IslandPath Analysis: Burkholderia vietnamiensis G4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.40   STD DEV: 5.53
Burkholderia vietnamiensis G4 chromosome 1, complete sequence - 1..3652814
3274 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.03	0	294..1871	+	525	134294129	dnaA	Bcep1808_0001	-	chromosomal replication initiation protein
2	 64.32	0	2040..3146	+	368	134294130	-	Bcep1808_0002	-	DNA polymerase III subunit beta
3	 62.26	0	3340..5814	+	824	134294131	gyrB	Bcep1808_0003	-	DNA gyrase subunit B
4	 60.45	-1	6157..9279	-	1040	134294132	-	Bcep1808_0004	-	HsdR family type I site-specific deoxyribonuclease
5	 52.43	-2	9276..10223	-	315	134294133	-	Bcep1808_0005	-	hypothetical protein
6	 65.45	0	11102..12658	+	518	134294134	-	Bcep1808_0007	-	integrase catalytic subunit
7	 62.27	0	12675..13424	+	249	134294135	-	Bcep1808_0008	-	IstB ATP binding domain-containing protein
8	 60.62	-1	14191..15777	-	528	134294136	-	Bcep1808_0009	-	N-6 DNA methylase
9	 60.93	0	16111..16389	-	92	134294137	-	Bcep1808_0010	-	hypothetical protein
10	 62.65	0	16644..17414	+	256	134294138	-	Bcep1808_0011	-	hypothetical protein
11	 57.70	-1	17414..18160	+	248	134294139	-	Bcep1808_0012	-	hypothetical protein
12	 62.70	0	18956..20191	+	411	134294140	-	Bcep1808_0015	-	transposase IS116/IS110/IS902 family protein
13	 62.95	0	20121..21305	-	394	134294141	-	Bcep1808_0016	-	transposase, mutator type
14	 56.57	-1	21342..22658	-	438	134294142	-	Bcep1808_0017	-	transposase IS3/IS911 family protein
15	 54.74	-2	23088..23414	-	108	134294143	-	Bcep1808_0019	-	hypothetical protein
16	 68.75	0	24413..25468	-	351	134294144	-	Bcep1808_0021	-	integrase catalytic subunit
17	 56.70	-1	26336..26626	-	96	134294145	-	Bcep1808_0022	-	hypothetical protein
18	 66.29	0	32363..32896	-	177	134294146	-	Bcep1808_0023	-	cytochrome B561
19	 71.63	0	32893..33981	-	362	134294147	-	Bcep1808_0024	-	catalase domain-containing protein
20	 68.59	0	34138..34656	+	172	134294148	-	Bcep1808_0025	-	ECF subfamily RNA polymerase sigma-24 factor
21	 67.72	0	34653..35414	+	253	134294149	-	Bcep1808_0026	-	putative transmembrane anti-sigma factor
22	 59.19	-1	35911..37047	-	378	134294150	-	Bcep1808_0027	-	hypothetical protein
23	 56.06	-1	37518..37715	-	65	134294151	-	Bcep1808_0028	-	hypothetical protein
24	 67.82	0	38113..38982	-	289	134294152	-	Bcep1808_0029	-	RNA polymerase sigma factor SigJ
25	 66.88	0	38982..39458	-	158	134294153	-	Bcep1808_0030	-	alkylhydroperoxidase
26	 60.44	-1	39688..40008	+	106	134294154	-	Bcep1808_0031	-	hypothetical protein
27	 69.43	0	40013..41242	+	409	134294155	-	Bcep1808_0032	-	hypothetical protein
28	 69.03	0	41226..42239	+	337	134294156	-	Bcep1808_0033	-	hypothetical protein
29	 73.27	+1	42471..42773	+	100	134294157	-	Bcep1808_0034	-	hypothetical protein
30	 71.37	0	42830..43084	+	84	134294158	-	Bcep1808_0035	-	hypothetical protein
31	 71.88	0	43273..43656	+	127	134294159	-	Bcep1808_0036	-	hypothetical protein
32	 69.05	0	43912..46938	-	1008	134294160	-	Bcep1808_0037	-	type III restriction enzyme, res subunit
33	 68.50	0	46938..48956	-	672	134294161	-	Bcep1808_0038	-	site-specific DNA-methyltransferase (adenine-specific)
