IslandPath Analysis: Acidobacteria bacterium Ellin345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.57   STD DEV: 2.67
Acidobacteria bacterium Ellin345, complete genome - 1..5650368
4777 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.85	0	33..1418	+	461	94967032	-	Acid345_0001	-	chromosomal replication initiator protein DnaA
2	 54.84	-1	1811..2926	+	371	94967033	-	Acid345_0002	-	DNA polymerase III, beta subunit
3	 61.97	+1	2996..3931	+	311	94967034	-	Acid345_0003	-	glucokinase
4	 57.33	0	3928..4977	+	349	94967035	-	Acid345_0004	-	glutamine-fructose-6-phosphate transaminase (isomerizing)
5	 57.03	0	4984..6249	+	421	94967036	-	Acid345_0005	-	major facilitator transporter
6	 55.88	-1	6357..6773	+	138	94967037	-	Acid345_0006	-	large conductance mechanosensitive channel protein
7	 57.64	0	7066..7464	-	132	94967038	-	Acid345_0007	-	hypothetical protein
8	 57.46	0	8277..10916	+	879	94967039	-	Acid345_0008	-	DNA gyrase subunit B
9	 58.26	0	11118..13151	+	677	94967040	-	Acid345_0009	-	endothelin-converting protein 1
10	 59.36	0	13474..13911	+	145	94967041	-	Acid345_0010	-	hypothetical protein
11	 57.35	0	14112..15593	+	493	94967042	-	Acid345_0011	-	hypothetical protein
12	 58.49	0	15673..16821	+	382	94967043	-	Acid345_0012	-	hypothetical protein
13	 60.11	0	16925..17656	+	243	94967044	-	Acid345_0013	-	hypothetical protein
14	 61.59	+1	17749..18162	-	137	94967045	-	Acid345_0014	-	hypothetical protein
15	 57.72	0	18300..18869	-	189	94967046	-	Acid345_0015	-	TetR family transcriptional regulator
16	 60.40	0	18980..19936	+	318	94967047	-	Acid345_0016	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
17	 57.28	0	19887..20291	-	134	94967048	-	Acid345_0017	-	hypothetical protein
18	 58.84	0	20559..20954	+	131	94967049	-	Acid345_0018	-	50S ribosomal protein L21P
19	 62.45	+1	20966..21226	+	86	94967050	rpmA	Acid345_0019	-	50S ribosomal protein L27
20	 61.02	0	21328..22425	+	365	94967051	obgE	Acid345_0020	-	GTPase ObgE
21	 57.53	0	22422..23198	+	258	94967052	-	Acid345_0021	-	nicotinate-nucleotide adenylyltransferase
22	 57.11	0	23235..23726	+	163	94967053	-	Acid345_0022	-	Iojap-related protein
23	 61.67	+1	23738..24697	+	319	94967054	-	Acid345_0023	-	sigma-54 dependent trancsriptional regulator
24	 57.37	0	24743..25183	+	146	94967055	-	Acid345_0024	-	hypothetical protein
25	 59.44	0	25183..25749	+	188	94967056	-	Acid345_0025	-	hypothetical protein
26	 57.07	0	25751..26500	-	249	94967057	-	Acid345_0026	-	short-chain dehydrogenase/reductase SDR
27	 56.17	0	26594..26917	-	107	94967058	-	Acid345_0027	-	ArsR family transcriptional regulator
28	 56.00	0	27088..27312	+	74	94967059	-	Acid345_0028	-	50S ribosomal protein L31P
29	 57.09	0	27354..27635	-	93	94967060	-	Acid345_0029	-	hypothetical protein
30	 61.28	+1	27676..28788	+	370	94967061	-	Acid345_0030	-	dihydrouridine synthase TIM-barrel protein nifR3
31	 59.15	0	28785..29210	-	141	94967062	-	Acid345_0031	-	hypothetical protein
