IslandPath Analysis: Ralstonia eutropha JMP134



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.83   STD DEV: 3.27
Ralstonia eutropha JMP134 chromosome 1, complete sequence - 1..3806533
3439 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.65	0	265..2019	+	584	161611268	dnaA	Reut_A0001	-	chromosomal replication initiation protein
2	 61.56	-1	2393..3508	+	371	73539708	-	Reut_A0002	-	DNA polymerase III subunit beta
3	 62.03	0	3726..6251	+	841	73539709	gyrB	Reut_A0003	-	DNA gyrase subunit B
4	 46.97	-2	6870..7844	-	324	73539710	-	Reut_A0004	-	RNA-directed DNA polymerase
5	 45.61	-2	8322..9176	-	284	73539711	-	Reut_A0005	-	hypothetical protein
6	 47.35	-2	9666..10892	+	408	73539712	-	Reut_A0006	-	hypothetical protein
7	 53.81	-2	10911..11750	+	279	73539713	-	Reut_A0007	-	hypothetical protein
8	 54.40	-2	11772..12521	-	249	73539714	-	Reut_A0008	-	HNH endonuclease
9	 65.45	0	13039..13368	+	109	73539715	-	Reut_A0009	-	hypothetical protein
10	 64.78	0	13518..14420	-	300	73539716	-	Reut_A0010	-	putative oxidoreductase
11	 66.15	0	14468..15436	+	322	73539717	-	Reut_A0011	-	LysR family transcriptional regulator
12	 48.66	-2	15584..16255	+	223	73539718	-	Reut_A0012	-	hypothetical protein
13	 60.58	-1	17474..19789	+	771	73539719	-	Reut_A0013	-	Rhs element Vgr protein
14	 44.83	-2	19761..20273	+	170	73539720	-	Reut_A0014	-	hypothetical protein
15	 53.32	-2	20403..22733	+	776	73539721	-	Reut_A0015	-	hypothetical protein
16	 59.39	-1	23467..23727	+	86	73539722	-	Reut_A0016	-	PAAR
17	 62.19	0	23730..25001	+	423	73539723	-	Reut_A0017	-	hypothetical protein
18	 62.52	0	24982..28596	+	1204	73539724	-	Reut_A0018	-	hypothetical protein
19	 63.28	0	28660..31167	-	835	73539725	-	Reut_A0019	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
20	 62.54	0	31420..32484	-	354	73539726	-	Reut_A0020	-	hypothetical protein
21	 64.33	0	32508..33407	-	299	73539727	-	Reut_A0021	-	taurine dioxygenase
22	 62.92	0	33770..34783	-	337	73539728	-	Reut_A0022	-	hypothetical protein
23	 63.74	0	34962..36737	+	591	73539729	-	Reut_A0023	-	OmpA
24	 60.34	-1	36763..38247	+	494	73539730	-	Reut_A0024	-	hypothetical protein
25	 62.88	0	38222..39118	+	298	73539731	-	Reut_A0025	-	hypothetical protein
26	 61.65	0	39188..39925	+	245	73539732	-	Reut_A0026	-	ThiJ/PfpI
27	 62.57	0	39961..41106	-	381	73539733	-	Reut_A0027	-	LuxR family transcriptional regulator
28	 63.94	0	41294..41953	-	219	73539734	-	Reut_A0028	-	isoprenylcysteine carboxyl methyltransferase
29	 59.76	-1	42093..42425	+	110	73539735	-	Reut_A0029	-	hypothetical protein
30	 64.00	0	42567..43316	-	249	73539736	-	Reut_A0030	-	carbonate dehydratase
31	 64.58	0	43585..43920	-	111	73539737	-	Reut_A0031	-	transthyretin
32	 67.46	0	43952..44458	-	168	73539738	-	Reut_A0032	-	transthyretin
33	 65.18	0	44460..45800	-	446	73539739	-	Reut_A0033	-	major facilitator transporter
34	 65.19	0	46205..47152	+	315	73539740	-	Reut_A0034	-	regulatory protein, LysR:LysR, substrate-binding
