IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.57   STD DEV: 4.21
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282
2799 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.84	-1	170..616	+	148	119382758	-	Pden_0001	-	hypothetical protein
2	 59.54	-1	709..2013	+	434	119382759	rho	Pden_0002	-	transcription termination factor Rho
3	 61.83	-1	2030..3289	+	419	119382760	-	Pden_0003	-	tRNA modification GTPase TrmE
4	 59.68	-1	3298..5157	+	619	119382761	-	Pden_0004	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
5	 57.90	-2	5157..5738	+	193	119382762	-	Pden_0005	-	methyltransferase GidB
6	 60.88	-1	5731..6507	+	258	119382763	-	Pden_0006	-	cobyrinic acid a,c-diamide synthase
7	 61.66	-1	6517..7395	+	292	119382764	-	Pden_0007	-	parB-like partition proteins
8	 66.30	0	7526..8065	-	179	119382765	-	Pden_0008	-	GrpE protein
9	 64.39	0	8073..9128	-	351	119382766	hrcA	Pden_0009	-	heat-inducible transcription repressor
10	 67.36	0	9211..9936	+	241	119382767	-	Pden_0010	-	ribonuclease PH
11	 67.66	0	9924..10529	+	201	119382768	-	Pden_0011	-	putative deoxyribonucleotide triphosphate pyrophosphatase
12	 64.80	0	10522..10896	+	124	119382769	-	Pden_0012	-	endoribonuclease L-PSP
13	 69.54	0	10905..12089	+	394	119382770	-	Pden_0013	-	coproporphyrinogen III oxidase
14	 70.06	0	12091..12444	+	117	119382771	-	Pden_0014	-	hypothetical protein
15	 65.13	0	12535..13119	+	194	119382772	-	Pden_0015	-	glutathione-dependent formaldehyde-activating enzyme
16	 64.72	0	13223..14350	+	375	119382773	-	Pden_0016	-	alcohol dehydrogenase
17	 64.62	0	14426..15061	+	211	119382774	-	Pden_0017	-	endopeptidase Clp
18	 65.13	0	15058..15579	+	173	119382775	-	Pden_0018	-	GCN5-related N-acetyltransferase
19	 64.40	0	15576..16415	+	279	119382776	-	Pden_0019	-	carboxylesterase
20	 63.62	0	16615..18417	+	600	119382777	-	Pden_0020	-	Pyrrolo-quinoline quinone
21	 65.35	0	18519..19199	+	226	119382778	-	Pden_0021	-	hypothetical protein
22	 66.17	0	19196..20008	+	270	119382779	-	Pden_0022	-	extracellular solute-binding protein
23	 69.87	0	20005..20535	+	176	119382780	-	Pden_0023	-	rhodanese
24	 64.67	0	20567..21118	-	183	119382781	-	Pden_0024	-	hypothetical protein
25	 65.59	0	21122..21679	-	185	119382782	-	Pden_0025	-	hypothetical protein
26	 66.92	0	21795..22982	+	395	119382783	-	Pden_0026	-	hypothetical protein
27	 64.09	0	22991..23962	+	323	119382784	-	Pden_0027	-	YVTN beta-propeller repeat-containing protein
28	 65.96	0	23986..24555	+	189	119382785	-	Pden_0028	-	hypothetical protein
29	 70.56	0	24593..25312	+	239	119382786	-	Pden_0029	-	ABC transporter related
30	 63.37	0	25309..26127	+	272	119382787	-	Pden_0030	-	ABC-2 type transporter
31	 66.84	0	26124..26714	+	196	119382788	-	Pden_0031	-	hypothetical protein
32	 70.98	+1	26711..27313	+	200	119382789	-	Pden_0032	-	molybdopterin-guanine dinucleotide biosynthesis protein A