34	 66.05	0	49292..50422	-	376	134294162	-	Bcep1808_0039	-	outer membrane protein (porin)-like protein
35	 68.58	0	50702..51379	-	225	134294163	-	Bcep1808_0040	-	two component transcriptional regulator
36	 71.86	0	51394..52761	-	455	134294164	-	Bcep1808_0041	-	integral membrane sensor signal transduction histidine kinase
37	 67.48	0	52842..53699	-	285	134294165	-	Bcep1808_0042	-	binding-protein-dependent transport systems inner membrane component
38	 66.79	0	53745..54542	-	265	134294166	-	Bcep1808_0043	-	ABC transporter related
39	 67.36	0	54667..55671	-	334	134294167	-	Bcep1808_0044	-	ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
40	 68.97	0	55817..56599	-	260	134294168	-	Bcep1808_0045	-	flagellar biosynthetic protein FliR
41	 68.50	0	56628..56900	-	90	134294169	fliQ	Bcep1808_0046	-	flagellar biosynthesis protein FliQ
42	 65.62	0	56916..57677	-	253	134294170	fliP	Bcep1808_0047	-	flagellar biosynthesis protein FliP
43	 77.18	+1	57714..58274	-	186	134294171	-	Bcep1808_0048	-	flagellar biosynthesis protein, FliO
44	 69.80	0	58280..58789	-	169	134294172	-	Bcep1808_0049	-	flagellar motor switch protein FliN
45	 63.66	0	58782..59780	-	332	134294173	fliM	Bcep1808_0050	-	flagellar motor switch protein FliM
46	 68.16	0	59803..60339	-	178	134294174	fliL	Bcep1808_0051	-	flagellar basal body-associated protein FliL
47	 68.60	0	60562..61284	-	240	134294175	-	Bcep1808_0052	-	LrgB family protein
48	 73.79	+1	61298..61774	-	158	134294176	-	Bcep1808_0053	-	LrgA family protein
49	 70.77	0	61913..62839	+	308	134294177	-	Bcep1808_0054	-	LysR family transcriptional regulator
50	 67.82	0	62966..64528	-	520	134294178	-	Bcep1808_0055	-	EmrB/QacA family drug resistance transporter
51	 69.68	0	64704..65201	-	165	134294179	-	Bcep1808_0056	-	MarR family transcriptional regulator
52	 72.79	+1	65375..65668	+	97	134294180	-	Bcep1808_0057	-	hypothetical protein
53	 73.11	+1	65956..67491	+	511	134294181	-	Bcep1808_0058	-	RND efflux system outer membrane lipoprotein
54	 73.26	+1	67520..68308	-	262	134294182	-	Bcep1808_0059	-	hypothetical protein
55	 69.63	0	68340..68846	-	168	134294183	-	Bcep1808_0060	-	general secretion pathway M protein
56	 73.90	+1	68843..70210	-	455	134294184	-	Bcep1808_0061	-	general secretion pathway protein L
57	 70.66	0	70235..71335	-	366	134294185	-	Bcep1808_0062	-	general secretion pathway protein K
58	 72.34	+1	71338..72042	-	234	134294186	-	Bcep1808_0063	-	putative general secretion pathway protein J
59	 69.90	0	72020..72421	-	133	134294187	-	Bcep1808_0064	-	general secretion pathway protein I
60	 73.63	+1	72424..72954	-	176	134294188	-	Bcep1808_0065	-	general secretion pathway protein H
61	 63.80	0	72997..73449	-	150	134294189	-	Bcep1808_0066	-	general secretion pathway protein G
62	 72.02	+1	73623..74033	+	136	134294190	-	Bcep1808_0067	-	hypothetical protein
63	 69.38	0	74064..75281	-	405	134294191	-	Bcep1808_0068	-	general secretion pathway protein F
64	 69.93	0	75286..76785	-	499	134294192	-	Bcep1808_0069	-	general secretory pathway protein E
65	 67.74	0	76782..79106	-	774	134294193	-	Bcep1808_0070	-	general secretion pathway protein D
66	 68.75	0	79219..80274	-	351	134294194	-	Bcep1808_0071	-	integrase catalytic subunit
67	 62.17	0	80547..81080	+	177	134294195	-	Bcep1808_0072	-	lytic transglycosylase, catalytic