32	 58.00	0	29312..29611	+	99	94967063	-	Acid345_0032	-	hypothetical protein
33	 58.37	0	29683..30369	+	228	94967064	-	Acid345_0033	-	HAD family hydrolase
34	 56.67	0	30366..30665	-	99	94967065	-	Acid345_0034	-	type I antifreeze protein
35	 59.14	0	30752..31615	+	287	94967066	-	Acid345_0035	-	hypothetical protein
36	 57.17	0	31619..32092	-	157	94967067	-	Acid345_0036	-	L-asparaginase
37	 59.48	0	32449..34701	+	750	94967068	-	Acid345_0037	-	serine/threonine protein kinase
38	 56.29	0	34756..35844	-	362	94967069	-	Acid345_0038	-	TonB-like protein
39	 56.13	0	35844..36707	-	287	94967070	-	Acid345_0039	-	beta-lactamase-like protein
40	 58.75	0	36791..37687	-	298	94967071	-	Acid345_0040	-	chromosome segregation DNA-binding protein
41	 56.33	0	37699..38520	-	273	94967072	-	Acid345_0041	-	chromosome segregation ATPase
42	 58.48	0	38797..39456	-	219	94967073	-	Acid345_0042	-	methyltransferase GidB
43	 58.88	0	39495..40175	+	226	94967074	-	Acid345_0043	-	hypothetical protein
44	 54.17	-1	40290..40745	+	151	94967075	-	Acid345_0044	-	hypothetical protein
45	 57.46	0	40785..41849	-	354	94967076	-	Acid345_0045	-	adenosine deaminase
46	 58.23	0	41854..43299	-	481	94967077	-	Acid345_0046	-	amino acid permease-associated region
47	 59.65	0	43956..46505	-	849	94967078	-	Acid345_0047	-	ATP-dependent DNA helicase Rep
48	 57.87	0	46847..47653	-	268	94967079	-	Acid345_0048	-	hypothetical protein
49	 60.00	0	47595..48029	-	144	94967080	-	Acid345_0049	-	hypothetical protein
50	 58.95	0	48026..48958	-	310	94967081	-	Acid345_0050	-	polysaccharide deacetylase
51	 62.24	+1	49043..50599	+	518	94967082	-	Acid345_0051	-	glutamyl-tRNA synthetase / glutamate--tRNA(Gln) ligase
52	 57.76	0	50853..51200	-	115	94967083	-	Acid345_0052	-	hypothetical protein
53	 56.67	0	51200..51559	-	119	94967084	-	Acid345_0053	-	hypothetical protein
54	 57.06	0	51556..51909	-	117	94967085	-	Acid345_0054	-	hypothetical protein
55	 58.75	0	51930..52826	-	298	94967086	-	Acid345_0055	-	hypothetical protein
56	 59.00	0	52837..55080	-	747	94967087	-	Acid345_0056	-	peptidase S9B, dipeptidylpeptidase IV-like
57	 60.95	0	55120..56361	-	413	94967088	-	Acid345_0057	-	UvrB/UvrC protein
58	 57.45	0	56939..57220	-	93	94967089	-	Acid345_0058	-	hypothetical protein
59	 49.82	-2	57238..58062	-	274	94967090	-	Acid345_0059	-	hypothetical protein
60	 60.92	0	58072..58854	-	260	94967091	-	Acid345_0060	-	DNA replication protein, DNAC-like
61	 61.05	0	59076..59360	+	94	94967092	-	Acid345_0061	-	hypothetical protein
62	 60.93	0	59402..60796	+	464	94967093	-	Acid345_0062	-	tRNA(Ile)-lysidine synthetase-like
63	 59.64	0	60793..61347	+	184	94967094	-	Acid345_0063	-	phosphoribosyltransferase
64	 60.40	0	61544..63457	+	637	94967095	-	Acid345_0064	-	FtsH peptidase
65	 57.27	0	64148..64924	+	258	94967096	-	Acid345_0065	-	Crp/FNR family transcriptional regulator
66	 57.58	0	65299..66486	-	395	94967097	-	Acid345_0066	-	histidine kinase
