+	344	22536280	hrcA	SAG0095	-	heat-inducible transcription repressor
96	 40.66	+1	104585..105157	+	190	22536281	grpE	SAG0096	-	heat shock protein GrpE
97	 39.78	+1	105338..107167	+	609	22536282	dnaK	SAG0097	-	molecular chaperone DnaK
98	 41.49	+1	107456..108595	+	379	22536283	dnaJ	SAG0098	-	dnaJ protein
99	 33.89	0	108709..109956	+	415	22536284	-	SAG0099	-	GntR family transcriptional regulator
100	 36.55	0	110027..110803	+	258	22536285	truA	SAG0100	-	tRNA pseudouridine synthase A
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.