IslandPath Analysis: Lactococcus lactis subsp. lactis Il1403



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.64   STD DEV: 3.56
Lactococcus lactis subsp. lactis Il1403, complete genome - 1..2365589
2321 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.43	0	358..1725	+	455	15671983	dnaA	L0274	-	chromosomal replication initiation protein
2	 31.93	-1	1882..3024	+	380	15671984	dnaN	L0275	-	DNA polymerase III subunit beta
3	 31.91	-1	3130..6429	+	1099	15671985	rexB	L0252	-	subunit B of ATP-dependent exonuclease
4	 32.34	0	6422..10033	+	1203	15671986	rexA	L0251	-	ATP-dependent exonuclease subunit a
5	 36.32	0	10070..10270	+	66	30023968	-	L200000	-	hypothetical protein
6	 35.13	0	10280..10837	-	185	15671987	yabA	L10283	-	transcription regulator
7	 38.35	0	11119..12234	+	371	15671988	yyaL	L0161	-	translation-associated GTPase
8	 30.86	-1	12346..12669	+	107	15671989	yabB	L12334	-	transcription regulator
9	 40.29	+1	12924..13268	+	114	15671990	yabC	L12912	-	hypothetical protein
10	 29.17	-1	13281..15272	+	663	15671991	yabD	L13272	-	hypothetical protein
11	 31.92	-1	15274..15909	+	211	15671992	yabE	L15262	-	ABC transporter ATP-binding protein
12	 29.72	-1	16110..16580	+	156	15671993	yabF	L16101	-	hypothetical protein
13	 37.21	0	16598..17164	+	188	15671994	pth	L0365	-	peptidyl-tRNA hydrolase
14	 35.54	0	17165..20650	+	1161	15671995	mfd	L0263	-	transcription-repair coupling factor
15	 32.48	0	20810..21280	+	156	15671996	yacI	L20795	-	hypothetical protein
16	 31.13	-1	21351..21668	+	105	15671997	yacB	L1001	-	hypothetical protein
17	 31.47	-1	21697..22071	+	124	15671998	yacC	L21634	-	hypothetical protein
18	 30.25	-1	22071..22394	+	107	15671999	yacD	L22059	-	hypothetical protein
19	 33.85	0	22532..23881	+	449	15672000	yacG	L22496	-	hypothetical protein
20	 32.00	-1	23878..25149	+	423	15672001	mesJ	L1002	-	hypothetical protein
21	 31.70	-1	25130..25681	+	183	15672002	hpt	L25115	-	hypoxanthine phosphoribosyltransferase
22	 40.23	+1	25887..27974	+	695	15672003	ftsH	L0204	-	hypothetical protein
23	 31.89	-1	30922..32859	+	645	15672004	mtlR	L30901	-	LysR family transcription regulator
24	 32.87	0	32907..33338	+	143	15672005	mtlF	L32907	-	mannitol-specific PTS system IIA component
25	 33.59	0	33476..34633	+	385	15672006	mtlD	L33416	-	mannitol-1-phosphate 5-dehydrogenase
26	 41.05	+1	35516..35839	-	107	15672007	ps101	L35519	-	prophage ps1 protein 01
27	 38.69	0	35864..36274	-	136	15672008	ps102	L35867	-	prophage ps1 protein 02
28	 40.54	+1	36271..36714	-	147	15672009	ps103	L36274	-	terminase subunit
29	 40.03	+1	36847..37428	-	193	15672010	ps104	L36850	-	prophage ps1 protein 04
30	 40.52	+1	37664..39292	-	542	15672011	ps105	L37667	-	DNA primase
31	 42.14	+1	39303..40097	-	264	15672012	ps106	L39306	-	prophage ps1 protein 06
32	 40.91	+1	40101..40430	-	109	15672013	ps107	L40104	-	prophage ps1 protein 07
33	 34.36	0	40417..40611	-	64	30023969	-	L200001	-	prophage ps2 protein 12
34	 41.18	+1	40608..40862	-	84	15672014	ps108	L40611	-	prophage ps1 protein 08
35	 40.00	+1	40859..41098	-	79	15672015	ps109	L40862	-	prophage ps1 protein 09
36	 35.46	0	41141..41422	-	93	15672016	ps110	L41144	-	prophage ps1 protein 10
37	 29.76	-1	41419..41670	-	83	15672017	ps111	L41422	-	prophage ps1 protein 11
38	 36.40	0	41667..42188	-	173	15672018	ps112	L41670	-	prophage ps1 protein 12
39	 36.41	0	42192..42386	-	64	15672019	ps113	L42195	-	prophage ps1 protein 13
40	 32.52	0	42462..43202	-	246	15672020	ps114	L42465	-	prophage ps1 protein 14
41	 41.24	+1	43231..43407	-	58	30023970	-	L200002	-	putative bacteriophage bIL310 repressor
42	 37.98	0	43689..44075	+	128	15672021	ps115	L43680	-	prophage ps1 protein 15
43	 39.64	+1	44085..44639	+	184	15672022	ps116	L44085	-	prophage ps1 protein 16
44	 19.48	-2	44750..44980	+	76	15672023	ps117	L44747	-	prophage ps1 protein 17
45	 32.82	0	45053..45247	+	64	15672024	ps118	L45035	-	hypothetical protein
46	 29.63	-1	45399..45641	+	80	15672025	ps119	L45351	-	prophage ps1 protein 19
47	 31.56	-1	45777..46001	+	74	15672026	ps120	L45702	-	prophage ps1 protein 20
48	 30.61	-1	46648..46794	+	48	30023971	-	L200003	-	hypothetical protein
