IslandPath Analysis: Desulfovibrio desulfuricans subsp. desulfuricans str. G20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.05   STD DEV: 5.42
Desulfovibrio desulfuricans G20, complete genome - 1..3730232
3775 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.01	0	189..1499	+	436	78355048	-	Dde_0001	-	chromosomal replication initiator protein DnaA
2	 51.60	-1	1642..2796	+	384	78355049	-	Dde_0002	-	DNA polymerase III, beta subunit
3	 55.10	0	2797..5190	+	797	78355050	-	Dde_0003	-	DNA gyrase subunit B
4	 55.71	0	5212..7647	+	811	78355051	-	Dde_0004	-	DNA gyrase subunit A
5	 57.11	0	7654..8469	+	271	78355052	-	Dde_0005	-	putative lipoprotein
6	 64.91	+1	8613..8840	+	75	78355053	-	Dde_0006	-	hypothetical protein
7	 61.83	0	9021..9206	-	61	78355054	-	Dde_0007	-	hypothetical protein
8	 45.10	-2	9256..9357	-	33	78355055	-	Dde_0008	-	hypothetical protein
9	 58.57	0	9373..10113	+	246	78355056	-	Dde_0009	-	hypothetical protein
10	 54.55	0	10232..10330	+	32	78355057	-	Dde_0010	-	hypothetical protein
11	 57.58	0	10354..11607	+	417	78355058	hisS	Dde_0011	-	histidyl-tRNA synthetase
12	 57.00	0	11670..13490	+	606	78355059	aspS	Dde_0012	-	aspartyl-tRNA synthetase
13	 54.71	0	13700..14209	+	169	78355060	-	Dde_0013	-	peptide deformylase
14	 60.30	0	14185..15174	+	329	78355061	-	Dde_0014	-	methionyl-tRNA formyltransferase
15	 55.15	0	15341..15922	+	193	78355062	-	Dde_0015	-	hypothetical protein
16	 56.94	0	15929..16216	+	95	78355063	-	Dde_0016	-	hypothetical protein
17	 57.15	0	16213..17547	+	444	78355064	-	Dde_0017	-	sun protein
18	 51.96	0	17640..17741	-	33	78355065	-	Dde_0018	-	hypothetical protein
19	 53.02	0	17820..18200	-	126	78355066	-	Dde_0019	-	hypothetical protein
20	 59.45	0	18203..18853	-	216	78355067	-	Dde_0020	-	hypothetical protein
21	 53.40	0	18872..19813	-	313	78355068	-	Dde_0021	-	ABC-type transport system involved in resistance to organic solvents periplasmic component-like
22	 57.07	0	19836..20606	-	256	78355069	-	Dde_0022	-	ATPase
23	 55.78	0	20610..21362	-	250	78355070	-	Dde_0023	-	transporter, putative
24	 53.77	0	21365..21682	-	105	78355071	-	Dde_0024	-	anti-anti-sigma regulatory factor, SpoIIAA
25	 58.18	0	21816..21980	-	54	78355072	-	Dde_0025	-	hypothetical protein
26	 61.45	0	22073..22321	-	82	78355073	-	Dde_0026	-	hypothetical protein
27	 60.00	0	22373..22627	-	84	78355074	-	Dde_0027	-	hypothetical protein
28	 55.65	0	22658..23692	-	344	78355075	-	Dde_0028	-	D-alpha,beta-D-heptose 7-phosphate 1-kinase
29	 54.90	0	23708..24625	-	305	78355076	-	Dde_0029	-	chromosome segregation DNA-binding protein
30	 53.86	0	24709..25122	+	137	78355077	-	Dde_0030	-	hypothetical protein
31	 51.15	-1	25128..25907	-	259	78355078	-	Dde_0031	-	chromosome segregation ATPase
32	 42.42	-2	26109..26240	-	43	78355079	-	Dde_0032	-	hypothetical protein
33	 53.01	0	26246..27343	-	365	78355080	-	Dde_0033	-	NAD-dependent epimerase/dehydratase family protein