68	 66.06	0	81226..82536	+	436	134294196	-	Bcep1808_0073	-	cobalamin synthesis protein, P47K
69	 60.93	0	82677..82955	-	92	134294197	-	Bcep1808_0074	-	histone family protein DNA-binding protein
70	 71.97	+1	83345..85306	+	653	134294198	mnmC	Bcep1808_0075	-	5-methylaminomethyl-2-thiouridine methyltransferase
71	 58.41	-1	85590..85928	+	112	134294199	-	Bcep1808_0076	-	hypothetical protein
72	 65.02	0	85979..87193	+	404	134294200	-	Bcep1808_0077	-	sodium/hydrogen exchanger
73	 63.53	0	87208..88323	+	371	134294201	-	Bcep1808_0078	-	carboxylate-amine ligase
74	 53.33	-2	88333..88647	+	104	134294202	-	Bcep1808_0079	-	hypothetical protein
75	 68.70	0	88828..89466	+	212	134294203	-	Bcep1808_0080	-	MarR family transcriptional regulator
76	 70.89	0	89495..90205	+	236	134294204	-	Bcep1808_0081	-	glutamine amidotransferase
77	 70.98	0	90361..91473	+	370	134294205	-	Bcep1808_0082	-	NADH:flavin oxidoreductase/NADH oxidase
78	 62.34	0	91657..92187	+	176	134294206	-	Bcep1808_0083	-	nuclear protein SET
79	 69.90	0	92329..93813	-	494	134294207	-	Bcep1808_0084	-	integral membrane sensor signal transduction histidine kinase
80	 66.38	0	93943..94635	-	230	134294208	-	Bcep1808_0085	-	two component transcriptional regulator
81	 57.85	-1	94728..94988	+	86	134294209	-	Bcep1808_0086	-	hypothetical protein
82	 65.05	0	95082..95390	-	102	134294210	phhB	Bcep1808_0087	-	pterin-4-alpha-carbinolamine dehydratase
83	 67.89	0	95544..96527	-	327	134294211	phhA	Bcep1808_0088	-	phenylalanine 4-monooxygenase
84	 66.05	0	96577..97062	+	161	134294212	-	Bcep1808_0089	-	AsnC family transcriptional regulator
85	 67.23	0	97142..97675	-	177	134294213	-	Bcep1808_0090	-	adenylate cyclase
86	 70.39	0	97762..98700	-	312	134294214	-	Bcep1808_0091	-	LysR family transcriptional regulator
87	 69.16	0	98826..100511	+	561	134294215	-	Bcep1808_0092	-	glucose-methanol-choline oxidoreductase
88	 65.51	0	100965..101744	+	259	134294216	-	Bcep1808_0093	-	ABC transporter related
89	 67.59	0	101741..102496	+	251	134294217	-	Bcep1808_0094	-	ABC transporter related
90	 64.58	0	102574..103773	+	399	134294218	-	Bcep1808_0095	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
91	 64.44	0	103836..104777	+	313	134294219	-	Bcep1808_0096	-	inner-membrane translocator
92	 67.79	0	104777..105751	+	324	134294220	-	Bcep1808_0097	-	inner-membrane translocator
93	 65.80	0	106824..107981	+	385	134294221	-	Bcep1808_0098	-	extracellular ligand-binding receptor
94	 66.04	0	108075..109199	+	374	134294222	-	Bcep1808_0099	-	inner-membrane translocator
95	 67.39	0	109204..110988	+	594	134294223	-	Bcep1808_0100	-	ABC transporter related
96	 65.34	0	110988..111743	+	251	134294224	-	Bcep1808_0101	-	ABC transporter related
97	 63.77	0	112214..114184	+	656	134294225	-	Bcep1808_0102	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
98	 62.01	0	114181..114867	+	228	134294226	-	Bcep1808_0103	-	methyltransferase GidB
99	 63.59	0	114918..115697	+	259	134294227	-	Bcep1808_0104	-	chromosome segregation ATPase
100	 66.22	0	115729..116622	+	297	134294228	-	Bcep1808_0105	-	chromosome segregation DNA-binding protein
66.40	MEAN

5.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.