49	 40.74	+1	47370..47585	+	71	15672027	ps121	L47364	-	prophage ps1 protein 21
50	 34.55	0	47702..47866	+	54	30023972	-	L200004	-	bacteriophage bIL310 Orf3
51	 33.66	0	47988..48293	+	101	15672028	ps122	L47979	-	prophage ps1 protein 22
52	 36.71	0	48543..49727	+	394	15672029	ps123	L48477	-	integrase
53	 30.00	-1	50180..50629	+	149	15672030	yafE	L50174	-	hypothetical protein
54	 34.98	0	50706..50948	+	80	15672031	yafF	L50682	-	hypothetical protein
55	 35.21	0	51029..52411	-	460	15672032	yafB	L1004	-	sulfate transporter
56	 34.41	0	52656..53027	+	123	15672033	yafG	L52494	-	hypothetical protein
57	 34.36	0	53161..53844	+	227	15672034	-	L0466	-	IS1077A transposase
58	 38.85	0	53900..54661	-	253	15672035	tra904A	L0457	-	transposase of IS904A
59	 37.80	0	54757..55047	-	96	15672036	yafI	L54760	-	hypothetical protein
60	 41.67	+1	55126..55389	-	87	15672037	yafJ	L55129	-	hypothetical protein
61	 32.38	0	55599..56120	+	173	15672038	yafC	L1005	-	hypothetical protein
62	 37.07	0	56584..57759	+	391	15672039	araT	L56488	-	aromatic amino acid aminotransferase
63	 34.13	0	57858..58613	+	251	15672040	recO	L1006	-	DNA repair protein RecO
64	 39.25	+1	58971..60389	-	472	15672041	pdhD	L0036	-	dihydrolipoamide dehydrogenase
65	 40.59	+1	60583..62181	-	532	15672042	pdhC	L0035	-	dihydrolipoamide acetyltransferase component of PDH complex
66	 40.98	+1	62174..63154	-	326	15672043	pdhB	L0034	-	PDH E1 component beta subunit
67	 41.33	+1	63157..64281	-	374	15672044	pdhA	L0033	-	PDH E1 component alpha subunit
68	 37.92	0	64370..65371	-	333	15672045	lplL	L64373	-	lipoate-protein ligase
69	 33.92	0	65571..66416	-	281	15672046	yagA	L1007	-	hypothetical protein
70	 31.49	-1	66497..67147	-	216	15672047	yagB	L1008	-	hypothetical protein
71	 38.79	0	67264..68289	-	341	15672048	trpS	L0358	-	tryptophanyl-tRNA synthetase II
72	 38.81	0	68791..69228	+	145	15672049	osmC	L68759	-	osmotically inducible protein
73	 35.54	0	69389..70702	+	437	15672050	yagE	L69353	-	amino acid permease
74	 25.64	-2	70762..71112	+	116	15672051	yahC	L70747	-	hypothetical protein
75	 39.86	+1	71171..72166	-	331	15672052	plsX	L71174	-	putative glycerol-3-phosphate acyltransferase PlsX
76	 35.42	0	72269..73081	-	270	15672053	yahA	L1009	-	hypothetical protein
77	 38.16	0	73207..74844	-	545	15672054	yahG	L73210	-	ABC transporter ATP binding protein
78	 39.89	+1	75972..77252	-	426	15672055	cysD	L75975	-	O-acetylhomoserine sulfhydrylase
79	 38.97	0	77479..78312	-	277	15672056	yahI	L77482	-	short-chain type dehydrogenase
80	 38.03	0	78713..79180	+	155	15672057	yahB	L1010	-	hypothetical protein
81	 31.31	-1	79309..79506	+	65	30023973	-	L200005	-	hypothetical protein
82	 35.59	0	79537..80157	+	206	15672058	yahD	L79507	-	hypothetical protein
83	 38.72	0	80208..81377	+	389	15672059	yaiA	L80191	-	hypothetical protein
84	 38.41	0	81388..81978	+	196	15672060	yaiB	L81206	-	hypothetical protein
85	 35.75	0	82576..84723	+	715	15672061	lcnC	L82520	-	lactococcin A ABC transporter ATP binding and permease protein
86	 35.58	0	84738..86159	+	473	15672062	lcnD	L84721	-	lactococcin A ABC transporter permease protein
87	 26.27	-2	86620..87072	+	150	15672063	yaiE	L86606	-	transporter
88	 27.70	-2	87111..87767	+	218	15672064	yaiF	L87100	-	hypothetical protein
89	 31.91	-1	87870..88151	-	93	15672065	yaiI	L87874	-	hypothetical protein
90	 44.44	+2	88161..88313	-	50	30023974	yaiJ	L200006	-	hypothetical protein
91	 30.14	-1	88652..88870	+	72	15672066	yaiG	L88635	-	hypothetical protein
92	 26.02	-2	89117..89827	+	236	15672067	yaiH	L89118	-	hypothetical protein
93	 26.49	-2	90253..90705	+	150	15672068	yajA	L90239	-	transporter
94	 36.19	0	91052..91891	-	279	15672069	tra981A	L0432	-	transposase of IS981A
95	 36.78	0	91903..92163	-	86	15672070	yajE	L186703	-	transposase
96	 28.05	-2	92200..92805	-	201	15672071	yajF	L92204	-	hypothetical protein
97	 36.40	0	93882..94142	-	86	15672072	yajG	L93886	-	transposase
98	 26.02	-2	94253..94621	+	122	15672073	yajB	L94197	-	hypothetical protein
99	 28.71	-1	94841..95143	-	100	15672074	yajH	L94845	-	hypothetical protein
100	 31.33	-1	95879..96028	-	49	15672075	rpmG	L0096	-	50S ribosomal protein L33
35.64	MEAN

3.56	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.