34	 58.89	0	27445..27624	-	59	78355081	-	Dde_0034	-	hypothetical protein
35	 58.99	0	27660..28115	+	151	78355082	-	Dde_0035	-	hypothetical protein
36	 52.77	0	28150..28962	-	270	78355083	-	Dde_0036	-	SPFH domain-containing protein/band 7 family protein
37	 57.98	0	28946..30304	-	452	78355084	-	Dde_0037	-	nodulation efficiency protein NfeD
38	 62.99	+1	30558..31454	-	298	78355085	-	Dde_0038	-	hypothetical protein
39	 60.80	0	31436..32662	-	408	78355086	-	Dde_0039	-	phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase
40	 56.09	0	32662..33162	-	166	78355087	-	Dde_0040	-	putative lipoprotein
41	 61.11	0	33159..33464	-	101	78355088	-	Dde_0041	-	hypothetical protein
42	 60.37	0	33471..34613	+	380	78355089	-	Dde_0042	-	S-adenosylmethionine/tRNA ribosyltransferase-isomerase
43	 55.69	0	34764..35009	+	81	78355090	-	Dde_0043	-	2-oxoglutarate ferredoxin oxidoreductase, delta subunit
44	 60.38	0	35014..36078	+	354	78355091	-	Dde_0044	-	2-ketoisovalerate ferredoxin reductase
45	 59.23	0	36082..36861	+	259	78355092	-	Dde_0045	-	pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative
46	 55.80	0	36866..37417	+	183	78355093	-	Dde_0046	-	2-oxoglutarate ferredoxin oxidoreductase, gamma subunit
47	 63.32	+1	37589..38485	-	298	78355094	-	Dde_0047	-	Elongator protein 3/MiaB/NifB
48	 61.46	0	38551..39492	-	313	78355095	-	Dde_0048	-	hypothetical protein
49	 57.67	0	39496..39684	-	62	78355096	-	Dde_0049	-	hypothetical protein
50	 57.27	0	39749..40993	+	414	78355097	-	Dde_0050	-	alcohol dehydrogenase, iron-containing
51	 49.09	-1	41009..41173	+	54	78355098	-	Dde_0051	-	hypothetical protein
52	 42.93	-2	41189..41386	-	65	78355099	-	Dde_0052	-	hypothetical protein
53	 51.23	-1	41412..42143	+	243	78355100	-	Dde_0053	-	hypothetical protein
54	 58.30	0	42335..45346	-	1003	78355101	-	Dde_0054	-	L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase
55	 52.54	0	45479..45655	+	58	78355102	-	Dde_0055	-	hypothetical protein
56	 61.70	0	45695..46621	-	308	78355103	-	Dde_0056	-	dihydroorotate oxidase B, catalytic subunit
57	 59.95	0	46632..47450	-	272	78355104	-	Dde_0057	-	dihydroorotate oxidase B, electron transfer subunit
58	 62.26	0	47667..49913	+	748	78355105	-	Dde_0058	-	U32 family peptidase
59	 62.69	+1	50025..50930	-	301	78355106	-	Dde_0059	-	ADP-ribosylglycohydrolase family protein
60	 48.80	-1	51082..51579	-	165	78355107	-	Dde_0060	-	hypothetical protein
61	 58.85	0	51619..51810	+	63	78355108	-	Dde_0061	-	hypothetical protein
62	 58.55	0	51957..53324	+	455	161485612	engA	Dde_0062	-	GTP-binding protein EngA
63	 60.31	0	53429..54892	-	487	78355110	-	Dde_0063	-	putative lipoprotein
64	 59.81	0	54889..55734	-	281	78355111	-	Dde_0064	-	hypothetical protein
65	 56.93	0	55979..56902	+	307	78355112	-	Dde_0065	-	branched-chain amino acid aminotransferase
