IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.67   STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.28	0	23..1618	-	531	187925959	-	Rpic_3761	-	peptide chain release factor 3
2	 63.43	0	1899..2207	+	102	187925960	-	Rpic_3762	-	hypothetical protein
3	 63.70	0	2330..2632	+	100	187925961	-	Rpic_3763	-	hypothetical protein
4	 66.57	0	2647..3636	-	329	187925962	-	Rpic_3764	-	ribonuclease BN
5	 68.63	+1	3721..4026	-	101	187925963	-	Rpic_3765	-	hypothetical protein
6	 57.74	-2	4080..4247	-	55	187925964	-	Rpic_3766	-	protein of unknown function DUF1328
7	 65.17	0	4367..5773	-	468	187925965	-	Rpic_3767	-	two component, sigma54 specific, transcriptional regulator, Fis family
8	 65.48	0	6310..7407	+	365	187925966	-	Rpic_3768	-	sigma54 specific transcriptional regulator, Fis family
9	 67.91	0	7630..7950	-	106	187925967	-	Rpic_3769	-	conserved hypothetical signal peptide protein
10	 65.60	0	8263..9765	+	500	187925968	-	Rpic_3770	-	RNA polymerase, sigma 54 subunit, RpoN
11	 69.99	+1	9819..10991	+	390	187925969	-	Rpic_3771	-	glycosyl transferase group 1
12	 66.54	0	11010..11804	+	264	187925970	-	Rpic_3772	-	hypothetical protein
13	 65.74	0	11811..12347	-	178	187925971	-	Rpic_3773	-	phosphoesterase PA-phosphatase related
14	 69.65	+1	12325..13497	-	390	187925972	-	Rpic_3774	-	glycosyl transferase group 1
15	 69.44	+1	13506..13937	-	143	187925973	-	Rpic_3775	-	hypothetical protein
16	 68.26	+1	14139..15458	-	439	187925974	-	Rpic_3776	-	protein of unknown function UPF0118
17	 67.00	0	15460..17844	-	794	187925975	-	Rpic_3777	-	PAS/PAC sensor hybrid histidine kinase
18	 60.92	-1	17929..18711	-	260	187925976	-	Rpic_3778	-	hypothetical protein
19	 69.31	+1	19004..20287	+	427	187925977	-	Rpic_3779	-	putative proline-rich protein
20	 63.45	0	20561..21865	-	434	187925978	-	Rpic_3780	-	Xanthine/uracil/vitamin C permease
21	 61.45	0	23271..24344	+	357	187925979	-	Rpic_3781	-	plasmid encoded RepA protein
22	 57.35	-2	24421..24624	-	67	187925980	-	Rpic_3782	-	cold-shock DNA-binding domain protein
23	 59.49	-1	25030..25698	+	222	187925981	-	Rpic_3783	-	Cobyrinic acid ac-diamide synthase
24	 57.84	-2	25695..26702	+	335	187925982	-	Rpic_3784	-	parB-like partition protein
25	 65.59	0	27001..27837	+	278	187925983	-	Rpic_3785	-	hypothetical protein
26	 62.79	0	28088..29041	+	317	187925984	-	Rpic_3786	-	UTP-glucose-1-phosphate uridylyltransferase
27	 63.18	0	29300..30646	+	448	187925985	-	Rpic_3787	-	General substrate transporter
28	 68.40	+1	30651..32558	+	635	187925986	-	Rpic_3788	-	integral membrane sensor signal transduction histidine kinase
29	 65.05	0	32555..33913	+	452	187925987	-	Rpic_3789	-	two component, sigma54 specific, transcriptional regulator, Fis family
30	 69.41	+1	33910..34710	-	266	187925988	-	Rpic_3790	-	putative lipoprotein transmembrane
31	 66.67	0	34823..35263	+	146	187925989	-	Rpic_3791	-	conserved hypothetical signal peptide protein
32	 66.26	0	35376..38057	+	893	187925990	-	Rpic_3792	-	diguanylate cyclase with PAS/PAC sensor
33	 63.22	0	38492..39652	+	386	187925991	-	Rpic_3793	-	Extracellular ligand-binding receptor
