IslandPath Analysis: Francisella tularensis subsp. holarctica FTNF002-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.53   STD DEV: 3.43
Francisella tularensis subsp. holarctica FTNF002-00, complete genome - 1..1890909
1580 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.30	0	1..1476	+	491	169656467	dnaA	FTA_0001	-	chromosomal replication initiator protein
2	 27.90	-1	1513..2616	+	367	156501372	dnaN	FTA_0003	-	DNA polymerase III, beta subunit
3	 26.48	-1	2613..3050	-	145	156501371	-	FTA_0002	-	putative MFS transporter protein
4	 31.56	0	3062..3942	-	293	169656468	-	FTA_0004	-	transposase ISFTu1
5	 37.25	+1	6630..6833	-	67	156501378	-	FTA_0009	-	hypothetical protein
6	 34.85	0	6907..7830	+	307	169656469	-	FTA_0010	-	S49 family peptidase
7	 35.24	0	7884..8459	+	191	156501380	-	FTA_0011	-	Omp-H like outer membrane protein
8	 30.26	0	8595..9017	+	140	156501381	-	FTA_0012	-	rhodanese-like domain-containing protein
9	 35.78	0	9044..9493	+	149	156501382	secB1	FTA_0013	-	preprotein translocase subunit SecB
10	 38.33	+1	9515..10594	+	359	156501383	recA	FTA_0014	-	recombinase A
11	 27.59	-1	10581..11033	+	150	156501384	recX	FTA_0015	-	regulatory protein RecX
12	 34.17	0	11206..11682	+	158	156501385	-	FTA_0016	-	single-stranded DNA binding protein
13	 34.03	0	11788..12942	+	384	156501386	ackA	FTA_0017	-	acetate kinase
14	 35.62	0	12952..15048	+	698	169656470	-	FTA_0018	-	phosphate acetyltransferase
15	 31.44	0	15960..16840	-	293	169656471	-	FTA_0020	-	transposase ISFtu1
16	 34.91	0	17335..19107	-	590	156501393	aspS	FTA_0024	-	aspartyl-tRNA synthetase
17	 34.09	0	19281..20462	-	393	156501394	-	FTA_0025	-	major facilitator transporter
18	 31.44	0	21104..21984	+	293	169656472	-	FTA_0028	-	transposase ISFtu1
19	 23.39	-2	22210..22380	-	56	169656790	-	FTA_2141	-	hypothetical protein
20	 29.82	0	22931..24154	-	407	156501400	-	FTA_0031	-	amino acid transporter
21	 24.36	-2	24481..24714	-	77	156501401	-	FTA_0032	-	hypothetical protein
22	 32.68	0	26097..27017	-	306	156501404	pyrB	FTA_0035	-	aspartate carbamoyltransferase
23	 36.53	+1	27159..30443	-	1094	156501405	carB	FTA_0036	-	carbamoyl phosphate synthase large subunit
24	 37.28	+1	30448..31614	-	388	156501406	carA	FTA_0037	-	carbamoyl phosphate synthase small subunit
25	 33.90	0	32031..33086	+	351	156501407	-	FTA_0038	-	acid phosphatase
26	 30.40	0	33210..33890	-	226	156501408	-	FTA_0039	-	thiopurine S-methyltransferase
27	 38.38	+1	34022..35368	+	448	156501409	pyrC	FTA_0040	-	dihydroorotase
28	 25.94	-1	35396..36436	-	346	156501410	-	FTA_0041	-	hypothetical protein
29	 32.61	0	37640..38191	+	183	156501412	-	FTA_0043	-	hypothetical protein
30	 31.62	0	38307..39359	-	350	156501413	-	FTA_0044	-	hypothetical protein
31	 28.05	-1	39346..40311	-	321	156501414	-	FTA_0045	-	HlyD family secretion protein
32	 28.92	-1	40400..40807	-	135	156501415	-	FTA_0046	-	lipoprotein
