IslandPath Analysis: Chlorobium limicola DSM 245



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 4.82
Chlorobium limicola DSM 245, complete genome - 1..2763181
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.51	-1	162..1637	+	491	189345559	-	Clim_0001	-	chromosomal replication initiator protein DnaA
2	 40.27	-2	1930..3054	+	374	189345560	-	Clim_0002	-	DNA polymerase III, beta subunit
3	 42.49	-1	3071..4162	+	363	189345561	-	Clim_0003	-	DNA replication and repair protein RecF
4	 39.16	-2	4159..4467	+	102	189345562	-	Clim_0004	-	hypothetical protein
5	 43.55	-1	4546..5769	-	407	189345563	-	Clim_0005	-	beta-lactamase domain protein
6	 42.53	-1	6005..8386	-	793	189345564	-	Clim_0006	-	cyclic nucleotide-binding protein
7	 45.28	-1	8448..10313	-	621	189345565	-	Clim_0007	-	glucose inhibited division protein A
8	 43.52	-1	10832..11302	+	156	189345566	-	Clim_0008	-	thiosulfate-binding protein SoxY
9	 45.79	-1	11339..11635	+	98	189345567	-	Clim_0009	-	Sulphur oxidation protein SoxZ
10	 49.73	0	11700..12071	+	123	189345568	-	Clim_0010	-	cytochrome c class I
11	 49.81	0	12087..13379	+	430	189345569	-	Clim_0011	-	Flavocytochrome c sulphide dehydrogenase flavin-binding
12	 50.49	0	13548..15371	+	607	189345570	-	Clim_0012	-	protein-export membrane protein SecD
13	 50.85	0	15393..16328	+	311	189345571	-	Clim_0013	-	protein-export membrane protein SecF
14	 50.76	0	16388..17701	+	437	189345572	-	Clim_0014	-	SurA domain
15	 50.98	0	17690..19621	-	643	189345573	-	Clim_0015	-	DNA gyrase, B subunit
16	 51.54	0	19711..20100	-	129	189345574	-	Clim_0016	-	protein of unknown function UPF0102
17	 52.44	0	20113..21012	-	299	189345575	-	Clim_0017	-	Ribonuclease H
18	 53.09	0	21239..22939	+	566	189345576	-	Clim_0018	-	ribonuclease, Rne/Rng family
19	 53.36	0	22958..23821	+	287	189345577	-	Clim_0019	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
20	 52.30	0	23941..25638	+	565	189345578	-	Clim_0020	-	carboxyl-terminal protease
21	 51.26	0	25618..26331	-	237	189345579	-	Clim_0021	-	hypothetical protein
22	 54.24	0	26395..27537	-	380	189345580	-	Clim_0022	-	geranylgeranyl reductase
23	 54.76	0	27581..29050	-	489	189345581	-	Clim_0023	-	glycyl-tRNA synthetase
24	 49.90	0	29193..29717	+	174	189345582	-	Clim_0024	-	hypothetical protein
25	 46.12	-1	29775..30212	+	145	189345583	-	Clim_0025	-	hypothetical protein
26	 50.49	0	30422..30730	-	102	189345584	-	Clim_0026	-	ATP-dependent Clp protease adaptor protein ClpS
27	 53.06	0	30825..31787	-	320	189345585	-	Clim_0027	-	Muramoyltetrapeptide carboxypeptidase
28	 49.44	0	31832..32098	-	88	189345586	-	Clim_0028	-	H+transporting two-sector ATPase delta/epsilon subunit
29	 53.06	0	32115..33503	-	462	189345587	-	Clim_0029	-	ATP synthase F1, beta subunit
30	 50.00	0	33880..34419	+	179	189345588	-	Clim_0030	-	Redoxin domain protein
31	 55.89	0	34568..36433	+	621	189345589	-	Clim_0031	-	Phosphoenolpyruvate carboxykinase (GTP)
32	 54.39	0	36820..38220	+	466	189345590	-	Clim_0032	-	membrane protein involved in aromatic hydrocarbon degradation