33	 68.44	0	27310..28041	-	243	119382790	-	Pden_0033	-	binding-protein-dependent transport systems inner membrane component
34	 71.41	+1	28038..28796	-	252	119382791	-	Pden_0034	-	ABC transporter related
35	 67.56	0	28793..29467	-	224	119382792	-	Pden_0035	-	TenA family transcription regulator
36	 65.43	0	29464..30435	-	323	119382793	-	Pden_0036	-	NlpA lipoprotein
37	 71.86	+1	30432..31394	-	320	119382794	-	Pden_0037	-	UBA/THIF-type NAD/FAD binding protein
38	 67.34	0	31391..31987	-	198	119382795	thiE	Pden_0038	-	thiamine-phosphate pyrophosphorylase
39	 69.41	0	31984..32748	-	254	119382796	thiG	Pden_0039	-	thiazole synthase
40	 71.72	+1	32750..32947	-	65	119382797	-	Pden_0040	-	thiamine biosynthesis protein ThiS
41	 70.04	0	32931..33908	-	325	119382798	-	Pden_0041	-	FAD dependent oxidoreductase
42	 71.35	+1	33905..34759	-	284	119382799	-	Pden_0042	-	phosphomethylpyrimidine kinase
43	 67.66	0	35028..35630	+	200	119382800	-	Pden_0043	-	HAD family hydrolase
44	 62.26	-1	35726..36292	+	188	119382801	-	Pden_0044	-	hypothetical protein
45	 64.83	0	36357..36791	-	144	119382802	-	Pden_0045	-	3-dehydroquinate dehydratase, type II
46	 68.66	0	36818..37519	-	233	119382803	-	Pden_0046	-	two component transcriptional regulator
47	 70.18	0	37512..39392	-	626	119382804	-	Pden_0047	-	PAS/PAC sensor hybrid histidine kinase
48	 65.10	0	39505..41481	+	658	119382805	-	Pden_0048	-	AMP-dependent synthetase and ligase
49	 62.84	0	41478..42287	+	269	119382806	-	Pden_0049	-	ABC transporter related
50	 64.53	0	42298..43278	+	326	119382807	-	Pden_0050	-	inner-membrane translocator
51	 63.96	0	43354..44460	+	368	119382808	-	Pden_0051	-	inner-membrane translocator
52	 63.31	0	44505..45785	+	426	119382809	-	Pden_0052	-	Fis family transcriptional regulator
53	 64.85	0	45839..46663	+	274	119382810	-	Pden_0053	-	ABC transporter related
54	 68.39	0	46682..47899	+	405	119382811	-	Pden_0054	-	phenylacetate-CoA ligase, putative
55	 60.32	-1	48379..48504	-	41	119382812	-	Pden_0055	-	ribosomal protein L36
56	 70.02	0	48847..49710	+	287	119382813	-	Pden_0056	-	N-formylglutamate amidohydrolase
57	 67.79	0	49729..50616	+	295	119382814	-	Pden_0057	-	band 7 protein
58	 67.93	0	50750..51301	+	183	119382815	-	Pden_0058	-	NUDIX hydrolase
59	 68.41	0	51353..51982	+	209	119382816	-	Pden_0059	-	glutathione S-transferase domain-containing protein
60	 71.63	+1	51983..52687	-	234	119382817	-	Pden_0060	-	orotidine 5'-phosphate decarboxylase
61	 64.86	0	52790..53563	+	257	119382818	-	Pden_0061	-	hypothetical protein
62	 66.44	0	53670..56297	+	875	119382819	-	Pden_0062	-	ATPase
63	 65.33	0	56428..57324	+	298	119382820	-	Pden_0063	-	putative sulfite oxidase subunit YedY
64	 63.96	0	57324..57950	+	208	119382821	-	Pden_0064	-	ferric reductase domain-containing protein
65	 55.67	-2	57925..58224	+	99	119382822	-	Pden_0065	-	hypothetical protein