35	 64.02	0	47309..47836	+	175	73539741	-	Reut_A0035	-	putative uricase
36	 66.67	0	47892..49691	-	599	73539742	-	Reut_A0036	-	methyl-accepting chemotaxis sensory transducer
37	 66.91	0	50193..51410	+	405	73539743	-	Reut_A0037	-	lipoprotein
38	 64.09	0	51561..52490	+	309	73539744	-	Reut_A0038	-	hypothetical protein
39	 67.44	0	52533..53957	+	474	73539745	-	Reut_A0039	-	ATP-dependent RNA helicase DbpA
40	 58.96	-1	54114..54554	+	146	73539746	-	Reut_A0040	-	CBS
41	 69.43	+1	54771..56363	+	530	73539747	-	Reut_A0041	-	EmrB/QacA family drug resistance transporter
42	 64.79	0	56453..57091	+	212	73539748	-	Reut_A0042	-	glutathione peroxidase
43	 64.27	0	57228..58019	+	263	73539749	-	Reut_A0043	-	Beta-lactamase-like
44	 67.48	0	58027..58764	-	245	73539750	-	Reut_A0044	-	Asp/Glu racemase
45	 66.10	0	58788..60209	-	473	73539751	-	Reut_A0045	-	dihydropyrimidinase
46	 63.92	0	60246..61010	-	254	73539752	-	Reut_A0046	-	Asp/Glu racemase
47	 66.83	0	61040..62233	-	397	73539753	-	Reut_A0047	-	Beta-lactamase
48	 64.74	0	62310..63608	-	432	73539754	-	Reut_A0048	-	major facilitator transporter
49	 67.07	0	63789..64526	+	245	73539755	-	Reut_A0049	-	GntR family transcriptional regulator
50	 67.50	0	64523..65365	+	280	73539756	-	Reut_A0050	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
51	 63.81	0	65610..66833	+	407	73539757	-	Reut_A0051	-	peptidase M20D, amidohydrolase
52	 66.30	0	67055..67882	-	275	73539758	-	Reut_A0052	-	AraC family transcriptional regulator
53	 66.43	0	68010..69269	+	419	73539759	-	Reut_A0053	-	major facilitator transporter
54	 70.94	+1	69364..69924	+	186	73539760	-	Reut_A0054	-	hypothetical protein
55	 67.83	0	69948..71324	+	458	73539761	-	Reut_A0055	-	GAF:pyridoxamine 5'-phosphate oxidase-related, FMN-binding
56	 66.27	0	71325..72077	-	250	73539762	-	Reut_A0056	-	hypothetical protein
57	 65.56	0	72333..72695	+	120	73539763	-	Reut_A0057	-	hypothetical protein
58	 67.39	0	72792..73760	+	322	73539764	-	Reut_A0058	-	hypothetical protein
59	 67.22	0	73789..74517	-	242	73539765	-	Reut_A0059	-	response regulator receiver:transcriptional regulatory protein, C-terminal
60	 64.83	0	74665..75372	+	235	73539766	-	Reut_A0060	-	response regulator receiver:transcriptional regulatory protein, C-terminal
61	 62.64	0	75471..76562	-	363	73539767	-	Reut_A0061	-	porin
62	 60.39	-1	76859..77113	-	84	73539768	-	Reut_A0062	-	cell division topological specificity factor MinE
63	 61.89	0	77138..77953	-	271	73539769	-	Reut_A0063	-	septum site-determining protein MinD
64	 66.79	0	78024..78860	-	278	73539770	-	Reut_A0064	-	septum formation inhibitor
65	 63.37	0	79032..80003	+	323	73539771	-	Reut_A0065	-	Mg2+ transporter protein, CorA-like
66	 69.20	+1	80160..80909	+	249	73539772	-	Reut_A0066	-	Sel1 repeat-containing protein
67	 67.28	0	80983..84426	+	1147	73539773	-	Reut_A0067	-	transglutaminase-like