33	 45.89	-1	38307..38537	-	76	189345591	-	Clim_0033	-	protein of unknown function DUF1458
34	 57.92	+1	39191..40744	+	517	189345592	-	Clim_0034	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
35	 57.27	+1	40764..43625	+	953	189345593	-	Clim_0035	-	molydopterin dinucleotide-binding region
36	 55.38	0	43734..44690	+	318	189345594	-	Clim_0036	-	protein of unknown function DUF81
37	 51.08	0	44687..45103	+	138	189345595	-	Clim_0037	-	hypothetical protein
38	 47.68	0	45263..45499	+	78	189345596	-	Clim_0038	-	SirA family protein
39	 50.78	0	45514..46023	+	169	189345597	-	Clim_0039	-	hypothetical protein
40	 56.38	+1	46395..46637	+	80	189345598	-	Clim_0040	-	hypothetical protein
41	 54.71	0	46674..48521	-	615	189345599	-	Clim_0041	-	ATP-dependent DNA helicase RecQ
42	 55.62	0	48872..49387	-	171	189345600	-	Clim_0042	-	hypothetical protein
43	 58.37	+1	49524..50258	+	244	189345601	-	Clim_0043	-	transcriptional regulator, TetR family
44	 57.42	+1	50271..50735	+	154	189345602	-	Clim_0044	-	putative transmembrane protein
45	 55.48	0	50732..52027	+	431	189345603	-	Clim_0045	-	NADPH-dependent FMN reductase
46	 54.51	0	52218..52694	+	158	189345604	-	Clim_0046	-	hypothetical protein
47	 52.56	0	52813..53358	-	181	189345605	-	Clim_0047	-	hypothetical protein
48	 59.38	+1	53452..54261	-	269	189345606	-	Clim_0048	-	Methyltransferase type 11
49	 48.25	0	54740..55054	+	104	189345607	-	Clim_0049	-	hypothetical protein
50	 52.83	0	55088..55687	-	199	189345608	-	Clim_0050	-	hypothetical protein
51	 58.72	+1	55694..56599	-	301	189345609	-	Clim_0051	-	PASTA domain containing protein
52	 55.10	0	56965..59643	+	892	189345610	-	Clim_0052	-	hypothetical protein
53	 51.72	0	60329..61579	+	416	189345611	-	Clim_0054	-	DNA methylase N-4/N-6 domain protein
54	 45.70	-1	61572..62210	+	212	189345612	-	Clim_0055	-	conserved hypothetical cytosolic protein
55	 47.20	0	62224..64206	-	660	189345613	-	Clim_0056	-	hypothetical protein
56	 44.09	-1	64216..64596	-	126	189345614	-	Clim_0057	-	hypothetical protein
57	 58.33	+1	64725..64904	-	59	189345615	-	Clim_0058	-	hypothetical protein
58	 54.07	0	64972..65916	-	314	189345616	-	Clim_0059	-	4'-phosphopantetheinyl transferase
59	 56.66	+1	66458..67396	-	312	189345617	-	Clim_0061	-	hypothetical protein
60	 56.99	+1	67692..69014	+	440	189345618	-	Clim_0062	-	major facilitator superfamily MFS_1
61	 56.13	0	69168..69746	-	192	189345619	-	Clim_0063	-	hypothetical protein
62	 48.28	0	69809..70216	-	135	189345620	-	Clim_0064	-	putative hypothetical Gifsy-1 prophage protein
63	 56.74	+1	70582..71115	+	177	189345621	-	Clim_0065	-	methionine-R-sulfoxide reductase
64	 45.74	-1	71112..71240	-	42	189345622	-	Clim_0066	-	PilT protein domain protein
65	 50.54	0	71237..71515	-	92	189345623	-	Clim_0067	-	SpoVT/AbrB domain protein
66	 61.00	+1	71573..73159	-	528	189345624	-	Clim_0068	-	drug resistance transporter, EmrB/QacA subfamily
67	 59.84	+1	73156..74151	-	331	189345625	-	Clim_0069	-	secretion protein HlyD family protein