34	 65.99	0	39749..40630	+	293	187925992	-	Rpic_3794	-	inner-membrane translocator
35	 64.91	0	40644..41552	+	302	187925993	-	Rpic_3795	-	inner-membrane translocator
36	 63.53	0	41560..42357	+	265	187925994	-	Rpic_3796	-	ABC transporter related
37	 64.88	0	42354..43079	+	241	187925995	-	Rpic_3797	-	ABC transporter related
38	 68.12	+1	43153..44049	-	298	187925996	-	Rpic_3798	-	transcriptional regulator, LysR family
39	 68.37	+1	44225..45223	+	332	187925997	-	Rpic_3799	-	Alcohol dehydrogenase zinc-binding domain protein
40	 65.41	0	45319..45636	+	105	187925998	-	Rpic_3800	-	YCII-related
41	 66.88	0	45689..47083	+	464	187925999	-	Rpic_3801	-	Chloride channel core
42	 63.71	0	47353..49581	+	742	187926000	-	Rpic_3802	-	TonB-dependent siderophore receptor
43	 64.34	0	49630..50316	+	228	187926001	-	Rpic_3803	-	2OG-Fe(II) oxygenase
44	 66.67	0	50377..50523	-	48	187926002	-	Rpic_3804	-	hypothetical protein
45	 67.77	0	50648..53176	-	842	187926003	-	Rpic_3805	-	Pyruvate, water dikinase
46	 65.24	0	53176..53805	-	209	187926004	-	Rpic_3806	-	transcriptional regulator, TetR family
47	 65.41	0	53925..54878	+	317	187926005	-	Rpic_3807	-	proline iminopeptidase
48	 65.02	0	54933..57359	+	808	187926006	-	Rpic_3808	-	multi-sensor hybrid histidine kinase
49	 62.59	0	57801..58388	+	195	187926007	-	Rpic_3809	-	Fimbrial protein
50	 62.23	0	58473..59216	+	247	187926008	-	Rpic_3810	-	Pili assembly chaperone, N-terminal
51	 62.94	0	59300..61927	+	875	187926009	-	Rpic_3811	-	fimbrial biogenesis outer membrane usher protein
52	 59.93	-1	63686..63982	+	98	187926010	-	Rpic_3814	-	transposase IS3/IS911 family protein
53	 61.74	0	63979..64872	+	297	187926011	-	Rpic_3815	-	Integrase catalytic region
54	 54.41	-2	64884..65552	+	222	187926012	-	Rpic_3816	-	Fimbrial protein
55	 65.70	0	66041..66868	+	275	187926013	-	Rpic_3817	-	Beta-lactamase
56	 67.36	0	66878..67603	-	241	187926014	-	Rpic_3818	-	transcriptional regulator, ArsR family
57	 69.43	+1	67725..69101	+	458	187926015	-	Rpic_3819	-	major facilitator superfamily MFS_1
58	 52.78	-2	69918..70097	+	59	187926016	-	Rpic_3820	-	hypothetical protein
59	 63.82	0	70097..71605	+	502	187926017	-	Rpic_3821	-	Na+/solute symporter
60	 63.91	0	71890..72288	+	132	187926018	-	Rpic_3822	-	hypothetical protein
61	 62.11	0	72406..72690	+	94	187926019	-	Rpic_3823	-	hypothetical protein
62	 65.25	0	72842..73264	-	140	187926020	-	Rpic_3824	-	GCN5-related N-acetyltransferase
63	 61.90	0	73316..74386	-	356	187926021	-	Rpic_3825	-	arsenical-resistance protein
64	 66.07	0	74460..74963	-	167	187926022	-	Rpic_3826	-	protein tyrosine phosphatase
65	 64.39	0	74974..75456	-	160	187926023	-	Rpic_3827	-	Glyoxalase/bleomycin resistance protein/dioxygenase
66	 65.88	0	75468..75722	-	84	187926024	-	Rpic_3828	-	putative transcriptional regulator, ArsR family
67	 65.58	0	76071..76991	+	306	187926025	-	Rpic_3829	-	putative exonuclease RdgC
68	 65.78	0	77049..77726	-	225	187926026	-	Rpic_3830	-	putative periplasmic ligand-binding sensor protein