33	 31.49	0	40933..41802	+	289	156501416	-	FTA_0047	-	LysR family transcriptional regulator
34	 34.68	0	41803..42174	-	123	156501417	-	FTA_0048	-	SOUL heme-binding protein
35	 31.16	0	42338..42475	+	45	156501419	-	FTA_0050	-	hypothetical protein
36	 30.28	0	42464..43117	-	217	156501418	-	FTA_0049	-	transposase ISFTu2
37	 31.69	0	43429..43977	+	182	156501420	-	FTA_0051	-	chorismate mutase
38	 35.84	0	44032..47265	-	1077	156501421	-	FTA_0052	-	transglutaminase-like superfamily protein
39	 35.07	0	47685..48317	+	210	169656473	pyrF	FTA_0053	-	orotidine 5'-phosphate decarboxylase
40	 33.73	0	48307..49065	+	252	156501423	-	FTA_0054	-	dihydroorotate dehydrogenase
41	 31.05	0	50528..50965	-	145	156501426	dtd	FTA_0057	-	D-tyrosyl-tRNA deacylase
42	 31.51	0	52459..53883	-	474	169656474	-	FTA_0060	-	glycosy hydrolase family protein
43	 31.44	0	54142..55022	-	293	169656475	-	FTA_0061	-	transposase ISFTu1
44	 29.89	0	55046..55597	-	183	169656476	-	FTA_0063	-	hypothetical protein
45	 34.68	0	55868..56533	-	221	156501433	-	FTA_0064	-	nitroreductase family protein
46	 33.77	0	56936..57628	+	230	156501435	-	FTA_0066	-	hypothetical protein
47	 33.17	0	57625..58830	-	401	156501434	-	FTA_0065	-	tryptophan/tyrosine permease family protein
48	 31.55	0	58930..59547	+	205	156501436	gidB	FTA_0067	-	methyltransferase/glucose inhibited cell division protein B
49	 33.03	0	59544..60212	+	222	156501438	-	FTA_0069	-	hypothetical protein
50	 31.75	0	60205..61089	-	294	156501437	-	FTA_0068	-	hypothetical protein
51	 29.60	0	61291..61986	-	231	156501439	-	FTA_0070	-	LysR family transcriptional regulator
52	 20.45	-2	62145..62276	+	43	156501440	-	FTA_0071	-	hypothetical protein
53	 30.52	0	62289..63425	+	378	156501441	-	FTA_0072	-	major facilitator transporter
54	 35.01	0	65949..66545	+	198	156501445	gmhA	FTA_0076	-	phosphoheptose isomerase
55	 29.97	0	66553..66909	+	118	156501446	-	FTA_0077	-	Smp A/Oml family membrane lipoprotein
56	 33.70	0	66983..67255	-	90	156501447	rpsT	FTA_0078	-	30S ribosomal protein S20
57	 37.65	+1	67525..69309	+	594	156501448	lepA	FTA_0079	-	GTP-binding protein LepA
58	 36.57	+1	69323..70402	+	359	156501449	trmU	FTA_0080	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
59	 33.94	0	70422..71414	-	330	156501450	-	FTA_0081	-	lipoprotein
60	 33.14	0	71496..72020	-	174	156501451	def1	FTA_0082	-	peptide deformylase
61	 35.36	0	72017..72460	-	147	156501452	ribH	FTA_0083	-	6,7-dimethyl-8-ribityllumazine synthase
62	 35.64	0	72470..73681	-	403	156501453	ribAB	FTA_0084	-	bifunctional riboflavin biosynthesis protein
63	 31.02	0	73674..74279	-	201	156501454	ribE	FTA_0085	-	riboflavin synthase subunit alpha
64	 34.08	0	74272..75339	-	355	156501455	ribD	FTA_0086	-	riboflavin biosynthesis protein
65	 32.17	0	76510..77339	-	276	169656477	-	FTA_0088	-	transposase ISFTu1
66	 35.64	0	77583..78233	-	216	156501459	-	FTA_0090	-	major facilitator transporter