68	 55.49	0	74151..74624	-	157	189345626	-	Clim_0070	-	UspA domain protein
69	 59.65	+1	74626..75951	-	441	189345627	-	Clim_0071	-	outer membrane efflux protein
70	 59.33	+1	76218..78302	+	694	189345628	-	Clim_0072	-	transcriptional regulator, NifA subfamily, Fis Family
71	 60.39	+1	78710..79903	-	397	189345629	-	Clim_0073	-	putative transcriptional regulator, GntR family
72	 56.88	+1	79968..80396	-	142	189345630	-	Clim_0074	-	amino acid-binding ACT domain protein
73	 58.14	+1	80414..81715	-	433	189345631	-	Clim_0075	-	Phenylacetate--CoA ligase
74	 57.07	+1	81816..82409	-	197	189345632	-	Clim_0076	-	pyruvate ferredoxin/flavodoxin oxidoreductase
75	 59.90	+1	82415..84025	-	536	189345633	-	Clim_0077	-	thiamine pyrophosphate protein domain protein TPP-binding
76	 55.50	0	84212..85402	-	396	189345634	-	Clim_0078	-	arsenite-activated ATPase ArsA
77	 50.95	0	85597..86442	+	281	189345635	-	Clim_0079	-	hypothetical protein
78	 54.43	0	86483..87373	+	296	189345636	-	Clim_0080	-	hypothetical protein
79	 57.51	+1	87426..87971	-	181	189345637	-	Clim_0081	-	nitroreductase
80	 50.49	0	87955..88566	-	203	189345638	-	Clim_0082	-	hypothetical protein
81	 58.66	+1	88727..89800	-	357	189345639	-	Clim_0083	-	peptide chain release factor 1
82	 54.77	0	89837..91198	-	453	189345640	-	Clim_0084	-	membrane-associated zinc metalloprotease
83	 56.66	+1	91293..92441	-	382	189345641	-	Clim_0085	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
84	 53.62	0	92753..93028	-	91	189345642	-	Clim_0086	-	acylphosphatase
85	 54.05	0	93045..95129	-	694	189345643	-	Clim_0087	-	ATP-dependent metalloprotease FtsH
86	 53.81	0	95392..96231	+	279	189345644	-	Clim_0088	-	orotidine 5'-phosphate decarboxylase
87	 53.71	0	96341..98185	+	614	189345645	-	Clim_0089	-	glucosamine/fructose-6-phosphate aminotransferase, isomerizing
88	 52.50	0	98212..98571	+	119	189345646	-	Clim_0090	-	hypothetical protein
89	 54.14	0	98703..99644	+	313	189345647	-	Clim_0091	-	domain of unknown function DUF1731
90	 52.12	0	99749..100243	+	164	189345648	-	Clim_0092	-	Ferritin Dps family protein
91	 49.45	0	100322..100594	-	90	189345649	-	Clim_0093	-	RNP-1 like RNA-binding protein
92	 55.86	0	101052..102383	+	443	189345650	-	Clim_0094	-	ammonium transporter
93	 50.00	0	102393..102734	+	113	189345651	-	Clim_0095	-	nitrogen regulatory protein P-II
94	 49.83	0	102824..103399	-	191	189345652	-	Clim_0096	-	TPR repeat-containing protein
95	 49.86	0	103717..104442	+	241	189345653	-	Clim_0097	-	chromosome segregation and condensation protein ScpA
96	 54.17	0	104442..104921	+	159	189345654	-	Clim_0098	-	Glyoxalase/bleomycin resistance protein/dioxygenase
97	 57.33	+1	105082..106356	+	424	189345655	-	Clim_0099	-	hypothetical protein
98	 53.51	0	106358..106813	+	151	189345656	-	Clim_0100	-	protein of unknown function UPF0079
99	 57.27	+1	106810..107490	+	226	189345657	-	Clim_0101	-	peptidase M22 glycoprotease
100	 51.77	0	107538..107933	+	131	189345658	-	Clim_0102	-	iojap-like protein
51.51	MEAN

4.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.