69	 65.32	0	77993..80371	+	792	187926027	-	Rpic_3831	-	NADH:flavin oxidoreductase/NADH oxidase
70	 68.20	+1	80373..81155	+	260	187926028	-	Rpic_3832	-	short-chain dehydrogenase/reductase SDR
71	 65.47	0	81152..81736	+	194	187926029	-	Rpic_3833	-	transcriptional regulator, MarR family
72	 66.43	0	81754..82614	+	286	187926030	-	Rpic_3834	-	Enoyl-CoA hydratase/isomerase
73	 68.03	0	82616..83791	+	391	187926031	-	Rpic_3835	-	acyl-CoA dehydrogenase domain protein
74	 67.22	0	83828..85444	+	538	187926032	-	Rpic_3836	-	AMP-dependent synthetase and ligase
75	 61.81	0	85441..85872	+	143	187926033	-	Rpic_3837	-	putative 4-hydroxybenzoyl-CoA thioesterase protein
76	 65.65	0	85886..86278	+	130	187926034	-	Rpic_3838	-	Endoribonuclease L-PSP
77	 62.86	0	86584..87660	-	358	187926035	-	Rpic_3839	-	transcriptional regulator, AraC family
78	 61.36	0	87800..88195	+	131	187926036	-	Rpic_3840	-	Carboxymuconolactone decarboxylase
79	 63.81	0	88231..89280	+	349	187926037	-	Rpic_3841	-	protein of unknown function DUF849
80	 61.31	0	89396..90217	+	273	187926038	-	Rpic_3842	-	short-chain dehydrogenase/reductase SDR
81	 64.02	0	90335..91618	+	427	187926039	-	Rpic_3843	-	major facilitator superfamily MFS_1
82	 64.60	0	92176..93480	-	434	187926040	-	Rpic_3844	-	metabolite/H+ symporter, major facilitator superfamily (MFS)
83	 66.99	0	93664..94884	-	406	187926041	-	Rpic_3845	-	major facilitator superfamily MFS_1
84	 67.26	0	94984..95820	-	278	187926042	-	Rpic_3846	-	transcriptional regulator, GntR family
85	 67.21	0	95985..96536	-	183	187926043	-	Rpic_3847	-	transcriptional regulator, HxlR family
86	 67.70	0	96670..97248	+	192	187926044	-	Rpic_3848	-	GCN5-related N-acetyltransferase
87	 65.06	0	97487..97921	+	144	187926045	-	Rpic_3849	-	Glyoxalase/bleomycin resistance protein/dioxygenase
88	 68.50	+1	97972..98844	+	290	187926046	-	Rpic_3850	-	transcriptional regulator, LysR family
89	 67.30	0	98945..99730	+	261	187926047	-	Rpic_3851	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
90	 68.67	+1	99735..101033	-	432	187926048	-	Rpic_3852	-	major facilitator superfamily MFS_1
91	 68.22	+1	101195..101836	+	213	187926049	-	Rpic_3853	-	transcriptional regulator, TetR family
92	 69.75	+1	101968..102939	+	323	187926050	-	Rpic_3854	-	ATPase associated with various cellular activities AAA_3
93	 71.04	+1	102952..104025	+	357	187926051	-	Rpic_3855	-	protein of unknown function DUF58
94	 69.98	+1	104022..106046	+	674	187926052	-	Rpic_3856	-	transglutaminase domain protein
95	 70.03	+1	106559..107629	+	356	187926053	-	Rpic_3857	-	putative lipoprotein
96	 67.59	0	107724..108911	-	395	187926054	-	Rpic_3858	-	AcnD-accessory protein PrpF
97	 65.20	0	108908..111505	-	865	187926055	-	Rpic_3859	-	2-methylisocitrate dehydratase, Fe/S-dependent
98	 63.33	0	111821..112990	-	389	187926056	-	Rpic_3860	-	2-methylcitrate synthase/citrate synthase II
99	 64.21	0	113027..113923	-	298	187926057	-	Rpic_3861	-	methylisocitrate lyase
100	 68.26	+1	114117..116063	+	648	187926058	-	Rpic_3862	-	proprionate catabolism activator, Fis family
64.67	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.