66	 58.63	-1	64006..64503	-	165	119382823	-	Pden_0066	-	hypothetical protein
67	 65.52	0	64712..65059	+	115	119382824	-	Pden_0067	-	IS66 Orf2 family protein
68	 64.83	0	65122..66750	+	542	119382825	-	Pden_0068	-	transposase IS66
69	 58.92	-1	66750..67046	+	98	119382826	-	Pden_0069	-	hypothetical protein
70	 57.61	-2	67024..67266	-	80	119382827	-	Pden_0070	-	hypothetical protein
71	 55.43	-2	67303..67578	+	91	119382828	-	Pden_0071	-	hypothetical protein
72	 64.76	0	67679..69196	+	505	119382829	-	Pden_0072	-	CHAD domain-containing protein
73	 60.93	-1	69196..69945	+	249	119382830	-	Pden_0073	-	cobyrinic acid a,c-diamide synthase
74	 66.23	0	69942..70397	+	151	119382831	-	Pden_0074	-	adenylate cyclase
75	 60.76	-1	70419..70706	-	95	119382832	-	Pden_0075	-	hypothetical protein
76	 51.94	-2	70813..71199	-	128	119382833	-	Pden_0076	-	hypothetical protein
77	 62.86	0	71248..71667	+	139	119382834	-	Pden_0077	-	transposase
78	 61.40	-1	71795..72022	+	75	119382835	-	Pden_0078	-	putative transposase
79	 63.60	0	72151..72867	+	238	119382836	-	Pden_0079	-	two component transcriptional regulator
80	 64.62	0	72869..75208	+	779	119382837	-	Pden_0080	-	PAS/PAC sensor hybrid histidine kinase
81	 61.19	-1	75555..77324	+	589	119382838	-	Pden_0081	-	regulatory protein, LuxR
82	 60.58	-1	77426..77737	+	103	119382839	-	Pden_0082	-	hypothetical protein
83	 58.26	-1	77791..78135	-	114	119382840	-	Pden_0083	-	hypothetical protein
84	 62.75	0	78314..78568	+	84	119382841	-	Pden_0084	-	hypothetical protein
85	 62.32	-1	79049..79255	+	68	119382842	-	Pden_0085	-	hypothetical protein
86	 60.14	-1	79239..79514	+	91	119382843	-	Pden_0086	-	hypothetical protein
87	 68.35	0	79557..80267	+	236	119382844	-	Pden_0087	-	acylneuraminate cytidylyltransferase
88	 69.44	0	80264..81310	+	348	119382845	-	Pden_0088	-	flagellin modification protein FlmD
89	 55.56	-2	81485..82816	+	443	119382846	-	Pden_0089	-	hypothetical protein
90	 58.43	-1	82819..83619	+	266	119382847	-	Pden_0090	-	hypothetical protein
91	 62.16	-1	83710..84885	-	391	119382848	-	Pden_0091	-	hypothetical protein
92	 64.32	0	85055..86716	-	553	119382849	-	Pden_0092	-	hypothetical protein
93	 60.18	-1	86854..87855	-	333	119382850	-	Pden_0093	-	polysaccharide biosynthesis protein CapD
94	 63.96	0	88201..88311	-	36	119382851	-	Pden_0094	-	transposase IS116/IS110/IS902
95	 60.88	-1	88450..89019	-	189	119382852	-	Pden_0095	-	resolvase domain-containing protein
96	 61.70	-1	89344..89625	+	93	119382853	-	Pden_0096	-	hypothetical protein
97	 67.60	0	89793..90434	-	213	119382854	-	Pden_0097	-	hypothetical protein
98	 59.76	-1	90443..90688	-	81	119382855	-	Pden_0098	-	conjugal transfer TraD family protein
99	 65.19	0	90690..91028	-	112	119382856	-	Pden_0099	-	hypothetical protein
100	 65.53	0	91189..94185	+	998	119382857	-	Pden_0100	-	MobA/MobL protein
66.57	MEAN

4.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.