66	 61.82	0	56972..58705	+	577	78355113	-	Dde_0066	-	DNA polymerase III, tau subunit
67	 55.45	0	58746..59057	+	103	78355114	-	Dde_0067	-	hypothetical protein
68	 59.97	0	59077..59673	+	198	78355115	-	Dde_0068	-	DNA replication and repair protein RecR
69	 64.55	+1	59975..60541	-	188	78355116	-	Dde_0069	-	hypothetical protein
70	 59.89	0	60822..62105	+	427	78355117	-	Dde_0070	-	Ste24 endopeptidase
71	 57.86	0	62153..62572	-	139	78355118	-	Dde_0071	-	response regulator receiver domain-containing protein
72	 47.86	-1	62697..62813	+	38	78355119	-	Dde_0072	-	hypothetical protein
73	 56.04	0	62894..63307	-	137	78355120	-	Dde_0073	-	hypothetical protein
74	 61.49	0	63304..64134	-	276	78355121	-	Dde_0074	-	TatD-related deoxyribonuclease
75	 61.72	0	64157..65188	-	343	78355122	-	Dde_0075	-	hypothetical protein
76	 61.42	0	65266..66333	-	355	78355123	-	Dde_0076	-	translation initiation factor 2B subunit I
77	 61.73	0	66609..67844	+	411	78355124	-	Dde_0077	-	diguanylate cyclase
78	 50.43	-1	67926..68042	-	38	78355125	-	Dde_0078	-	hypothetical protein
79	 59.01	0	68277..69425	+	382	78355126	-	Dde_0079	-	tryptophan synthase subunit beta
80	 62.37	0	75207..75299	-	30	78355127	-	Dde_0080	-	hypothetical protein
81	 52.45	0	75821..77086	+	421	78355128	-	Dde_0081	-	ferredoxin hydrogenase
82	 52.42	0	77096..77467	+	123	78355129	-	Dde_0082	-	ferredoxin hydrogenase
83	 53.85	0	77574..77690	-	38	78355130	-	Dde_0083	-	hypothetical protein
84	 60.86	0	77722..78186	+	154	78355131	-	Dde_0084	-	hypothetical protein
85	 59.02	0	78289..79518	-	409	78355132	-	Dde_0085	-	hypothetical protein
86	 51.75	0	79628..80284	+	218	78355133	-	Dde_0086	-	dihydropteridine reductase
87	 62.36	0	80378..81283	-	301	78355134	-	Dde_0087	-	LysR family transcriptional regulator
88	 58.28	0	81420..81932	+	170	78355135	-	Dde_0088	-	hypothetical protein
89	 62.95	+1	81993..82772	-	259	78355136	-	Dde_0089	-	CoA enzyme activase
90	 55.58	0	82773..84053	-	426	78355137	-	Dde_0090	-	2-hydroxyglutaryl-CoA dehydratase, beta subunit-like
91	 58.10	0	84179..84283	+	34	78355138	-	Dde_0091	-	hypothetical protein
92	 64.70	+1	84280..86007	+	575	78355139	-	Dde_0092	-	hydantoinase/oxoprolinase family protein
93	 59.42	0	86018..86362	+	114	78355140	-	Dde_0093	-	hypothetical protein
94	 58.67	0	86436..86660	-	74	78355141	-	Dde_0094	-	hypothetical protein
95	 61.56	0	86817..87404	+	195	78355142	-	Dde_0095	-	methyltransferase (putative)
96	 53.09	0	87461..87703	+	80	78355143	-	Dde_0096	-	hypothetical protein
97	 58.05	0	87741..88784	+	347	78355144	-	Dde_0097	-	hypothetical protein
98	 57.68	0	88875..89297	-	140	78355145	-	Dde_0098	-	universal stress protein
99	 57.94	0	89444..90829	-	461	78355146	asnC	Dde_0099	-	asparaginyl-tRNA synthetase
100	 52.78	0	90847..91026	+	59	78355147	-	Dde_0100	-	hypothetical protein
57.05	MEAN

5.42	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.