68	 68.42	+1	84429..87116	+	895	73539774	-	Reut_A0068	-	hypothetical protein
69	 68.09	0	87113..88024	+	303	73539775	-	Reut_A0069	-	transglutaminase-like
70	 63.65	0	88087..89013	+	308	73539776	-	Reut_A0070	-	hypothetical protein
71	 62.83	0	89061..90518	-	485	73539777	gatB	Reut_A0071	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
72	 73.41	+2	90612..91709	-	365	73539778	-	Reut_A0072	-	dienelactone hydrolase
73	 66.88	0	91721..92185	-	154	73539779	-	Reut_A0073	-	lipoprotein
74	 68.53	+1	92182..93687	-	501	73539780	gatA	Reut_A0074	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
75	 64.00	0	93749..94048	-	99	161611267	gatC	Reut_A0075	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
76	 64.56	0	94678..95721	+	347	73539782	-	Reut_A0076	-	rod shape-determining protein MreB
77	 69.23	+1	95915..96889	+	324	73539783	-	Reut_A0077	-	rod shape-determining protein MreC
78	 66.08	0	96886..97398	+	170	73539784	-	Reut_A0078	-	rod shape-determining MreD transmembrane protein
79	 66.71	0	97430..99730	+	766	73539785	-	Reut_A0079	-	peptidoglycan glycosyltransferase
80	 63.25	0	99742..100884	+	380	73539786	-	Reut_A0080	-	rod shape-determining protein RodA
81	 65.84	0	100915..101640	+	241	73539787	-	Reut_A0081	-	hypothetical protein
82	 68.14	+1	101670..102689	+	339	73539788	xerC	Reut_A0082	-	site-specific tyrosine recombinase XerC
83	 65.91	0	102694..103623	-	309	73539789	-	Reut_A0083	-	DNA-binding transcriptional activator GcvA
84	 66.94	0	103856..104224	+	122	73539790	-	Reut_A0084	-	hypothetical protein
85	 66.53	0	104387..105097	+	236	161611266	lipB	Reut_A0085	-	lipoyltransferase
86	 65.16	0	105147..106142	+	331	73539792	-	Reut_A0086	-	lipoyl synthase
87	 69.28	+1	106384..107034	+	216	73539793	-	Reut_A0087	-	hypothetical protein
88	 71.18	+1	107031..108050	+	339	73539794	-	Reut_A0088	-	allophanate hydrolase subunit 2
89	 67.21	0	108063..108803	+	246	73539795	-	Reut_A0089	-	hypothetical protein
90	 66.39	0	108905..109636	+	243	73539796	-	Reut_A0090	-	hypothetical protein
91	 65.40	0	109640..110590	+	316	73539797	-	Reut_A0091	-	hypothetical protein
92	 66.67	0	110606..111256	+	216	73539798	-	Reut_A0092	-	pyrrolidone-carboxylate peptidase
93	 64.62	0	111843..121088	+	3081	73539799	-	Reut_A0093	-	filamentous haemagglutinin adhesin HecA 20-repeat-containing protein
94	 65.86	0	121375..123099	+	574	73539800	-	Reut_A0094	-	hemolysin activator HlyB
95	 64.27	0	123100..123642	+	180	73539801	-	Reut_A0095	-	hypothetical protein
96	 61.90	0	123633..123884	+	83	73539802	-	Reut_A0096	-	hypothetical protein
97	 67.15	0	123957..125207	-	416	73539803	-	Reut_A0097	-	VanZ like protein
98	 70.65	+1	125220..125846	-	208	73539804	-	Reut_A0098	-	lipoprotein
99	 65.82	0	125881..126822	-	313	73539805	-	Reut_A0099	-	hypothetical protein
100	 67.03	0	126819..127655	-	278	73539806	-	Reut_A0100	-	ABC transporter related
64.83	MEAN

3.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.