67	 56.66	0	66467..68065	-	532	94967098	-	Acid345_0067	-	putative circadian clock protein, KaiC
68	 61.11	0	68435..68704	+	89	94967099	-	Acid345_0068	-	hypothetical protein
69	 57.48	0	69030..70118	-	362	94967100	-	Acid345_0069	-	beta-lactamase-like
70	 57.59	0	70249..71427	+	392	94967101	-	Acid345_0070	-	acyltransferase 3
71	 60.30	0	71503..72429	+	308	94967102	-	Acid345_0071	-	hypothetical protein
72	 62.92	+1	72508..75312	-	934	94967103	-	Acid345_0072	-	response regulator receiver protein
73	 60.78	0	75499..76992	-	497	94967104	-	Acid345_0073	-	DNA uptake lipoprotein-like
74	 58.96	0	77217..77891	-	224	94967105	-	Acid345_0074	-	ribulose-5-phosphate 3-epimerase
75	 58.97	0	77989..78339	-	116	94967106	-	Acid345_0075	-	glyoxalase/bleomycin resistance protein/dioxygenase
76	 61.76	+1	78524..78910	+	128	94967107	-	Acid345_0076	-	hypothetical protein
77	 55.41	-1	79132..79584	+	150	94967108	-	Acid345_0077	-	TonB-like protein
78	 61.23	0	79589..80269	-	226	94967109	-	Acid345_0078	-	TENA/THI-4 protein
79	 53.23	-2	80450..81193	+	247	94967110	-	Acid345_0079	-	PEGA domain-containing protein
80	 60.10	0	81260..83209	+	649	94967111	-	Acid345_0080	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
81	 57.98	0	83277..83771	+	164	94967112	-	Acid345_0081	-	DinB
82	 60.27	0	83951..84247	-	98	94967113	-	Acid345_0082	-	histone-like DNA-binding protein
83	 60.00	0	84580..85074	-	164	94967114	-	Acid345_0083	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
84	 57.85	0	85148..85873	+	241	94967115	-	Acid345_0084	-	response regulator receiver protein
85	 59.95	0	85870..86748	-	292	94967116	lpxC	Acid345_0085	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
86	 60.57	0	87032..88573	+	513	94967117	-	Acid345_0086	-	hypothetical protein
87	 59.52	0	88570..89073	-	167	94967118	-	Acid345_0087	-	hypothetical protein
88	 61.16	0	89263..89898	-	211	94967119	-	Acid345_0088	-	ribonuclease H
89	 50.19	-2	90498..90764	-	88	94967120	-	Acid345_0089	-	hypothetical protein
90	 61.36	+1	90769..91560	-	263	94967121	-	Acid345_0090	-	metallophosphoesterase
91	 62.58	+1	91563..92540	-	325	94967122	-	Acid345_0091	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
92	 58.04	0	93788..94216	-	142	94967123	-	Acid345_0092	-	hypothetical protein
93	 58.76	0	94286..94981	-	231	94967124	-	Acid345_0093	-	ThiJ/PfpI
94	 56.48	0	95369..96733	+	454	94967125	-	Acid345_0094	-	parallel beta-helix repeat-containing protein
95	 56.41	0	96748..97254	-	168	94967126	-	Acid345_0095	-	hypothetical protein
96	 62.14	+1	97525..98319	-	264	94967127	-	Acid345_0096	-	hypothetical protein
97	 58.81	0	98433..98954	+	173	94967128	-	Acid345_0097	-	hypothetical protein
98	 59.83	0	99032..102703	-	1223	94967129	-	Acid345_0098	-	protease-like
99	 63.24	+1	103054..104016	+	320	94967130	-	Acid345_0099	-	selenophosphate synthase
100	 59.52	0	104112..105413	+	433	94967131	-	Acid345_0100	-	hypothetical protein
58.57	MEAN

2.67	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.