67	 32.36	0	78312..78827	-	171	156501460	-	FTA_0091	-	B-type cytochrome subunit
68	 32.73	0	79877..81028	+	383	156501463	nhaA	FTA_0094	-	Na+/H+ antiporter
69	 29.72	0	81093..81812	+	239	156501464	-	FTA_0095	-	hypothetical protein
70	 34.28	0	81818..82558	-	246	169656478	-	FTA_0096	-	acetyltransferase protein
71	 33.73	0	82572..83324	-	250	169656479	-	FTA_0097	-	acetyltransferase protein
72	 37.04	+1	83487..83810	-	107	169656480	-	FTA_0098	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
73	 31.15	0	84042..84683	+	213	156501468	-	FTA_0099	-	hypothetical protein
74	 35.49	0	85416..86576	-	386	156501470	purT	FTA_0101	-	phosphoribosylglycinamide formyltransferase 2
75	 36.07	+1	86630..88822	-	730	156501471	-	FTA_0102	-	putative chitinase
76	 35.85	0	89073..91652	-	859	156501472	-	FTA_0103	-	AAA family ATPase
77	 29.66	0	92598..92951	+	117	169656481	-	FTA_0105	-	hypothetical protein
78	 35.43	0	93006..93815	-	269	156501475	trpA	FTA_0106	-	tryptophan synthase subunit alpha
79	 39.46	+2	93815..95005	-	396	156501476	trpB	FTA_0107	-	tryptophan synthase subunit beta
80	 31.14	0	95092..96597	-	501	169656482	-	FTA_0108	-	M32 family metallocarboxypeptidase
81	 35.77	0	96533..97927	-	464	169656483	-	FTA_0109	-	chloride channel transport protein
82	 32.85	0	98422..98832	-	136	156501480	-	FTA_0111	-	hypothetical protein
83	 31.55	0	98853..99245	-	130	156501481	-	FTA_0112	-	lipoprotein
84	 31.44	0	100047..100927	+	293	169656484	-	FTA_0114	-	transposase ISFTu1
85	 29.78	0	100928..101800	-	290	156501485	-	FTA_0116	-	major facilitator transporter
86	 32.25	0	102588..103142	+	184	156501488	iglA1	FTA_0119	-	intracellular growth locus, subunit A
87	 31.10	0	103156..104676	+	506	156501489	iglB1	FTA_0120	-	intracellular growth locus, subunit B
88	 34.43	0	104687..105322	+	211	156501490	iglC1	FTA_0121	-	intracellular growth locus subunit C
89	 29.16	0	105343..106539	+	398	156501491	iglD1	FTA_0122	-	intracellular growth locus subunit D
90	 24.48	-2	106546..107121	-	191	156501492	-	FTA_0123	-	hypothetical protein
91	 26.41	-1	107139..111125	-	1328	156501493	pdpC1	FTA_0124	-	pathogenicity determinant protein, pdpC
92	 23.51	-2	111165..111938	-	257	156501494	-	FTA_0125	-	hypothetical protein
93	 26.22	-1	111904..113055	-	383	156501495	-	FTA_0126	-	hypothetical protein
94	 27.88	-1	113077..113700	-	207	156501496	-	FTA_0127	-	hypothetical protein
95	 26.14	-1	113713..115143	-	476	156501497	-	FTA_0128	-	hypothetical protein
96	 33.14	0	115156..115677	-	173	169656485	-	FTA_0129	-	hypothetical protein
97	 30.10	0	117414..117908	-	164	156501500	-	FTA_0131	-	hypothetical protein
98	 23.81	-2	117921..118298	-	125	156501501	-	FTA_0132	-	lipoprotein
99	 25.99	-1	118288..121569	-	1093	156501502	pdpB1	FTA_0133	-	pathogenicity deteminant protein pdpB
100	 27.00	-1	121574..124036	-	820	156501503	pdpA1	FTA_0134	-	pathogenicity deteminant protein pdpA
32.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.